Wall clock time and date at job start Tue Mar 31 2020 03:55:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17394 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39631 * 120.48926 * 169.62736 * 3 2 1 5 5 N 1.31754 * 120.88364 * 179.97438 * 4 3 2 6 6 C 1.31730 * 122.04005 * 359.97438 * 5 4 3 7 7 C 1.39603 * 120.87540 * 359.97438 * 6 5 4 8 8 C 1.47868 * 120.49057 * 179.97438 * 7 6 5 9 9 O 1.21548 * 120.00014 * 180.02562 * 8 7 6 10 10 N 1.34774 * 119.99587 * 0.05476 * 8 7 6 11 11 C 1.46504 * 119.99463 * 179.97438 * 10 8 7 12 12 C 1.53008 * 109.46970 * 179.97438 * 11 10 8 13 13 C 1.53777 * 113.61445 * 274.13608 * 12 11 10 14 14 C 1.53955 * 87.01751 * 220.04702 * 13 12 11 15 15 N 1.46495 * 113.53580 * 270.80887 * 14 13 12 16 16 C 1.36942 * 120.00251 * 252.49136 * 15 14 13 17 17 H 1.07999 * 119.99525 * 0.02562 * 16 15 14 18 18 C 1.38816 * 120.00015 * 179.97438 * 16 15 14 19 19 N 1.31615 * 120.00163 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 119.99902 * 180.02562 * 18 16 15 21 21 H 1.48509 * 109.47360 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.47527 * 120.00244 * 20 18 16 23 23 H 1.48501 * 109.47306 * 240.00464 * 20 18 16 24 24 C 1.53777 * 113.61332 * 176.52476 * 12 11 10 25 25 C 1.39678 * 120.48945 * 349.60903 * 3 2 1 26 26 H 4.52734 * 13.92750 * 0.02562 * 4 2 1 27 27 H 1.08001 * 119.56006 * 359.97438 * 4 3 2 28 28 H 1.07996 * 119.56465 * 179.97438 * 6 5 4 29 29 H 0.97003 * 120.00666 * 359.97438 * 10 8 7 30 30 H 1.08995 * 109.47056 * 299.98758 * 11 10 8 31 31 H 1.08999 * 109.47373 * 60.00027 * 11 10 8 32 32 H 1.09005 * 112.84694 * 45.32991 * 12 11 10 33 33 H 1.08997 * 113.61702 * 334.56647 * 13 12 11 34 34 H 1.08998 * 113.61546 * 105.47005 * 13 12 11 35 35 H 1.08996 * 113.74111 * 139.94495 * 14 13 12 36 36 H 0.96997 * 120.00095 * 72.50190 * 15 14 13 37 37 H 0.97001 * 120.00216 * 179.97438 * 19 18 16 38 38 H 1.09003 * 113.61875 * 254.52890 * 24 12 11 39 39 H 1.09002 * 113.61253 * 25.43920 * 24 12 11 40 40 H 1.07999 * 120.92008 * 0.02562 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3139 1.1845 -0.2166 5 7 4.6314 1.1941 -0.2178 6 6 5.3384 0.1010 -0.0166 7 6 4.7119 -1.1260 0.2091 8 6 5.5139 -2.3479 0.4334 9 8 4.9592 -3.4116 0.6286 10 7 6.8600 -2.2819 0.4220 11 6 7.6545 -3.4924 0.6448 12 6 9.1431 -3.1443 0.5810 13 6 9.7191 -3.1612 -0.8448 14 6 10.9743 -3.8194 -0.2435 15 7 11.9821 -2.8556 0.2055 16 6 13.1421 -2.6970 -0.5047 17 1 13.3138 -3.2821 -1.3961 18 6 14.0969 -1.7833 -0.0795 19 7 13.8874 -1.0700 1.0065 20 14 15.6789 -1.5664 -1.0487 21 1 15.6706 -2.4786 -2.2206 22 1 15.7840 -0.1610 -1.5168 23 1 16.8397 -1.8868 -0.1797 24 6 10.0677 -4.3344 0.8869 25 6 3.3152 -1.1829 0.2171 26 1 -1.0500 -0.0010 0.0007 27 1 2.7743 2.1047 -0.3855 28 1 6.4170 0.1546 -0.0264 29 1 7.3028 -1.4330 0.2663 30 1 7.4196 -3.9058 1.6256 31 1 7.4204 -4.2276 -0.1251 32 1 9.3914 -2.2431 1.1416 33 1 9.1717 -3.8091 -1.5292 34 1 9.8998 -2.1674 -1.2545 35 1 11.3933 -4.6124 -0.8628 36 1 11.8278 -2.3300 1.0060 37 1 14.5547 -0.4318 1.3039 38 1 10.5295 -4.2865 1.8731 39 1 9.6157 -5.3038 0.6766 40 1 2.7988 -2.1160 0.3877 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001091225151.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:55:37 Heat of formation + Delta-G solvation = 63.326228 kcal Electronic energy + Delta-G solvation = -22187.586476 eV Core-core repulsion = 18775.866114 eV Total energy + Delta-G solvation = -3411.720362 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 299.137 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.80133 -40.50979 -39.68564 -36.14754 -35.43616 -34.95848 -33.53290 -32.14290 -31.58218 -28.81946 -26.41749 -26.03516 -25.50797 -24.90274 -23.07592 -22.22367 -20.42668 -19.64737 -19.29941 -18.48268 -18.05276 -17.64219 -16.78021 -16.58238 -16.53775 -16.09867 -15.81178 -15.56113 -15.20242 -14.83567 -14.66626 -14.52732 -14.31137 -13.73620 -13.64954 -13.27402 -12.94510 -12.90898 -12.71771 -12.65095 -12.11915 -12.04670 -11.84703 -11.70368 -11.47072 -11.33740 -10.99119 -10.92966 -10.81534 -10.57907 -10.18116 -9.89952 -8.98140 -7.94569 -5.22334 -0.64607 -0.23513 1.48839 1.49228 1.55039 1.59081 1.64180 2.03194 2.10953 2.56569 2.84621 3.05630 3.25882 3.38351 3.61257 3.62325 3.68115 3.73867 3.80461 3.89693 4.06493 4.16476 4.32040 4.34571 4.42132 4.72359 4.74882 4.79403 4.82385 4.95602 5.00377 5.01985 5.12553 5.23657 5.36411 5.37417 5.47038 5.55393 5.68300 6.29517 6.37354 6.47840 6.65847 7.02213 7.34666 8.12310 8.34183 9.28772 Molecular weight = 299.14amu Principal moments of inertia in cm(-1) A = 0.024084 B = 0.002459 C = 0.002283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.311008 B =11385.713563 C =12263.955335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.208 4.208 3 C -0.046 4.046 4 C 0.147 3.853 5 N -0.496 5.496 6 C 0.144 3.856 7 C -0.190 4.190 8 C 0.564 3.436 9 O -0.573 6.573 10 N -0.708 5.708 11 C 0.139 3.861 12 C -0.103 4.103 13 C -0.154 4.154 14 C 0.142 3.858 15 N -0.719 5.719 16 C -0.240 4.240 17 H 0.076 0.924 18 C -0.076 4.076 19 N -0.968 5.968 20 Si 0.971 3.029 21 H -0.266 1.266 22 H -0.294 1.294 23 H -0.295 1.295 24 C -0.134 4.134 25 C -0.005 4.005 26 H 0.265 0.735 27 H 0.191 0.809 28 H 0.182 0.818 29 H 0.412 0.588 30 H 0.068 0.932 31 H 0.073 0.927 32 H 0.084 0.916 33 H 0.092 0.908 34 H 0.050 0.950 35 H 0.059 0.941 36 H 0.375 0.625 37 H 0.250 0.750 38 H 0.058 0.942 39 H 0.106 0.894 40 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.877 1.407 -2.147 26.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.209 4.209 3 C -0.048 4.048 4 C -0.010 4.010 5 N -0.203 5.203 6 C -0.014 4.014 7 C -0.195 4.195 8 C 0.351 3.649 9 O -0.454 6.454 10 N -0.359 5.359 11 C 0.016 3.984 12 C -0.122 4.122 13 C -0.194 4.194 14 C 0.032 3.968 15 N -0.358 5.358 16 C -0.372 4.372 17 H 0.094 0.906 18 C -0.268 4.268 19 N -0.619 5.619 20 Si 0.801 3.199 21 H -0.191 1.191 22 H -0.222 1.222 23 H -0.222 1.222 24 C -0.173 4.173 25 C -0.032 4.032 26 H 0.281 0.719 27 H 0.208 0.792 28 H 0.199 0.801 29 H 0.249 0.751 30 H 0.087 0.913 31 H 0.091 0.909 32 H 0.102 0.898 33 H 0.110 0.890 34 H 0.069 0.931 35 H 0.077 0.923 36 H 0.207 0.793 37 H 0.059 0.941 38 H 0.077 0.923 39 H 0.124 0.876 40 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -25.606 1.390 -2.295 25.747 hybrid contribution 0.769 0.050 0.115 0.779 sum -24.838 1.440 -2.181 24.975 Atomic orbital electron populations 1.25882 0.96440 0.95540 0.95604 1.19803 0.91857 1.04799 1.04443 1.16942 0.89094 0.94460 1.04272 1.23612 0.89389 0.97853 0.90149 1.67814 1.08318 1.30210 1.13993 1.23410 1.01548 0.86281 0.90149 1.20831 0.94765 0.95187 1.08737 1.18151 0.82501 0.87806 0.76436 1.90761 1.72057 1.31335 1.51246 1.45906 1.05223 1.13311 1.71453 1.21401 0.88811 0.86425 1.01747 1.22512 0.91982 0.99511 0.98189 1.23747 0.98764 1.01232 0.95705 1.21431 0.88171 0.91578 0.95581 1.42305 1.17381 1.45627 1.30450 1.19702 0.94994 1.16731 1.05746 0.90572 1.25530 1.02172 0.99829 0.99272 1.69807 1.36537 1.29225 1.26313 0.85105 0.79652 0.77177 0.78013 1.19087 1.22161 1.22249 1.23342 0.96575 0.98253 0.99145 1.21875 0.92431 0.98666 0.90185 0.71914 0.79232 0.80125 0.75084 0.91338 0.90877 0.89789 0.89004 0.93146 0.92269 0.79313 0.94064 0.92341 0.87571 0.83470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.17 19.25 74.32 1.43 0.26 16 2 C -0.21 -3.27 13.27 30.02 0.40 -2.87 16 3 C -0.05 -0.82 5.73 -21.35 -0.12 -0.95 16 4 C 0.15 2.46 10.90 85.04 0.93 3.39 16 5 N -0.50 -9.82 10.33 -193.76 -2.00 -11.82 16 6 C 0.14 2.71 10.71 85.04 0.91 3.62 16 7 C -0.19 -4.02 5.89 -20.02 -0.12 -4.14 16 8 C 0.56 13.96 7.78 86.79 0.68 14.64 16 9 O -0.57 -18.01 16.41 -3.87 -0.06 -18.07 16 10 N -0.71 -15.37 5.51 -465.94 -2.57 -17.94 16 11 C 0.14 3.24 5.50 86.38 0.48 3.72 16 12 C -0.10 -2.75 3.62 -10.27 -0.04 -2.79 16 13 C -0.15 -4.63 7.44 31.18 0.23 -4.40 16 14 C 0.14 5.24 4.57 45.58 0.21 5.45 16 15 N -0.72 -34.74 5.31 -320.17 -1.70 -36.44 16 16 C -0.24 -12.98 9.97 84.03 0.84 -12.15 16 17 H 0.08 3.98 7.83 -2.91 -0.02 3.95 16 18 C -0.08 -4.27 5.50 84.86 0.47 -3.80 16 19 N -0.97 -58.06 13.06 21.65 0.28 -57.77 16 20 Si 0.97 45.48 29.55 68.60 2.03 47.50 16 21 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 22 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 23 H -0.30 -13.89 7.11 99.48 0.71 -13.18 16 24 C -0.13 -3.89 7.39 31.12 0.23 -3.66 16 25 C -0.01 -0.11 9.44 22.99 0.22 0.11 16 26 H 0.26 0.12 7.80 -4.42 -0.03 0.09 16 27 H 0.19 2.05 8.06 -2.91 -0.02 2.03 16 28 H 0.18 2.62 6.41 -2.91 -0.02 2.60 16 29 H 0.41 7.42 6.53 -92.71 -0.61 6.81 16 30 H 0.07 1.63 8.14 -2.39 -0.02 1.62 16 31 H 0.07 1.71 7.87 -2.39 -0.02 1.69 16 32 H 0.08 2.46 8.14 -2.38 -0.02 2.44 16 33 H 0.09 2.36 7.92 -2.39 -0.02 2.34 16 34 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.06 2.20 8.10 -2.39 -0.02 2.18 16 36 H 0.37 19.37 7.90 -92.71 -0.73 18.63 16 37 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 38 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 39 H 0.11 2.51 8.10 -2.39 -0.02 2.49 16 40 H 0.15 3.05 7.73 -2.91 -0.02 3.03 16 Total: -1.00 -70.61 353.57 2.45 -68.16 By element: Atomic # 1 Polarization: 30.21 SS G_CDS: -0.26 Total: 29.95 kcal Atomic # 6 Polarization: -10.30 SS G_CDS: 6.73 Total: -3.57 kcal Atomic # 7 Polarization: -117.99 SS G_CDS: -5.98 Total: -123.97 kcal Atomic # 8 Polarization: -18.01 SS G_CDS: -0.06 Total: -18.07 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.50 kcal Total: -70.61 2.45 -68.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091225151.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.489 kcal (2) G-P(sol) polarization free energy of solvation -70.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.163 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds