Wall clock time and date at job start Tue Mar 31 2020 03:56:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.39723 * 119.59276 * 268.53352 * 3 2 1 5 5 C 1.37974 * 119.20371 * 179.97438 * 4 3 2 6 6 C 1.40245 * 118.39767 * 359.97438 * 5 4 3 7 7 C 1.47671 * 120.43675 * 180.02562 * 6 5 4 8 8 O 1.21575 * 120.00457 * 359.97438 * 7 6 5 9 9 N 1.34782 * 119.99869 * 180.02562 * 7 6 5 10 10 C 1.46501 * 120.00142 * 180.02562 * 9 7 6 11 11 C 1.53002 * 109.47009 * 180.02562 * 10 9 7 12 12 H 1.08997 * 112.84804 * 43.80254 * 11 10 9 13 13 C 1.53779 * 113.61173 * 175.00177 * 11 10 9 14 14 C 1.53777 * 87.08043 * 139.98107 * 13 11 10 15 15 H 1.09004 * 113.60981 * 219.93424 * 14 13 11 16 16 N 1.46496 * 113.62108 * 89.11287 * 14 13 11 17 17 C 1.36934 * 120.00548 * 156.52575 * 16 14 13 18 18 H 1.08004 * 119.99288 * 0.02562 * 17 16 14 19 19 C 1.38805 * 120.00389 * 180.02562 * 17 16 14 20 20 N 1.31624 * 120.00257 * 180.02562 * 19 17 16 21 21 Si 1.86803 * 119.99929 * 359.97438 * 19 17 16 22 22 H 1.48498 * 109.47174 * 270.00277 * 21 19 17 23 23 H 1.48501 * 109.47062 * 30.00228 * 21 19 17 24 24 H 1.48499 * 109.46981 * 150.00382 * 21 19 17 25 25 C 1.53786 * 87.17279 * 334.52197 * 14 13 11 26 26 C 1.39653 * 119.11676 * 0.27651 * 6 5 4 27 27 N 1.31477 * 120.71484 * 359.42905 * 26 6 5 28 28 H 4.51264 * 14.17520 * 359.97438 * 4 2 1 29 29 H 1.08003 * 120.40055 * 359.95817 * 4 3 2 30 30 H 1.07998 * 120.79956 * 180.02562 * 5 4 3 31 31 H 0.97007 * 119.99492 * 359.97438 * 9 7 6 32 32 H 1.08996 * 109.46982 * 59.99614 * 10 9 7 33 33 H 1.08995 * 109.46707 * 299.99491 * 10 9 7 34 34 H 1.08996 * 113.61781 * 25.42320 * 13 11 10 35 35 H 1.09000 * 113.60892 * 254.52662 * 13 11 10 36 36 H 0.96999 * 119.99694 * 336.53100 * 16 14 13 37 37 H 0.97001 * 119.99885 * 179.97438 * 20 19 17 38 38 H 1.09002 * 113.61266 * 140.02569 * 25 14 13 39 39 H 1.09004 * 113.61439 * 270.92771 * 25 14 13 40 40 H 1.08003 * 119.64159 * 179.69883 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.2959 0.0320 1.2146 5 6 4.6757 0.0319 1.2052 6 6 5.3343 -0.0006 -0.0325 7 6 6.8096 -0.0027 -0.0950 8 8 7.4617 0.0243 0.9307 9 7 7.4335 -0.0335 -1.2894 10 6 8.8972 -0.0362 -1.3515 11 6 9.3455 -0.0730 -2.8139 12 1 8.7770 0.6070 -3.4481 13 6 10.8682 0.0441 -2.9944 14 6 10.7392 -1.0149 -4.1020 15 1 11.5458 -1.7481 -4.1009 16 7 10.4871 -0.4484 -5.4292 17 6 10.8168 -1.1603 -6.5515 18 1 11.2624 -2.1397 -6.4581 19 6 10.5784 -0.6233 -7.8091 20 7 10.8949 -1.3079 -8.8879 21 14 9.8071 1.0704 -7.9706 22 1 8.3288 0.9384 -8.0198 23 1 10.1912 1.9026 -6.8022 24 1 10.2882 1.7164 -9.2181 25 6 9.4665 -1.4980 -3.3865 26 6 4.5763 -0.0256 -1.2052 27 7 3.2624 -0.0301 -1.1556 28 1 -1.0501 0.0005 0.0000 29 1 2.7558 0.0564 2.1495 30 1 5.2349 0.0553 2.1288 31 1 6.9132 -0.0547 -2.1079 32 1 9.2813 -0.9135 -0.8310 33 1 9.2825 0.8659 -0.8764 34 1 11.4379 -0.2956 -2.1295 35 1 11.1909 1.0195 -3.3584 36 1 10.0867 0.4311 -5.5131 37 1 10.7279 -0.9327 -9.7667 38 1 8.6585 -1.7668 -4.0669 39 1 9.6538 -2.2588 -2.6286 40 1 5.0747 -0.0457 -2.1631 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086536982.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:56:05 Heat of formation + Delta-G solvation = 68.940162 kcal Electronic energy + Delta-G solvation = -22255.924476 eV Core-core repulsion = 18844.447553 eV Total energy + Delta-G solvation = -3411.476923 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 299.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.78490 -40.54726 -39.74065 -36.16995 -35.18597 -34.84391 -33.68050 -32.74225 -31.87703 -28.95536 -26.45288 -26.20236 -25.19026 -24.73016 -23.13295 -22.03180 -20.42414 -20.24850 -19.56936 -18.92504 -18.01102 -17.00645 -16.77853 -16.56939 -16.51506 -16.07370 -16.01475 -15.38341 -15.26243 -14.92919 -14.67076 -14.61189 -14.29681 -14.06955 -13.72100 -13.34145 -13.09343 -12.99980 -12.65926 -12.34802 -12.23921 -11.95431 -11.88202 -11.67758 -11.55882 -11.29566 -11.12555 -10.94574 -10.85953 -10.64074 -10.23716 -9.91097 -9.28510 -8.02105 -5.35666 -0.81919 0.06597 1.37797 1.38150 1.41982 1.49301 1.59382 2.02030 2.12822 2.48727 2.85427 2.88429 3.28458 3.44061 3.52759 3.56747 3.69062 3.74630 3.82119 3.94691 4.00136 4.02635 4.28757 4.38485 4.47899 4.63277 4.72249 4.77672 4.90571 4.95115 4.99156 5.00732 5.09636 5.22392 5.33297 5.38542 5.46206 5.55937 5.81685 6.23361 6.38361 6.42244 6.62377 7.04015 7.08822 7.85863 8.04229 9.19436 Molecular weight = 299.14amu Principal moments of inertia in cm(-1) A = 0.016668 B = 0.002828 C = 0.002509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1679.490404 B = 9898.989849 C =11155.158929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.219 4.219 3 C 0.235 3.765 4 C -0.146 4.146 5 C -0.014 4.014 6 C -0.192 4.192 7 C 0.564 3.436 8 O -0.571 6.571 9 N -0.711 5.711 10 C 0.138 3.862 11 C -0.106 4.106 12 H 0.092 0.908 13 C -0.131 4.131 14 C 0.143 3.857 15 H 0.056 0.944 16 N -0.734 5.734 17 C -0.231 4.231 18 H 0.056 0.944 19 C -0.067 4.067 20 N -0.985 5.985 21 Si 0.956 3.044 22 H -0.276 1.276 23 H -0.249 1.249 24 H -0.299 1.299 25 C -0.156 4.156 26 C 0.143 3.857 27 N -0.501 5.501 28 H 0.272 0.728 29 H 0.175 0.825 30 H 0.164 0.836 31 H 0.411 0.589 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.108 0.892 35 H 0.067 0.933 36 H 0.367 0.633 37 H 0.257 0.743 38 H 0.053 0.947 39 H 0.091 0.909 40 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.472 5.360 23.900 30.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.220 4.220 3 C 0.101 3.899 4 C -0.166 4.166 5 C -0.040 4.040 6 C -0.197 4.197 7 C 0.351 3.649 8 O -0.451 6.451 9 N -0.362 5.362 10 C 0.015 3.985 11 C -0.125 4.125 12 H 0.110 0.890 13 C -0.170 4.170 14 C 0.034 3.966 15 H 0.074 0.926 16 N -0.375 5.375 17 C -0.362 4.362 18 H 0.074 0.926 19 C -0.258 4.258 20 N -0.636 5.636 21 Si 0.783 3.217 22 H -0.202 1.202 23 H -0.174 1.174 24 H -0.226 1.226 25 C -0.196 4.196 26 C -0.017 4.017 27 N -0.210 5.210 28 H 0.288 0.712 29 H 0.192 0.808 30 H 0.181 0.819 31 H 0.248 0.752 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.126 0.874 35 H 0.086 0.914 36 H 0.201 0.799 37 H 0.066 0.934 38 H 0.072 0.928 39 H 0.110 0.890 40 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -18.318 5.182 23.688 30.390 hybrid contribution 0.004 0.633 -0.589 0.865 sum -18.315 5.815 23.099 30.047 Atomic orbital electron populations 1.26010 0.96370 0.92985 0.95029 1.19661 0.91652 1.05735 1.04922 1.17152 0.89217 0.94122 0.89395 1.22283 0.94048 1.00874 0.99387 1.21884 0.94016 0.89905 0.98221 1.21075 0.93844 1.08560 0.96268 1.18110 0.87067 0.76050 0.83633 1.90770 1.67618 1.51801 1.34942 1.45933 1.08440 1.73591 1.08199 1.21404 0.78467 1.02490 0.96119 1.22648 0.97287 0.98135 0.94445 0.88974 1.23335 0.95090 0.99679 0.98938 1.21358 0.96107 0.95671 0.83454 0.92620 1.42429 1.74892 1.18916 1.01311 1.19055 1.32542 0.99516 0.85080 0.92622 1.25532 1.02745 1.02631 0.94869 1.69892 1.55701 1.40246 0.97716 0.85399 0.78492 0.80347 0.77480 1.20250 1.17363 1.22590 1.23770 0.99929 0.96202 0.99712 1.23229 0.88523 0.91456 0.98481 1.67786 1.10286 1.13684 1.29195 0.71229 0.80806 0.81893 0.75162 0.91001 0.90987 0.87380 0.91438 0.79940 0.93381 0.92827 0.89019 0.80078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.86 19.25 74.32 1.43 0.57 16 2 C -0.22 -3.73 13.43 30.02 0.40 -3.33 16 3 C 0.24 4.61 6.59 40.58 0.27 4.88 16 4 C -0.15 -2.17 9.77 22.57 0.22 -1.95 16 5 C -0.01 -0.24 9.70 22.70 0.22 -0.02 16 6 C -0.19 -3.70 5.89 -19.96 -0.12 -3.82 16 7 C 0.56 12.64 7.77 86.73 0.67 13.32 16 8 O -0.57 -16.38 16.41 -3.95 -0.06 -16.44 16 9 N -0.71 -13.72 5.51 -466.14 -2.57 -16.29 16 10 C 0.14 2.83 5.51 86.38 0.48 3.31 16 11 C -0.11 -2.46 3.65 -10.18 -0.04 -2.50 16 12 H 0.09 2.17 8.14 -2.39 -0.02 2.16 16 13 C -0.13 -3.35 7.38 31.12 0.23 -3.12 16 14 C 0.14 4.99 4.55 45.52 0.21 5.20 16 15 H 0.06 2.08 8.11 -2.39 -0.02 2.06 16 16 N -0.73 -32.52 5.11 -320.45 -1.64 -34.16 16 17 C -0.23 -12.90 10.45 84.03 0.88 -12.02 16 18 H 0.06 3.44 8.06 -2.91 -0.02 3.41 16 19 C -0.07 -3.87 5.50 84.86 0.47 -3.41 16 20 N -0.99 -62.86 13.97 21.65 0.30 -62.56 16 21 Si 0.96 44.44 27.74 68.60 1.90 46.34 16 22 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 23 H -0.25 -10.30 6.52 99.48 0.65 -9.65 16 24 H -0.30 -14.26 7.11 99.48 0.71 -13.55 16 25 C -0.16 -4.39 7.45 31.21 0.23 -4.16 16 26 C 0.14 2.68 10.70 85.09 0.91 3.59 16 27 N -0.50 -11.13 10.26 -188.04 -1.93 -13.06 16 28 H 0.27 -0.07 7.80 -4.41 -0.03 -0.11 16 29 H 0.17 1.48 8.06 -2.91 -0.02 1.46 16 30 H 0.16 2.36 7.73 -2.91 -0.02 2.34 16 31 H 0.41 6.41 6.52 -92.70 -0.60 5.81 16 32 H 0.07 1.53 7.85 -2.39 -0.02 1.51 16 33 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.11 2.25 8.10 -2.39 -0.02 2.23 16 35 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.37 15.43 5.76 -92.71 -0.53 14.89 16 37 H 0.26 15.66 8.31 -92.71 -0.77 14.89 16 38 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 39 H 0.09 2.26 7.90 -2.39 -0.02 2.24 16 40 H 0.18 2.53 6.40 -2.91 -0.02 2.51 16 Total: -1.00 -76.63 350.51 2.34 -74.29 By element: Atomic # 1 Polarization: 25.48 SS G_CDS: -0.12 Total: 25.36 kcal Atomic # 6 Polarization: -9.93 SS G_CDS: 6.46 Total: -3.47 kcal Atomic # 7 Polarization: -120.24 SS G_CDS: -5.83 Total: -126.08 kcal Atomic # 8 Polarization: -16.38 SS G_CDS: -0.06 Total: -16.44 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 1.90 Total: 46.34 kcal Total: -76.63 2.34 -74.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086536982.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.229 kcal (2) G-P(sol) polarization free energy of solvation -76.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.289 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds