Wall clock time and date at job start Tue Mar 31 2020 03:56:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.39723 * 119.59276 * 268.53352 * 3 2 1 5 5 C 1.37974 * 119.20371 * 179.97438 * 4 3 2 6 6 C 1.40245 * 118.39767 * 359.97438 * 5 4 3 7 7 C 1.47671 * 120.43675 * 180.02562 * 6 5 4 8 8 O 1.21575 * 120.00457 * 359.97438 * 7 6 5 9 9 N 1.34782 * 119.99869 * 180.02562 * 7 6 5 10 10 C 1.46501 * 120.00142 * 180.02562 * 9 7 6 11 11 C 1.53002 * 109.47009 * 180.02562 * 10 9 7 12 12 H 1.08997 * 112.84804 * 43.80254 * 11 10 9 13 13 C 1.53779 * 113.61173 * 175.00177 * 11 10 9 14 14 C 1.53777 * 87.08043 * 139.98107 * 13 11 10 15 15 H 1.09004 * 113.60981 * 219.93424 * 14 13 11 16 16 N 1.46496 * 113.62108 * 89.11287 * 14 13 11 17 17 C 1.36934 * 120.00548 * 156.52575 * 16 14 13 18 18 H 1.08004 * 119.99288 * 0.02562 * 17 16 14 19 19 C 1.38805 * 120.00389 * 180.02562 * 17 16 14 20 20 N 1.31624 * 120.00257 * 180.02562 * 19 17 16 21 21 Si 1.86803 * 119.99929 * 359.97438 * 19 17 16 22 22 H 1.48498 * 109.47174 * 270.00277 * 21 19 17 23 23 H 1.48501 * 109.47062 * 30.00228 * 21 19 17 24 24 H 1.48499 * 109.46981 * 150.00382 * 21 19 17 25 25 C 1.53786 * 87.17279 * 334.52197 * 14 13 11 26 26 C 1.39653 * 119.11676 * 0.27651 * 6 5 4 27 27 N 1.31477 * 120.71484 * 359.42905 * 26 6 5 28 28 H 4.51264 * 14.17520 * 359.97438 * 4 2 1 29 29 H 1.08003 * 120.40055 * 359.95817 * 4 3 2 30 30 H 1.07998 * 120.79956 * 180.02562 * 5 4 3 31 31 H 0.97007 * 119.99492 * 359.97438 * 9 7 6 32 32 H 1.08996 * 109.46982 * 59.99614 * 10 9 7 33 33 H 1.08995 * 109.46707 * 299.99491 * 10 9 7 34 34 H 1.08996 * 113.61781 * 25.42320 * 13 11 10 35 35 H 1.09000 * 113.60892 * 254.52662 * 13 11 10 36 36 H 0.96999 * 119.99694 * 336.53100 * 16 14 13 37 37 H 0.97001 * 119.99885 * 179.97438 * 20 19 17 38 38 H 1.09002 * 113.61266 * 140.02569 * 25 14 13 39 39 H 1.09004 * 113.61439 * 270.92771 * 25 14 13 40 40 H 1.08003 * 119.64159 * 179.69883 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.2959 0.0320 1.2146 5 6 4.6757 0.0319 1.2052 6 6 5.3343 -0.0006 -0.0325 7 6 6.8096 -0.0027 -0.0950 8 8 7.4617 0.0243 0.9307 9 7 7.4335 -0.0335 -1.2894 10 6 8.8972 -0.0362 -1.3515 11 6 9.3455 -0.0730 -2.8139 12 1 8.7770 0.6070 -3.4481 13 6 10.8682 0.0441 -2.9944 14 6 10.7392 -1.0149 -4.1020 15 1 11.5458 -1.7481 -4.1009 16 7 10.4871 -0.4484 -5.4292 17 6 10.8168 -1.1603 -6.5515 18 1 11.2624 -2.1397 -6.4581 19 6 10.5784 -0.6233 -7.8091 20 7 10.8949 -1.3079 -8.8879 21 14 9.8071 1.0704 -7.9706 22 1 8.3288 0.9384 -8.0198 23 1 10.1912 1.9026 -6.8022 24 1 10.2882 1.7164 -9.2181 25 6 9.4665 -1.4980 -3.3865 26 6 4.5763 -0.0256 -1.2052 27 7 3.2624 -0.0301 -1.1556 28 1 -1.0501 0.0005 0.0000 29 1 2.7558 0.0564 2.1495 30 1 5.2349 0.0553 2.1288 31 1 6.9132 -0.0547 -2.1079 32 1 9.2813 -0.9135 -0.8310 33 1 9.2825 0.8659 -0.8764 34 1 11.4379 -0.2956 -2.1295 35 1 11.1909 1.0195 -3.3584 36 1 10.0867 0.4311 -5.5131 37 1 10.7279 -0.9327 -9.7667 38 1 8.6585 -1.7668 -4.0669 39 1 9.6538 -2.2588 -2.6286 40 1 5.0747 -0.0457 -2.1631 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086536982.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:56:06 Heat of formation + Delta-G solvation = 92.580059 kcal Electronic energy + Delta-G solvation = -22254.899373 eV Core-core repulsion = 18844.447553 eV Total energy + Delta-G solvation = -3410.451820 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 299.137 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.02067 -39.55721 -38.59049 -34.99077 -34.38503 -33.30853 -32.97669 -31.39461 -30.59403 -27.84550 -25.33611 -25.18072 -24.08725 -23.40865 -21.83583 -21.17303 -19.82576 -18.88001 -18.01139 -17.67134 -17.22087 -16.39441 -15.79529 -15.62017 -15.32900 -14.94084 -14.63067 -14.40607 -14.15724 -13.73051 -13.56663 -13.50325 -13.05897 -12.84862 -12.55886 -12.08778 -11.75908 -11.59626 -11.40433 -11.34891 -10.95715 -10.62427 -10.56089 -10.42514 -10.26699 -10.09401 -9.88247 -9.69996 -9.58375 -9.40666 -9.14302 -8.94913 -7.34122 -5.82869 -3.19428 -0.12069 0.73037 2.09277 2.14523 2.87075 2.88492 3.32384 3.34523 3.39885 3.41124 3.56875 4.08725 4.28211 4.39973 4.52916 4.56303 4.62602 4.84596 4.85734 5.01633 5.04210 5.22552 5.34368 5.38357 5.44167 5.55107 5.57469 5.69339 5.78589 5.85302 6.00301 6.07329 6.16727 6.20130 6.43132 6.57752 6.67592 6.84301 6.94231 7.23066 7.31033 7.91199 7.94760 8.36736 9.14345 9.86492 10.05438 11.35178 Molecular weight = 299.14amu Principal moments of inertia in cm(-1) A = 0.016668 B = 0.002828 C = 0.002509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1679.490404 B = 9898.989849 C =11155.158929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.155 4.155 3 C 0.247 3.753 4 C -0.153 4.153 5 C -0.014 4.014 6 C -0.180 4.180 7 C 0.561 3.439 8 O -0.537 6.537 9 N -0.717 5.717 10 C 0.131 3.869 11 C -0.125 4.125 12 H 0.091 0.909 13 C -0.147 4.147 14 C 0.172 3.828 15 H 0.071 0.929 16 N -0.730 5.730 17 C -0.247 4.247 18 H 0.092 0.908 19 C 0.006 3.994 20 N -0.931 5.931 21 Si 0.884 3.116 22 H -0.283 1.283 23 H -0.277 1.277 24 H -0.290 1.290 25 C -0.167 4.167 26 C 0.144 3.856 27 N -0.471 5.471 28 H 0.232 0.768 29 H 0.147 0.853 30 H 0.155 0.845 31 H 0.402 0.598 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.082 0.918 35 H 0.067 0.933 36 H 0.362 0.638 37 H 0.260 0.740 38 H 0.069 0.931 39 H 0.073 0.927 40 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.386 3.805 21.675 27.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.156 4.156 3 C 0.112 3.888 4 C -0.173 4.173 5 C -0.040 4.040 6 C -0.186 4.186 7 C 0.346 3.654 8 O -0.415 6.415 9 N -0.368 5.368 10 C 0.008 3.992 11 C -0.144 4.144 12 H 0.109 0.891 13 C -0.187 4.187 14 C 0.061 3.939 15 H 0.089 0.911 16 N -0.370 5.370 17 C -0.377 4.377 18 H 0.110 0.890 19 C -0.190 4.190 20 N -0.579 5.579 21 Si 0.714 3.286 22 H -0.210 1.210 23 H -0.203 1.203 24 H -0.216 1.216 25 C -0.208 4.208 26 C -0.016 4.016 27 N -0.179 5.179 28 H 0.248 0.752 29 H 0.165 0.835 30 H 0.172 0.828 31 H 0.237 0.763 32 H 0.090 0.910 33 H 0.086 0.914 34 H 0.101 0.899 35 H 0.086 0.914 36 H 0.195 0.805 37 H 0.070 0.930 38 H 0.088 0.912 39 H 0.091 0.909 40 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -16.219 3.625 21.404 27.099 hybrid contribution -0.588 1.241 0.031 1.373 sum -16.807 4.866 21.435 27.670 Atomic orbital electron populations 1.25004 0.95667 0.96146 0.97863 1.19261 0.91031 1.03061 1.02200 1.16767 0.88269 0.94667 0.89064 1.22044 0.94402 1.02007 0.98853 1.21687 0.93542 0.90535 0.98238 1.21172 0.94863 1.07003 0.95512 1.17937 0.86531 0.76885 0.83999 1.90790 1.66836 1.49968 1.33866 1.46004 1.08644 1.74199 1.07941 1.21547 0.77988 1.02229 0.97436 1.22826 0.97977 0.99951 0.93623 0.89113 1.23439 0.93876 1.01251 1.00130 1.20999 0.94836 0.93944 0.84159 0.91140 1.42510 1.74597 1.18948 1.00963 1.19102 1.34625 1.00702 0.83276 0.89028 1.24686 1.01080 0.97978 0.95288 1.69699 1.53114 1.37876 0.97178 0.86567 0.79461 0.85470 0.77126 1.21003 1.20325 1.21649 1.23918 1.02601 0.94236 1.00032 1.23012 0.88765 0.91977 0.97886 1.67772 1.09679 1.12298 1.28103 0.75174 0.83485 0.82763 0.76269 0.91008 0.91415 0.89916 0.91377 0.80521 0.92958 0.91184 0.90877 0.81599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.82 19.25 29.55 0.57 -0.25 16 2 C -0.15 -1.43 13.43 -38.84 -0.52 -1.95 16 3 C 0.25 2.51 6.59 -84.91 -0.56 1.96 16 4 C -0.15 -1.24 9.77 -39.12 -0.38 -1.62 16 5 C -0.01 -0.12 9.70 -38.92 -0.38 -0.50 16 6 C -0.18 -1.82 5.89 -104.76 -0.62 -2.44 16 7 C 0.56 6.65 7.77 -12.41 -0.10 6.56 16 8 O -0.54 -8.01 16.41 5.30 0.09 -7.92 16 9 N -0.72 -7.64 5.51 -61.31 -0.34 -7.98 16 10 C 0.13 1.51 5.51 -4.04 -0.02 1.49 16 11 C -0.13 -1.61 3.65 -89.67 -0.33 -1.94 16 12 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 13 C -0.15 -2.08 7.38 -25.92 -0.19 -2.27 16 14 C 0.17 3.08 4.55 -67.12 -0.31 2.78 16 15 H 0.07 1.31 8.11 -51.93 -0.42 0.89 16 16 N -0.73 -16.42 5.11 -52.64 -0.27 -16.69 16 17 C -0.25 -6.77 10.45 -15.06 -0.16 -6.93 16 18 H 0.09 2.70 8.06 -52.48 -0.42 2.27 16 19 C 0.01 0.16 5.50 -17.43 -0.10 0.07 16 20 N -0.93 -28.78 13.97 55.49 0.78 -28.01 16 21 Si 0.88 21.51 27.74 -169.99 -4.71 16.79 16 22 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 23 H -0.28 -6.31 6.52 56.52 0.37 -5.94 16 24 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 25 C -0.17 -2.49 7.45 -25.77 -0.19 -2.68 16 26 C 0.14 1.41 10.70 -17.18 -0.18 1.22 16 27 N -0.47 -5.35 10.26 -10.79 -0.11 -5.46 16 28 H 0.23 0.48 7.80 -54.09 -0.42 0.05 16 29 H 0.15 0.78 8.06 -52.48 -0.42 0.36 16 30 H 0.15 1.21 7.73 -52.49 -0.41 0.80 16 31 H 0.40 3.55 6.52 -40.82 -0.27 3.28 16 32 H 0.07 0.86 7.85 -51.93 -0.41 0.46 16 33 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.08 1.00 8.10 -51.93 -0.42 0.58 16 35 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.36 7.97 5.76 -40.82 -0.24 7.73 16 37 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 38 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 39 H 0.07 0.98 7.90 -51.93 -0.41 0.57 16 40 H 0.17 1.25 6.40 -52.48 -0.34 0.92 16 LS Contribution 350.51 15.07 5.28 5.28 Total: -1.00 -34.20 350.51 -7.78 -41.98 By element: Atomic # 1 Polarization: 13.55 SS G_CDS: -5.03 Total: 8.52 kcal Atomic # 6 Polarization: -3.06 SS G_CDS: -3.46 Total: -6.52 kcal Atomic # 7 Polarization: -58.19 SS G_CDS: 0.06 Total: -58.13 kcal Atomic # 8 Polarization: -8.01 SS G_CDS: 0.09 Total: -7.92 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.71 Total: 16.79 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -34.20 -7.78 -41.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086536982.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.561 kcal (2) G-P(sol) polarization free energy of solvation -34.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.981 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds