Wall clock time and date at job start Tue Mar 31 2020 03:58:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.39729 * 119.59160 * 309.56566 * 3 2 1 5 5 C 1.37975 * 119.19934 * 180.25108 * 4 3 2 6 6 C 1.40240 * 118.40053 * 359.48668 * 5 4 3 7 7 C 1.47669 * 120.43970 * 180.27048 * 6 5 4 8 8 O 1.21579 * 120.00127 * 329.32700 * 7 6 5 9 9 N 1.34776 * 120.00091 * 149.33001 * 7 6 5 10 10 C 1.46503 * 119.99873 * 4.64028 * 9 7 6 11 11 C 1.46502 * 120.00310 * 184.63891 * 9 7 6 12 12 C 1.52996 * 109.47095 * 94.78596 * 11 9 7 13 13 H 1.09004 * 112.96383 * 67.54463 * 12 11 9 14 14 C 1.53942 * 113.77000 * 295.86631 * 12 11 9 15 15 C 1.53947 * 86.28868 * 222.09433 * 14 12 11 16 16 N 1.47580 * 113.76842 * 199.36623 * 12 11 9 17 17 C 1.36931 * 134.49458 * 318.94844 * 16 12 11 18 18 H 1.08004 * 120.00204 * 5.44985 * 17 16 12 19 19 C 1.38818 * 120.00421 * 185.45459 * 17 16 12 20 20 N 1.31628 * 119.99469 * 359.97438 * 19 17 16 21 21 Si 1.86794 * 120.00620 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47103 * 89.99594 * 21 19 17 23 23 H 1.48492 * 109.47085 * 210.00238 * 21 19 17 24 24 H 1.48500 * 109.46796 * 330.00271 * 21 19 17 25 25 C 1.39659 * 119.11921 * 0.25445 * 6 5 4 26 26 N 1.31484 * 120.70846 * 0.02562 * 25 6 5 27 27 H 4.51266 * 14.17632 * 359.97438 * 4 2 1 28 28 H 1.07995 * 120.40028 * 359.97438 * 4 3 2 29 29 H 1.08000 * 120.79620 * 179.76025 * 5 4 3 30 30 H 1.09000 * 109.47590 * 94.96642 * 10 9 7 31 31 H 1.08999 * 109.47179 * 214.97235 * 10 9 7 32 32 H 1.09002 * 109.47153 * 334.96409 * 10 9 7 33 33 H 1.09006 * 109.46874 * 214.78895 * 11 9 7 34 34 H 1.08995 * 109.46631 * 334.78535 * 11 9 7 35 35 H 1.09000 * 113.74077 * 336.43288 * 14 12 11 36 36 H 1.08995 * 113.74677 * 107.64254 * 14 12 11 37 37 H 1.08999 * 113.77496 * 137.90983 * 15 14 12 38 38 H 1.09006 * 113.76571 * 269.19384 * 15 14 12 39 39 H 0.96995 * 119.99568 * 180.02562 * 20 19 17 40 40 H 1.07995 * 119.64720 * 180.02562 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.2963 -0.7730 0.9367 5 6 4.6760 -0.7623 0.9328 6 6 5.3343 0.0221 -0.0254 7 6 6.8096 0.0621 -0.0742 8 8 7.4556 -0.0789 0.9461 9 7 7.4401 0.2550 -1.2496 10 6 6.6631 0.5262 -2.4617 11 6 8.9024 0.1934 -1.3154 12 6 9.3356 -1.2153 -1.7261 13 1 9.0589 -1.4635 -2.7508 14 6 8.9625 -2.3024 -0.7020 15 6 10.3636 -2.8856 -0.9606 16 7 10.7396 -1.5261 -1.3946 17 6 11.9180 -0.8320 -1.4623 18 1 11.9152 0.2105 -1.7448 19 6 13.1163 -1.4680 -1.1679 20 7 13.1196 -2.7383 -0.8232 21 14 14.7238 -0.5213 -1.2610 22 1 15.0129 0.0942 0.0591 23 1 15.8242 -1.4491 -1.6263 24 1 14.6122 0.5437 -2.2898 25 6 4.5760 0.7647 -0.9332 26 7 3.2621 0.7331 -0.8944 27 1 -1.0500 -0.0001 0.0009 28 1 2.7565 -1.3686 1.6579 29 1 5.2356 -1.3474 1.6475 30 1 6.5966 1.6030 -2.6174 31 1 7.1538 0.0648 -3.3187 32 1 5.6608 0.1125 -2.3509 33 1 9.2636 0.9134 -2.0499 34 1 9.3203 0.4315 -0.3373 35 1 8.8252 -1.9229 0.3105 36 1 8.1487 -2.9507 -1.0268 37 1 10.8758 -3.2158 -0.0568 38 1 10.3903 -3.6268 -1.7594 39 1 13.9568 -3.1827 -0.6172 40 1 5.0741 1.3714 -1.6749 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085934312.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:58:38 Heat of formation + Delta-G solvation = 120.829914 kcal Electronic energy + Delta-G solvation = -23361.860470 eV Core-core repulsion = 19952.633656 eV Total energy + Delta-G solvation = -3409.226815 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 299.137 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.98467 -40.50961 -39.31212 -36.74191 -34.97336 -34.21900 -33.65243 -32.19633 -29.86301 -29.73069 -27.96642 -26.01731 -25.27489 -24.63201 -23.91908 -21.13491 -20.70293 -20.41902 -18.84681 -18.46065 -17.88773 -17.15455 -17.08647 -16.95205 -16.28667 -15.88364 -15.63024 -15.49568 -15.08805 -14.92567 -14.35672 -14.27896 -14.11350 -13.85659 -13.64553 -13.35811 -12.94963 -12.75154 -12.58862 -12.49256 -12.27071 -12.20143 -11.87772 -11.82616 -11.60504 -11.28709 -11.16602 -11.05666 -10.85400 -10.59681 -9.89315 -9.69526 -8.89063 -7.89392 -5.22305 -0.72038 0.09150 1.42945 1.44865 1.47642 1.55366 1.64757 1.79419 2.12143 2.49349 2.87139 2.92397 3.27372 3.36217 3.47497 3.55599 3.72720 3.88614 3.95161 4.05408 4.17839 4.21884 4.30257 4.46513 4.51250 4.60065 4.71251 4.76377 4.83227 4.88639 4.92910 5.00231 5.04123 5.09149 5.21726 5.40733 5.45981 5.53515 5.72037 5.94196 6.31685 6.46932 6.65407 6.92166 7.05666 7.62487 8.58689 9.28911 Molecular weight = 299.14amu Principal moments of inertia in cm(-1) A = 0.037538 B = 0.002973 C = 0.002897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.723644 B = 9416.336725 C = 9662.928734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.216 4.216 3 C 0.235 3.765 4 C -0.147 4.147 5 C -0.021 4.021 6 C -0.187 4.187 7 C 0.557 3.443 8 O -0.569 6.569 9 N -0.596 5.596 10 C 0.048 3.952 11 C 0.129 3.871 12 C 0.135 3.865 13 H 0.063 0.937 14 C -0.135 4.135 15 C 0.160 3.840 16 N -0.629 5.629 17 C -0.226 4.226 18 H 0.089 0.911 19 C -0.074 4.074 20 N -0.958 5.958 21 Si 0.978 3.022 22 H -0.289 1.289 23 H -0.296 1.296 24 H -0.263 1.263 25 C 0.129 3.871 26 N -0.492 5.492 27 H 0.272 0.728 28 H 0.171 0.829 29 H 0.152 0.848 30 H 0.093 0.907 31 H 0.087 0.913 32 H 0.097 0.903 33 H 0.090 0.910 34 H 0.060 0.940 35 H 0.068 0.932 36 H 0.073 0.927 37 H 0.029 0.971 38 H 0.021 0.979 39 H 0.247 0.753 40 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.614 6.219 -1.800 27.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.216 4.216 3 C 0.100 3.900 4 C -0.166 4.166 5 C -0.048 4.048 6 C -0.193 4.193 7 C 0.346 3.654 8 O -0.449 6.449 9 N -0.327 5.327 10 C -0.093 4.093 11 C 0.005 3.995 12 C 0.028 3.972 13 H 0.080 0.920 14 C -0.173 4.173 15 C 0.034 3.966 16 N -0.356 5.356 17 C -0.354 4.354 18 H 0.107 0.893 19 C -0.266 4.266 20 N -0.607 5.607 21 Si 0.806 3.194 22 H -0.216 1.216 23 H -0.223 1.223 24 H -0.188 1.188 25 C -0.029 4.029 26 N -0.201 5.201 27 H 0.288 0.712 28 H 0.189 0.811 29 H 0.170 0.830 30 H 0.111 0.889 31 H 0.105 0.895 32 H 0.115 0.885 33 H 0.108 0.892 34 H 0.078 0.922 35 H 0.087 0.913 36 H 0.091 0.909 37 H 0.047 0.953 38 H 0.039 0.961 39 H 0.056 0.944 40 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -26.371 6.704 -1.892 27.276 hybrid contribution 1.969 -0.522 0.635 2.134 sum -24.402 6.183 -1.257 25.204 Atomic orbital electron populations 1.25982 0.96315 0.93917 0.94299 1.19603 0.91518 1.05331 1.05179 1.17118 0.89238 0.92230 0.91376 1.22216 0.93669 1.00494 1.00251 1.21789 0.94333 0.94020 0.94610 1.20981 0.93362 1.03941 1.00966 1.18381 0.87349 0.76321 0.83339 1.90813 1.68024 1.51230 1.34844 1.47670 1.06685 1.69427 1.08936 1.22822 0.97226 1.03080 0.86222 1.21453 0.78611 0.97180 1.02269 1.22672 0.83873 0.94090 0.96566 0.91990 1.23540 0.96414 0.98014 0.99364 1.22018 0.90802 0.87598 0.96141 1.46308 1.02326 1.11994 1.74934 1.19426 0.83673 0.93694 1.38638 0.89328 1.25692 1.00994 0.96995 1.02960 1.70041 1.25723 1.11117 1.53861 0.85078 0.79007 0.77422 0.77856 1.21650 1.22260 1.18779 1.24083 0.88384 0.95076 0.95386 1.67896 1.09877 1.19544 1.22781 0.71225 0.81137 0.83048 0.88864 0.89452 0.88546 0.89220 0.92163 0.91325 0.90876 0.95255 0.96137 0.94446 0.77825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.87 19.25 74.32 1.43 0.56 16 2 C -0.22 -3.73 13.43 30.02 0.40 -3.32 16 3 C 0.23 4.81 6.59 40.58 0.27 5.08 16 4 C -0.15 -2.62 9.77 22.57 0.22 -2.40 16 5 C -0.02 -0.46 9.72 22.69 0.22 -0.24 16 6 C -0.19 -4.42 5.53 -19.96 -0.11 -4.53 16 7 C 0.56 16.75 6.94 86.73 0.60 17.35 16 8 O -0.57 -22.39 14.88 -3.97 -0.06 -22.45 16 9 N -0.60 -15.92 2.79 -850.38 -2.37 -18.29 16 10 C 0.05 0.76 8.83 127.77 1.13 1.89 16 11 C 0.13 4.45 5.46 86.38 0.47 4.92 16 12 C 0.13 5.38 4.59 45.09 0.21 5.59 16 13 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 14 C -0.14 -5.54 7.22 31.25 0.23 -5.31 16 15 C 0.16 8.15 7.39 86.48 0.64 8.79 16 16 N -0.63 -33.05 3.57 -694.05 -2.48 -35.53 16 17 C -0.23 -12.81 10.51 84.04 0.88 -11.93 16 18 H 0.09 4.70 7.83 -2.91 -0.02 4.67 16 19 C -0.07 -4.34 5.50 84.86 0.47 -3.87 16 20 N -0.96 -60.16 11.53 21.65 0.25 -59.91 16 21 Si 0.98 46.86 29.55 68.60 2.03 48.89 16 22 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 23 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16 24 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 25 C 0.13 2.54 8.63 85.09 0.73 3.28 16 26 N -0.49 -10.75 10.26 -188.03 -1.93 -12.68 16 27 H 0.27 -0.11 7.80 -4.42 -0.03 -0.14 16 28 H 0.17 2.04 8.06 -2.91 -0.02 2.01 16 29 H 0.15 3.19 7.99 -2.91 -0.02 3.17 16 30 H 0.09 1.02 7.50 -2.39 -0.02 1.00 16 31 H 0.09 1.30 8.11 -2.39 -0.02 1.28 16 32 H 0.10 1.36 4.57 -2.39 -0.01 1.35 16 33 H 0.09 2.75 8.11 -2.38 -0.02 2.73 16 34 H 0.06 2.55 7.23 -2.39 -0.02 2.54 16 35 H 0.07 3.07 6.68 -2.39 -0.02 3.05 16 36 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 37 H 0.03 1.68 7.42 -2.39 -0.02 1.66 16 38 H 0.02 1.06 8.14 -2.38 -0.02 1.04 16 39 H 0.25 15.05 8.31 -92.71 -0.77 14.28 16 40 H 0.21 2.88 4.67 -2.91 -0.01 2.86 16 Total: -1.00 -79.71 341.96 4.29 -75.43 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: 1.06 Total: 8.69 kcal Atomic # 6 Polarization: 8.05 SS G_CDS: 7.79 Total: 15.84 kcal Atomic # 7 Polarization: -119.87 SS G_CDS: -6.53 Total: -126.40 kcal Atomic # 8 Polarization: -22.39 SS G_CDS: -0.06 Total: -22.45 kcal Atomic # 14 Polarization: 46.86 SS G_CDS: 2.03 Total: 48.89 kcal Total: -79.71 4.29 -75.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085934312.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 196.258 kcal (2) G-P(sol) polarization free energy of solvation -79.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.428 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds