Wall clock time and date at job start Tue Mar 31 2020 03:55:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39993 * 120.46435 * 54.77891 * 3 2 1 5 5 C 1.38215 * 118.36877 * 179.74721 * 4 3 2 6 6 C 1.39492 * 119.20822 * 0.53665 * 5 4 3 7 7 C 1.47984 * 119.57266 * 179.72912 * 6 5 4 8 8 O 1.21543 * 119.99952 * 359.72339 * 7 6 5 9 9 N 1.34777 * 120.00073 * 179.44698 * 7 6 5 10 10 C 1.46504 * 119.99858 * 180.27101 * 9 7 6 11 11 C 1.53004 * 109.46929 * 180.02562 * 10 9 7 12 12 C 1.53783 * 113.61084 * 274.13722 * 11 10 9 13 13 C 1.53950 * 87.01794 * 220.04833 * 12 11 10 14 14 N 1.46501 * 113.53839 * 270.80938 * 13 12 11 15 15 C 1.36938 * 120.00379 * 252.49538 * 14 13 12 16 16 H 1.07998 * 119.99822 * 359.97438 * 15 14 13 17 17 C 1.38815 * 119.99826 * 180.02562 * 15 14 13 18 18 N 1.31623 * 119.99563 * 180.02562 * 17 15 14 19 19 Si 1.86793 * 120.00210 * 0.02562 * 17 15 14 20 20 H 1.48495 * 109.47376 * 89.99853 * 19 17 15 21 21 H 1.48501 * 109.47321 * 210.00142 * 19 17 15 22 22 H 1.48500 * 109.47211 * 329.99665 * 19 17 15 23 23 C 1.53775 * 113.61235 * 176.53237 * 11 10 9 24 24 N 1.32834 * 120.85570 * 359.44508 * 6 5 4 25 25 C 1.31297 * 121.78879 * 0.28022 * 24 6 5 26 26 H 4.52944 * 13.94851 * 0.02562 * 4 2 1 27 27 H 1.08001 * 120.81080 * 0.02562 * 4 3 2 28 28 H 1.07996 * 120.39810 * 180.25531 * 5 4 3 29 29 H 0.97001 * 119.99727 * 0.28000 * 9 7 6 30 30 H 1.08992 * 109.47142 * 300.00148 * 10 9 7 31 31 H 1.08997 * 109.46860 * 60.00391 * 10 9 7 32 32 H 1.09003 * 112.84815 * 45.33070 * 11 10 9 33 33 H 1.09004 * 113.61586 * 334.57205 * 12 11 10 34 34 H 1.09001 * 113.61101 * 105.46879 * 12 11 10 35 35 H 1.08999 * 113.74307 * 139.94491 * 13 12 11 36 36 H 0.97000 * 119.99712 * 72.49981 * 14 13 12 37 37 H 0.96993 * 119.99590 * 179.97438 * 18 17 15 38 38 H 1.08998 * 113.61281 * 254.52332 * 23 11 10 39 39 H 1.08995 * 113.61463 * 25.43342 * 23 11 10 40 40 H 1.07994 * 119.64578 * 180.02562 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3161 -0.6950 -0.9858 5 6 4.6973 -0.6608 -0.9476 6 6 5.3327 0.0505 0.0703 7 6 6.8112 0.0874 0.1224 8 8 7.4638 -0.5038 -0.7154 9 7 7.4341 0.7812 1.0956 10 6 8.8978 0.8226 1.1436 11 6 9.3451 1.6704 2.3362 12 6 9.4222 3.1751 2.0278 13 6 10.7111 3.1996 2.8693 14 7 10.4757 3.4529 4.2929 15 6 10.8138 4.6627 4.8383 16 1 11.2545 5.4299 4.2190 17 6 10.5912 4.9024 6.1873 18 7 10.9157 6.0654 6.7113 19 14 9.8310 3.5746 7.2589 20 1 10.9065 2.7321 7.8408 21 1 9.0514 4.2075 8.3530 22 1 8.9307 2.7287 6.4349 23 6 10.8705 1.7089 2.5269 24 7 4.6280 0.6997 0.9902 25 6 3.3150 0.6963 0.9855 26 1 -1.0500 0.0000 -0.0009 27 1 2.7973 -1.2411 -1.7597 28 1 5.2777 -1.1824 -1.6942 29 1 6.9133 1.2530 1.7642 30 1 9.2865 -0.1898 1.2519 31 1 9.2792 1.2617 0.2218 32 1 8.7964 1.4394 3.2493 33 1 9.5849 3.3969 0.9731 34 1 8.6054 3.7520 2.4616 35 1 11.4961 3.8299 2.4515 36 1 10.0803 2.7637 4.8493 37 1 10.7598 6.2330 7.6539 38 1 11.2213 1.1040 3.3631 39 1 11.4299 1.5292 1.6090 40 1 2.7766 1.2365 1.7501 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001091331027.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:55:40 Heat of formation + Delta-G solvation = 88.958450 kcal Electronic energy + Delta-G solvation = -22243.751106 eV Core-core repulsion = 18833.142241 eV Total energy + Delta-G solvation = -3410.608865 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 299.137 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.98249 -39.45628 -38.51011 -34.95842 -34.71231 -33.25164 -32.65307 -31.25038 -30.59348 -27.85079 -25.30219 -25.13084 -24.05923 -23.38426 -21.79852 -21.05635 -19.61045 -18.89700 -18.03390 -17.64035 -17.19369 -16.11111 -15.79224 -15.63149 -15.35688 -14.93001 -14.54410 -14.30828 -14.17774 -13.72159 -13.53180 -13.44261 -12.92925 -12.76080 -12.51147 -12.08218 -12.02597 -11.57824 -11.41082 -11.35243 -10.91624 -10.58744 -10.49656 -10.31156 -10.22147 -10.08544 -9.86920 -9.66243 -9.53324 -9.32878 -9.03849 -8.90822 -7.30341 -5.79952 -3.16021 -0.10554 0.73496 2.11289 2.15173 2.87451 2.93867 3.35303 3.38124 3.43562 3.56864 3.57790 3.84324 4.27895 4.40760 4.56083 4.58983 4.74606 4.91886 4.95036 5.07869 5.22140 5.28318 5.39399 5.42413 5.48159 5.51430 5.60716 5.75361 5.84385 5.90776 6.04398 6.12838 6.23559 6.30289 6.48909 6.64205 6.73847 6.90361 6.91847 7.17427 7.48550 7.98079 8.02063 8.39853 9.17656 9.89942 10.09198 11.38195 Molecular weight = 299.14amu Principal moments of inertia in cm(-1) A = 0.016855 B = 0.002818 C = 0.002507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.785418 B = 9932.799167 C =11167.384633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.158 4.158 3 C -0.021 4.021 4 C -0.060 4.060 5 C -0.109 4.109 6 C 0.088 3.912 7 C 0.566 3.434 8 O -0.537 6.537 9 N -0.701 5.701 10 C 0.129 3.871 11 C -0.124 4.124 12 C -0.167 4.167 13 C 0.173 3.827 14 N -0.730 5.730 15 C -0.246 4.246 16 H 0.092 0.908 17 C 0.005 3.995 18 N -0.932 5.932 19 Si 0.884 3.116 20 H -0.284 1.284 21 H -0.290 1.290 22 H -0.277 1.277 23 C -0.148 4.148 24 N -0.453 5.453 25 C 0.127 3.873 26 H 0.228 0.772 27 H 0.146 0.854 28 H 0.155 0.845 29 H 0.413 0.587 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.091 0.909 33 H 0.072 0.928 34 H 0.069 0.931 35 H 0.072 0.928 36 H 0.362 0.638 37 H 0.260 0.740 38 H 0.067 0.933 39 H 0.082 0.918 40 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.169 -15.120 -15.851 28.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.159 4.159 3 C -0.023 4.023 4 C -0.086 4.086 5 C -0.130 4.130 6 C -0.050 4.050 7 C 0.350 3.650 8 O -0.414 6.414 9 N -0.351 5.351 10 C 0.006 3.994 11 C -0.143 4.143 12 C -0.208 4.208 13 C 0.061 3.939 14 N -0.370 5.370 15 C -0.376 4.376 16 H 0.110 0.890 17 C -0.191 4.191 18 N -0.580 5.580 19 Si 0.714 3.286 20 H -0.210 1.210 21 H -0.217 1.217 22 H -0.203 1.203 23 C -0.187 4.187 24 N -0.163 5.163 25 C -0.034 4.034 26 H 0.245 0.755 27 H 0.164 0.836 28 H 0.173 0.827 29 H 0.250 0.750 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.109 0.891 33 H 0.091 0.909 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.195 0.805 37 H 0.070 0.930 38 H 0.086 0.914 39 H 0.101 0.899 40 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -17.044 -14.814 -15.713 27.511 hybrid contribution -1.659 -1.112 0.584 2.081 sum -18.702 -15.926 -15.129 28.850 Atomic orbital electron populations 1.24992 0.95770 0.97954 0.98079 1.19645 0.91555 1.02330 1.02341 1.17169 0.88112 0.99687 0.97320 1.21685 0.93496 0.96237 0.97139 1.22066 0.94455 0.97910 0.98585 1.21369 0.94617 0.96115 0.92870 1.17802 0.85646 0.79630 0.81903 1.90794 1.65864 1.45257 1.39488 1.45938 1.08350 1.50868 1.29994 1.21568 0.78269 1.00460 0.99132 1.22762 0.97881 0.96494 0.97126 1.23888 1.02545 0.94104 1.00224 1.21040 0.94677 0.93050 0.85147 1.42520 1.74647 1.15585 1.04242 1.19114 1.34418 0.90761 0.93285 0.89026 1.24684 1.01104 0.96645 0.96657 1.69700 1.53284 1.22140 1.12835 0.86557 0.79296 0.81912 0.80791 1.21041 1.21680 1.20330 1.23456 0.93877 0.99920 1.01495 1.67611 1.08366 1.16750 1.23563 1.22991 0.88974 0.95185 0.96257 0.75513 0.83573 0.82714 0.75036 0.91458 0.91056 0.89110 0.90945 0.91243 0.91023 0.80509 0.92997 0.91385 0.89944 0.81393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 19.25 29.55 0.57 -0.27 16 2 C -0.16 -1.21 13.28 -38.84 -0.52 -1.72 16 3 C -0.02 -0.17 5.75 -106.68 -0.61 -0.79 16 4 C -0.06 -0.46 9.89 -38.93 -0.39 -0.84 16 5 C -0.11 -1.02 9.61 -39.12 -0.38 -1.39 16 6 C 0.09 1.01 6.75 -82.97 -0.56 0.45 16 7 C 0.57 7.58 7.80 -12.27 -0.10 7.48 16 8 O -0.54 -8.40 16.31 5.33 0.09 -8.31 16 9 N -0.70 -8.93 5.54 -61.20 -0.34 -9.26 16 10 C 0.13 1.65 5.50 -4.04 -0.02 1.62 16 11 C -0.12 -1.75 3.62 -89.81 -0.33 -2.07 16 12 C -0.17 -2.66 7.44 -25.83 -0.19 -2.85 16 13 C 0.17 3.20 4.57 -67.03 -0.31 2.89 16 14 N -0.73 -16.86 5.11 -52.55 -0.27 -17.13 16 15 C -0.25 -6.85 10.45 -15.06 -0.16 -7.01 16 16 H 0.09 2.73 8.06 -52.49 -0.42 2.31 16 17 C 0.00 0.14 5.50 -17.43 -0.10 0.05 16 18 N -0.93 -29.08 13.97 55.49 0.78 -28.31 16 19 Si 0.88 21.87 27.74 -169.99 -4.71 17.16 16 20 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 21 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16 22 H -0.28 -6.42 6.52 56.52 0.37 -6.05 16 23 C -0.15 -2.18 7.39 -25.92 -0.19 -2.38 16 24 N -0.45 -5.02 9.51 -9.49 -0.09 -5.11 16 25 C 0.13 1.15 10.92 -17.15 -0.19 0.96 16 26 H 0.23 0.38 7.80 -54.09 -0.42 -0.05 16 27 H 0.15 0.73 8.06 -52.49 -0.42 0.31 16 28 H 0.16 1.30 7.63 -52.49 -0.40 0.90 16 29 H 0.41 5.05 7.79 -40.82 -0.32 4.73 16 30 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.07 0.92 7.88 -51.93 -0.41 0.52 16 32 H 0.09 1.36 8.14 -51.93 -0.42 0.93 16 33 H 0.07 1.04 7.92 -51.93 -0.41 0.63 16 34 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.07 1.36 8.10 -51.93 -0.42 0.94 16 36 H 0.36 8.21 5.76 -40.82 -0.24 7.97 16 37 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 38 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.08 1.05 8.10 -51.93 -0.42 0.63 16 40 H 0.17 1.16 8.06 -52.49 -0.42 0.74 16 LS Contribution 352.65 15.07 5.31 5.31 Total: -1.00 -33.39 352.65 -7.86 -41.24 By element: Atomic # 1 Polarization: 15.42 SS G_CDS: -5.16 Total: 10.25 kcal Atomic # 6 Polarization: -2.39 SS G_CDS: -3.45 Total: -5.85 kcal Atomic # 7 Polarization: -59.88 SS G_CDS: 0.08 Total: -59.81 kcal Atomic # 8 Polarization: -8.40 SS G_CDS: 0.09 Total: -8.31 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.71 Total: 17.16 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -33.39 -7.86 -41.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091331027.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.202 kcal (2) G-P(sol) polarization free energy of solvation -33.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.243 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds