Wall clock time and date at job start Tue Mar 31 2020 03:58:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.39729 * 119.59160 * 309.56566 * 3 2 1 5 5 C 1.37975 * 119.19934 * 180.25108 * 4 3 2 6 6 C 1.40240 * 118.40053 * 359.48668 * 5 4 3 7 7 C 1.47669 * 120.43970 * 180.27048 * 6 5 4 8 8 O 1.21579 * 120.00127 * 329.32700 * 7 6 5 9 9 N 1.34776 * 120.00091 * 149.33001 * 7 6 5 10 10 C 1.46503 * 119.99873 * 4.64028 * 9 7 6 11 11 C 1.46502 * 120.00310 * 184.63891 * 9 7 6 12 12 C 1.52996 * 109.47095 * 94.78596 * 11 9 7 13 13 H 1.09004 * 112.96383 * 67.54463 * 12 11 9 14 14 C 1.53942 * 113.77000 * 295.86631 * 12 11 9 15 15 C 1.53947 * 86.28868 * 222.09433 * 14 12 11 16 16 N 1.47580 * 113.76842 * 199.36623 * 12 11 9 17 17 C 1.36931 * 134.49458 * 318.94844 * 16 12 11 18 18 H 1.08004 * 120.00204 * 5.44985 * 17 16 12 19 19 C 1.38818 * 120.00421 * 185.45459 * 17 16 12 20 20 N 1.31628 * 119.99469 * 359.97438 * 19 17 16 21 21 Si 1.86794 * 120.00620 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47103 * 89.99594 * 21 19 17 23 23 H 1.48492 * 109.47085 * 210.00238 * 21 19 17 24 24 H 1.48500 * 109.46796 * 330.00271 * 21 19 17 25 25 C 1.39659 * 119.11921 * 0.25445 * 6 5 4 26 26 N 1.31484 * 120.70846 * 0.02562 * 25 6 5 27 27 H 4.51266 * 14.17632 * 359.97438 * 4 2 1 28 28 H 1.07995 * 120.40028 * 359.97438 * 4 3 2 29 29 H 1.08000 * 120.79620 * 179.76025 * 5 4 3 30 30 H 1.09000 * 109.47590 * 94.96642 * 10 9 7 31 31 H 1.08999 * 109.47179 * 214.97235 * 10 9 7 32 32 H 1.09002 * 109.47153 * 334.96409 * 10 9 7 33 33 H 1.09006 * 109.46874 * 214.78895 * 11 9 7 34 34 H 1.08995 * 109.46631 * 334.78535 * 11 9 7 35 35 H 1.09000 * 113.74077 * 336.43288 * 14 12 11 36 36 H 1.08995 * 113.74677 * 107.64254 * 14 12 11 37 37 H 1.08999 * 113.77496 * 137.90983 * 15 14 12 38 38 H 1.09006 * 113.76571 * 269.19384 * 15 14 12 39 39 H 0.96995 * 119.99568 * 180.02562 * 20 19 17 40 40 H 1.07995 * 119.64720 * 180.02562 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.2963 -0.7730 0.9367 5 6 4.6760 -0.7623 0.9328 6 6 5.3343 0.0221 -0.0254 7 6 6.8096 0.0621 -0.0742 8 8 7.4556 -0.0789 0.9461 9 7 7.4401 0.2550 -1.2496 10 6 6.6631 0.5262 -2.4617 11 6 8.9024 0.1934 -1.3154 12 6 9.3356 -1.2153 -1.7261 13 1 9.0589 -1.4635 -2.7508 14 6 8.9625 -2.3024 -0.7020 15 6 10.3636 -2.8856 -0.9606 16 7 10.7396 -1.5261 -1.3946 17 6 11.9180 -0.8320 -1.4623 18 1 11.9152 0.2105 -1.7448 19 6 13.1163 -1.4680 -1.1679 20 7 13.1196 -2.7383 -0.8232 21 14 14.7238 -0.5213 -1.2610 22 1 15.0129 0.0942 0.0591 23 1 15.8242 -1.4491 -1.6263 24 1 14.6122 0.5437 -2.2898 25 6 4.5760 0.7647 -0.9332 26 7 3.2621 0.7331 -0.8944 27 1 -1.0500 -0.0001 0.0009 28 1 2.7565 -1.3686 1.6579 29 1 5.2356 -1.3474 1.6475 30 1 6.5966 1.6030 -2.6174 31 1 7.1538 0.0648 -3.3187 32 1 5.6608 0.1125 -2.3509 33 1 9.2636 0.9134 -2.0499 34 1 9.3203 0.4315 -0.3373 35 1 8.8252 -1.9229 0.3105 36 1 8.1487 -2.9507 -1.0268 37 1 10.8758 -3.2158 -0.0568 38 1 10.3903 -3.6268 -1.7594 39 1 13.9568 -3.1827 -0.6172 40 1 5.0741 1.3714 -1.6749 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085934312.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:58:39 Heat of formation + Delta-G solvation = 143.718097 kcal Electronic energy + Delta-G solvation = -23360.867964 eV Core-core repulsion = 19952.633656 eV Total energy + Delta-G solvation = -3408.234309 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 299.137 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.03716 -39.33817 -37.64517 -35.54743 -34.23477 -32.83016 -32.17116 -31.29072 -28.49756 -27.79680 -26.97537 -24.98057 -23.83283 -23.25840 -22.40079 -19.86678 -19.75551 -18.97095 -17.69315 -16.98572 -16.62398 -16.36151 -15.87266 -15.53004 -14.76031 -14.62282 -14.51545 -14.02361 -13.96399 -13.54725 -13.48447 -13.16576 -12.88858 -12.35559 -12.29973 -11.85039 -11.48040 -11.35518 -11.24334 -11.02541 -10.87271 -10.69376 -10.42654 -10.23090 -10.18174 -9.84915 -9.71476 -9.64694 -9.45466 -9.09591 -8.76624 -8.41356 -6.82843 -5.72879 -3.04807 0.09776 0.88166 2.24670 2.29292 2.87677 3.09725 3.41762 3.46006 3.48054 3.52305 3.67832 4.25054 4.31935 4.49802 4.53572 4.71391 4.79195 4.94922 5.18398 5.20772 5.27063 5.35494 5.47504 5.56221 5.58164 5.72370 5.73011 5.88619 5.94623 6.11096 6.16970 6.37338 6.51873 6.65046 6.76116 6.80208 7.03800 7.30514 7.39768 7.44613 7.54412 7.63958 8.02588 8.20426 9.08401 9.75091 10.65594 11.44790 Molecular weight = 299.14amu Principal moments of inertia in cm(-1) A = 0.037538 B = 0.002973 C = 0.002897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.723644 B = 9416.336725 C = 9662.928734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.148 4.148 3 C 0.238 3.762 4 C -0.151 4.151 5 C -0.017 4.017 6 C -0.170 4.170 7 C 0.558 3.442 8 O -0.519 6.519 9 N -0.599 5.599 10 C 0.055 3.945 11 C 0.115 3.885 12 C 0.128 3.872 13 H 0.042 0.958 14 C -0.160 4.160 15 C 0.165 3.835 16 N -0.600 5.600 17 C -0.223 4.223 18 H 0.079 0.921 19 C -0.007 4.007 20 N -0.920 5.920 21 Si 0.910 3.090 22 H -0.288 1.288 23 H -0.291 1.291 24 H -0.281 1.281 25 C 0.120 3.880 26 N -0.473 5.473 27 H 0.230 0.770 28 H 0.146 0.854 29 H 0.153 0.847 30 H 0.064 0.936 31 H 0.078 0.922 32 H 0.084 0.916 33 H 0.071 0.929 34 H 0.097 0.903 35 H 0.084 0.916 36 H 0.042 0.958 37 H 0.066 0.934 38 H 0.026 0.974 39 H 0.253 0.747 40 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.586 4.810 -0.408 24.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.149 4.149 3 C 0.103 3.897 4 C -0.171 4.171 5 C -0.043 4.043 6 C -0.175 4.175 7 C 0.345 3.655 8 O -0.395 6.395 9 N -0.332 5.332 10 C -0.088 4.088 11 C -0.008 4.008 12 C 0.020 3.980 13 H 0.059 0.941 14 C -0.199 4.199 15 C 0.040 3.960 16 N -0.326 5.326 17 C -0.351 4.351 18 H 0.096 0.904 19 C -0.204 4.204 20 N -0.567 5.567 21 Si 0.740 3.260 22 H -0.215 1.215 23 H -0.217 1.217 24 H -0.207 1.207 25 C -0.039 4.039 26 N -0.182 5.182 27 H 0.247 0.753 28 H 0.164 0.836 29 H 0.171 0.829 30 H 0.082 0.918 31 H 0.096 0.904 32 H 0.102 0.898 33 H 0.089 0.911 34 H 0.115 0.885 35 H 0.102 0.898 36 H 0.061 0.939 37 H 0.084 0.916 38 H 0.044 0.956 39 H 0.063 0.937 40 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -23.278 5.262 -0.454 23.870 hybrid contribution 1.277 -0.085 0.203 1.296 sum -22.002 5.177 -0.251 22.604 Atomic orbital electron populations 1.24956 0.95636 0.97354 0.97629 1.19305 0.91046 1.02358 1.02209 1.16746 0.88142 0.92980 0.91826 1.22012 0.94385 1.00609 1.00082 1.21672 0.93575 0.94151 0.94900 1.21202 0.95297 1.01871 0.99164 1.17945 0.86235 0.77495 0.83861 1.90838 1.66759 1.48879 1.33073 1.47676 1.07999 1.69964 1.07552 1.22497 0.97272 1.00899 0.88157 1.21901 0.76235 0.98721 1.03961 1.22506 0.87164 0.92506 0.95861 0.94082 1.23835 0.98061 0.98090 0.99892 1.22094 0.88462 0.87582 0.97835 1.45960 1.00737 1.11494 1.74397 1.18978 0.82666 0.93006 1.40416 0.90361 1.24807 0.97458 0.95953 1.02199 1.69842 1.25521 1.09406 1.51885 0.86154 0.83495 0.78556 0.77756 1.21532 1.21703 1.20716 1.23822 0.88640 0.95738 0.95719 1.67822 1.09687 1.18702 1.21954 0.75307 0.83619 0.82930 0.91770 0.90372 0.89826 0.91071 0.88503 0.89753 0.93947 0.91572 0.95637 0.93684 0.79934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.94 19.25 29.55 0.57 -0.37 16 2 C -0.15 -1.45 13.43 -38.84 -0.52 -1.98 16 3 C 0.24 2.62 6.59 -84.91 -0.56 2.06 16 4 C -0.15 -1.44 9.77 -39.12 -0.38 -1.83 16 5 C -0.02 -0.19 9.72 -38.93 -0.38 -0.56 16 6 C -0.17 -2.08 5.53 -104.76 -0.58 -2.66 16 7 C 0.56 8.45 6.94 -12.41 -0.09 8.37 16 8 O -0.52 -9.88 14.88 5.30 0.08 -9.80 16 9 N -0.60 -8.44 2.79 -182.76 -0.51 -8.95 16 10 C 0.05 0.53 8.83 59.85 0.53 1.05 16 11 C 0.11 2.02 5.46 -4.04 -0.02 2.00 16 12 C 0.13 2.60 4.59 -66.87 -0.31 2.29 16 13 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 14 C -0.16 -3.28 7.22 -25.81 -0.19 -3.46 16 15 C 0.17 4.08 7.39 -2.97 -0.02 4.06 16 16 N -0.60 -15.52 3.57 -170.73 -0.61 -16.13 16 17 C -0.22 -6.26 10.51 -15.06 -0.16 -6.42 16 18 H 0.08 2.09 7.83 -52.48 -0.41 1.68 16 19 C -0.01 -0.22 5.50 -17.42 -0.10 -0.31 16 20 N -0.92 -27.85 11.53 55.49 0.64 -27.21 16 21 Si 0.91 22.41 29.55 -169.99 -5.02 17.38 16 22 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 23 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 24 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 25 C 0.12 1.28 8.63 -17.17 -0.15 1.13 16 26 N -0.47 -5.56 10.26 -10.78 -0.11 -5.67 16 27 H 0.23 0.57 7.80 -54.09 -0.42 0.15 16 28 H 0.15 1.00 8.06 -52.49 -0.42 0.58 16 29 H 0.15 1.58 7.99 -52.49 -0.42 1.16 16 30 H 0.06 0.48 7.50 -51.93 -0.39 0.09 16 31 H 0.08 0.73 8.11 -51.93 -0.42 0.31 16 32 H 0.08 0.72 4.57 -51.93 -0.24 0.48 16 33 H 0.07 1.16 8.11 -51.93 -0.42 0.74 16 34 H 0.10 2.01 7.23 -51.93 -0.38 1.64 16 35 H 0.08 1.83 6.68 -51.93 -0.35 1.49 16 36 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.07 1.80 7.42 -51.93 -0.39 1.41 16 38 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 40 H 0.18 1.54 4.67 -52.49 -0.25 1.30 16 LS Contribution 341.96 15.07 5.15 5.15 Total: -1.00 -34.99 341.96 -7.63 -42.62 By element: Atomic # 1 Polarization: 4.14 SS G_CDS: -4.90 Total: -0.76 kcal Atomic # 6 Polarization: 5.73 SS G_CDS: -2.35 Total: 3.38 kcal Atomic # 7 Polarization: -57.38 SS G_CDS: -0.59 Total: -57.96 kcal Atomic # 8 Polarization: -9.88 SS G_CDS: 0.08 Total: -9.80 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -34.99 -7.63 -42.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085934312.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 186.334 kcal (2) G-P(sol) polarization free energy of solvation -34.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 151.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.616 kcal (6) G-S(sol) free energy of system = (1) + (5) 143.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds