Wall clock time and date at job start Tue Mar 31 2020 03:55:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17394 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39631 * 120.48926 * 169.62736 * 3 2 1 5 5 N 1.31754 * 120.88364 * 179.97438 * 4 3 2 6 6 C 1.31730 * 122.04005 * 359.97438 * 5 4 3 7 7 C 1.39603 * 120.87540 * 359.97438 * 6 5 4 8 8 C 1.47868 * 120.49057 * 179.97438 * 7 6 5 9 9 O 1.21548 * 120.00014 * 180.02562 * 8 7 6 10 10 N 1.34774 * 119.99587 * 0.05476 * 8 7 6 11 11 C 1.46504 * 119.99463 * 179.97438 * 10 8 7 12 12 C 1.53008 * 109.46970 * 179.97438 * 11 10 8 13 13 C 1.53777 * 113.61445 * 274.13608 * 12 11 10 14 14 C 1.53955 * 87.01751 * 220.04702 * 13 12 11 15 15 N 1.46495 * 113.53580 * 270.80887 * 14 13 12 16 16 C 1.36942 * 120.00251 * 252.49136 * 15 14 13 17 17 H 1.07999 * 119.99525 * 0.02562 * 16 15 14 18 18 C 1.38816 * 120.00015 * 179.97438 * 16 15 14 19 19 N 1.31615 * 120.00163 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 119.99902 * 180.02562 * 18 16 15 21 21 H 1.48509 * 109.47360 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.47527 * 120.00244 * 20 18 16 23 23 H 1.48501 * 109.47306 * 240.00464 * 20 18 16 24 24 C 1.53777 * 113.61332 * 176.52476 * 12 11 10 25 25 C 1.39678 * 120.48945 * 349.60903 * 3 2 1 26 26 H 4.52734 * 13.92750 * 0.02562 * 4 2 1 27 27 H 1.08001 * 119.56006 * 359.97438 * 4 3 2 28 28 H 1.07996 * 119.56465 * 179.97438 * 6 5 4 29 29 H 0.97003 * 120.00666 * 359.97438 * 10 8 7 30 30 H 1.08995 * 109.47056 * 299.98758 * 11 10 8 31 31 H 1.08999 * 109.47373 * 60.00027 * 11 10 8 32 32 H 1.09005 * 112.84694 * 45.32991 * 12 11 10 33 33 H 1.08997 * 113.61702 * 334.56647 * 13 12 11 34 34 H 1.08998 * 113.61546 * 105.47005 * 13 12 11 35 35 H 1.08996 * 113.74111 * 139.94495 * 14 13 12 36 36 H 0.96997 * 120.00095 * 72.50190 * 15 14 13 37 37 H 0.97001 * 120.00216 * 179.97438 * 19 18 16 38 38 H 1.09003 * 113.61875 * 254.52890 * 24 12 11 39 39 H 1.09002 * 113.61253 * 25.43920 * 24 12 11 40 40 H 1.07999 * 120.92008 * 0.02562 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3139 1.1845 -0.2166 5 7 4.6314 1.1941 -0.2178 6 6 5.3384 0.1010 -0.0166 7 6 4.7119 -1.1260 0.2091 8 6 5.5139 -2.3479 0.4334 9 8 4.9592 -3.4116 0.6286 10 7 6.8600 -2.2819 0.4220 11 6 7.6545 -3.4924 0.6448 12 6 9.1431 -3.1443 0.5810 13 6 9.7191 -3.1612 -0.8448 14 6 10.9743 -3.8194 -0.2435 15 7 11.9821 -2.8556 0.2055 16 6 13.1421 -2.6970 -0.5047 17 1 13.3138 -3.2821 -1.3961 18 6 14.0969 -1.7833 -0.0795 19 7 13.8874 -1.0700 1.0065 20 14 15.6789 -1.5664 -1.0487 21 1 15.6706 -2.4786 -2.2206 22 1 15.7840 -0.1610 -1.5168 23 1 16.8397 -1.8868 -0.1797 24 6 10.0677 -4.3344 0.8869 25 6 3.3152 -1.1829 0.2171 26 1 -1.0500 -0.0010 0.0007 27 1 2.7743 2.1047 -0.3855 28 1 6.4170 0.1546 -0.0264 29 1 7.3028 -1.4330 0.2663 30 1 7.4196 -3.9058 1.6256 31 1 7.4204 -4.2276 -0.1251 32 1 9.3914 -2.2431 1.1416 33 1 9.1717 -3.8091 -1.5292 34 1 9.8998 -2.1674 -1.2545 35 1 11.3933 -4.6124 -0.8628 36 1 11.8278 -2.3300 1.0060 37 1 14.5547 -0.4318 1.3039 38 1 10.5295 -4.2865 1.8731 39 1 9.6157 -5.3038 0.6766 40 1 2.7988 -2.1160 0.3877 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001091225151.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:55:38 Heat of formation + Delta-G solvation = 84.540795 kcal Electronic energy + Delta-G solvation = -22186.666543 eV Core-core repulsion = 18775.866114 eV Total energy + Delta-G solvation = -3410.800429 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 299.137 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.97988 -39.46254 -38.44575 -35.04244 -34.60574 -33.30645 -32.69319 -31.10195 -30.12938 -27.58636 -25.12818 -24.98429 -24.35129 -23.56684 -21.81501 -21.32096 -19.53595 -18.39240 -17.80441 -17.33346 -17.24406 -16.76911 -15.70786 -15.55595 -15.37141 -14.94967 -14.48563 -14.23191 -14.08337 -13.71551 -13.49804 -13.27530 -13.00805 -12.89315 -12.32028 -12.09314 -11.96457 -11.46050 -11.26928 -11.07487 -10.88688 -10.64397 -10.49972 -10.19125 -10.15872 -10.01122 -9.77404 -9.72650 -9.52559 -9.30416 -9.09376 -8.91948 -7.03188 -5.83710 -3.12828 0.08023 0.51778 2.20876 2.33189 2.86477 2.95008 3.39853 3.45987 3.47989 3.56765 3.65179 3.91835 4.31646 4.39174 4.47496 4.53321 4.73813 4.94949 4.99699 5.05058 5.17872 5.39139 5.42210 5.53861 5.56387 5.58940 5.66049 5.81633 5.89934 6.03340 6.05364 6.17150 6.27767 6.33475 6.54192 6.70334 6.84778 7.00066 7.00171 7.30716 7.37768 7.67057 7.97820 8.35430 9.46316 10.03489 10.37558 11.38698 Molecular weight = 299.14amu Principal moments of inertia in cm(-1) A = 0.024084 B = 0.002459 C = 0.002283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.311008 B =11385.713563 C =12263.955335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.153 4.153 3 C -0.048 4.048 4 C 0.146 3.854 5 N -0.479 5.479 6 C 0.144 3.856 7 C -0.182 4.182 8 C 0.561 3.439 9 O -0.537 6.537 10 N -0.715 5.715 11 C 0.131 3.869 12 C -0.121 4.121 13 C -0.169 4.169 14 C 0.167 3.833 15 N -0.706 5.706 16 C -0.242 4.242 17 H 0.073 0.927 18 C -0.013 4.013 19 N -0.932 5.932 20 Si 0.908 3.092 21 H -0.280 1.280 22 H -0.291 1.291 23 H -0.291 1.291 24 C -0.147 4.147 25 C 0.004 3.996 26 H 0.228 0.772 27 H 0.166 0.834 28 H 0.166 0.834 29 H 0.402 0.598 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.094 0.906 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.063 0.937 36 H 0.385 0.615 37 H 0.255 0.745 38 H 0.069 0.931 39 H 0.077 0.923 40 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.043 1.452 -1.300 24.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.154 4.154 3 C -0.050 4.050 4 C -0.011 4.011 5 N -0.187 5.187 6 C -0.014 4.014 7 C -0.187 4.187 8 C 0.347 3.653 9 O -0.416 6.416 10 N -0.366 5.366 11 C 0.008 3.992 12 C -0.140 4.140 13 C -0.210 4.210 14 C 0.055 3.945 15 N -0.344 5.344 16 C -0.373 4.373 17 H 0.091 0.909 18 C -0.209 4.209 19 N -0.580 5.580 20 Si 0.739 3.261 21 H -0.205 1.205 22 H -0.218 1.218 23 H -0.218 1.218 24 C -0.187 4.187 25 C -0.022 4.022 26 H 0.244 0.756 27 H 0.183 0.817 28 H 0.183 0.817 29 H 0.238 0.762 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.112 0.888 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.081 0.919 36 H 0.219 0.781 37 H 0.065 0.935 38 H 0.088 0.912 39 H 0.096 0.904 40 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -23.752 1.457 -1.414 23.839 hybrid contribution 0.366 0.075 -0.121 0.393 sum -23.386 1.531 -1.535 23.486 Atomic orbital electron populations 1.24944 0.95729 0.98139 0.98528 1.19567 0.91443 1.02357 1.02023 1.16854 0.88228 0.94845 1.05120 1.23191 0.89698 0.96986 0.91268 1.67758 1.07529 1.30061 1.13304 1.23202 1.00786 0.86758 0.90632 1.20989 0.94741 0.95637 1.07301 1.17941 0.82368 0.87745 0.77288 1.90784 1.71415 1.29963 1.49393 1.45989 1.05468 1.13101 1.72022 1.21564 0.90100 0.86061 1.01495 1.22734 0.91061 1.00389 0.99790 1.23928 1.00475 1.02160 0.94475 1.21088 0.87912 0.92021 0.93485 1.42178 1.16852 1.44560 1.30827 1.19336 0.94220 1.17795 1.05992 0.90923 1.24769 0.98948 0.99233 0.97952 1.69665 1.35656 1.28132 1.24539 0.86100 0.83458 0.77465 0.79045 1.20493 1.21829 1.21832 1.23441 0.97572 0.96517 1.01164 1.21806 0.92395 0.98240 0.89733 0.75554 0.81659 0.81668 0.76187 0.91463 0.91221 0.88772 0.91366 0.91418 0.91916 0.78113 0.93468 0.91249 0.90417 0.83031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.99 19.25 29.55 0.57 -0.42 16 2 C -0.15 -1.31 13.27 -38.83 -0.52 -1.82 16 3 C -0.05 -0.45 5.73 -106.91 -0.61 -1.06 16 4 C 0.15 1.30 10.90 -17.07 -0.19 1.11 16 5 N -0.48 -4.96 10.33 -12.60 -0.13 -5.09 16 6 C 0.14 1.40 10.71 -17.09 -0.18 1.22 16 7 C -0.18 -1.94 5.89 -104.87 -0.62 -2.56 16 8 C 0.56 7.07 7.78 -12.32 -0.10 6.98 16 9 O -0.54 -8.49 16.41 5.32 0.09 -8.40 16 10 N -0.71 -8.15 5.51 -61.24 -0.34 -8.49 16 11 C 0.13 1.63 5.50 -4.04 -0.02 1.61 16 12 C -0.12 -1.69 3.62 -89.81 -0.33 -2.02 16 13 C -0.17 -2.67 7.44 -25.83 -0.19 -2.86 16 14 C 0.17 3.14 4.57 -67.03 -0.31 2.84 16 15 N -0.71 -16.91 5.31 -52.55 -0.28 -17.19 16 16 C -0.24 -6.54 9.97 -15.06 -0.15 -6.69 16 17 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 18 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 19 N -0.93 -27.42 13.06 55.49 0.72 -26.70 16 20 Si 0.91 21.95 29.55 -169.99 -5.02 16.92 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 22 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 23 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 24 C -0.15 -2.25 7.39 -25.92 -0.19 -2.44 16 25 C 0.00 0.04 9.44 -38.46 -0.36 -0.32 16 26 H 0.23 0.53 7.80 -54.09 -0.42 0.10 16 27 H 0.17 1.03 8.06 -52.49 -0.42 0.61 16 28 H 0.17 1.27 6.41 -52.49 -0.34 0.94 16 29 H 0.40 3.85 6.53 -40.82 -0.27 3.59 16 30 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.07 0.90 7.87 -51.93 -0.41 0.49 16 32 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 33 H 0.07 0.97 7.92 -51.93 -0.41 0.56 16 34 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.06 1.19 8.10 -51.93 -0.42 0.77 16 36 H 0.38 9.75 7.90 -40.82 -0.32 9.43 16 37 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 38 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 39 H 0.08 1.03 8.10 -51.93 -0.42 0.61 16 40 H 0.15 1.52 7.73 -52.49 -0.41 1.12 16 LS Contribution 353.57 15.07 5.33 5.33 Total: -1.00 -32.51 353.57 -7.99 -40.50 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: -5.07 Total: 10.01 kcal Atomic # 6 Polarization: -3.61 SS G_CDS: -3.29 Total: -6.90 kcal Atomic # 7 Polarization: -57.44 SS G_CDS: -0.02 Total: -57.46 kcal Atomic # 8 Polarization: -8.49 SS G_CDS: 0.09 Total: -8.40 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -32.51 -7.99 -40.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091225151.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.043 kcal (2) G-P(sol) polarization free energy of solvation -32.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.502 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds