Wall clock time and date at job start Tue Mar 31 2020 03:55:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39993 * 120.46435 * 54.77891 * 3 2 1 5 5 C 1.38215 * 118.36877 * 179.74721 * 4 3 2 6 6 C 1.39492 * 119.20822 * 0.53665 * 5 4 3 7 7 C 1.47984 * 119.57266 * 179.72912 * 6 5 4 8 8 O 1.21543 * 119.99952 * 359.72339 * 7 6 5 9 9 N 1.34777 * 120.00073 * 179.44698 * 7 6 5 10 10 C 1.46504 * 119.99858 * 180.27101 * 9 7 6 11 11 C 1.53004 * 109.46929 * 180.02562 * 10 9 7 12 12 C 1.53783 * 113.61084 * 274.13722 * 11 10 9 13 13 C 1.53950 * 87.01794 * 220.04833 * 12 11 10 14 14 N 1.46501 * 113.53839 * 270.80938 * 13 12 11 15 15 C 1.36938 * 120.00379 * 252.49538 * 14 13 12 16 16 H 1.07998 * 119.99822 * 359.97438 * 15 14 13 17 17 C 1.38815 * 119.99826 * 180.02562 * 15 14 13 18 18 N 1.31623 * 119.99563 * 180.02562 * 17 15 14 19 19 Si 1.86793 * 120.00210 * 0.02562 * 17 15 14 20 20 H 1.48495 * 109.47376 * 89.99853 * 19 17 15 21 21 H 1.48501 * 109.47321 * 210.00142 * 19 17 15 22 22 H 1.48500 * 109.47211 * 329.99665 * 19 17 15 23 23 C 1.53775 * 113.61235 * 176.53237 * 11 10 9 24 24 N 1.32834 * 120.85570 * 359.44508 * 6 5 4 25 25 C 1.31297 * 121.78879 * 0.28022 * 24 6 5 26 26 H 4.52944 * 13.94851 * 0.02562 * 4 2 1 27 27 H 1.08001 * 120.81080 * 0.02562 * 4 3 2 28 28 H 1.07996 * 120.39810 * 180.25531 * 5 4 3 29 29 H 0.97001 * 119.99727 * 0.28000 * 9 7 6 30 30 H 1.08992 * 109.47142 * 300.00148 * 10 9 7 31 31 H 1.08997 * 109.46860 * 60.00391 * 10 9 7 32 32 H 1.09003 * 112.84815 * 45.33070 * 11 10 9 33 33 H 1.09004 * 113.61586 * 334.57205 * 12 11 10 34 34 H 1.09001 * 113.61101 * 105.46879 * 12 11 10 35 35 H 1.08999 * 113.74307 * 139.94491 * 13 12 11 36 36 H 0.97000 * 119.99712 * 72.49981 * 14 13 12 37 37 H 0.96993 * 119.99590 * 179.97438 * 18 17 15 38 38 H 1.08998 * 113.61281 * 254.52332 * 23 11 10 39 39 H 1.08995 * 113.61463 * 25.43342 * 23 11 10 40 40 H 1.07994 * 119.64578 * 180.02562 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3161 -0.6950 -0.9858 5 6 4.6973 -0.6608 -0.9476 6 6 5.3327 0.0505 0.0703 7 6 6.8112 0.0874 0.1224 8 8 7.4638 -0.5038 -0.7154 9 7 7.4341 0.7812 1.0956 10 6 8.8978 0.8226 1.1436 11 6 9.3451 1.6704 2.3362 12 6 9.4222 3.1751 2.0278 13 6 10.7111 3.1996 2.8693 14 7 10.4757 3.4529 4.2929 15 6 10.8138 4.6627 4.8383 16 1 11.2545 5.4299 4.2190 17 6 10.5912 4.9024 6.1873 18 7 10.9157 6.0654 6.7113 19 14 9.8310 3.5746 7.2589 20 1 10.9065 2.7321 7.8408 21 1 9.0514 4.2075 8.3530 22 1 8.9307 2.7287 6.4349 23 6 10.8705 1.7089 2.5269 24 7 4.6280 0.6997 0.9902 25 6 3.3150 0.6963 0.9855 26 1 -1.0500 0.0000 -0.0009 27 1 2.7973 -1.2411 -1.7597 28 1 5.2777 -1.1824 -1.6942 29 1 6.9133 1.2530 1.7642 30 1 9.2865 -0.1898 1.2519 31 1 9.2792 1.2617 0.2218 32 1 8.7964 1.4394 3.2493 33 1 9.5849 3.3969 0.9731 34 1 8.6054 3.7520 2.4616 35 1 11.4961 3.8299 2.4515 36 1 10.0803 2.7637 4.8493 37 1 10.7598 6.2330 7.6539 38 1 11.2213 1.1040 3.3631 39 1 11.4299 1.5292 1.6090 40 1 2.7766 1.2365 1.7501 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001091331027.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:55:39 Heat of formation + Delta-G solvation = 66.360427 kcal Electronic energy + Delta-G solvation = -22244.731029 eV Core-core repulsion = 18833.142241 eV Total energy + Delta-G solvation = -3411.588789 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 299.137 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.76845 -40.53066 -39.70906 -36.15721 -35.44683 -34.94063 -33.33534 -32.68952 -31.78360 -29.03489 -26.46362 -26.21455 -25.17475 -24.70097 -23.16661 -21.99348 -20.29178 -20.13172 -19.58195 -19.06262 -17.98950 -16.92931 -16.63264 -16.58061 -16.55343 -16.12648 -16.07793 -15.36463 -15.25430 -14.91275 -14.70094 -14.58727 -14.29610 -14.04275 -13.57934 -13.37384 -13.10611 -13.02175 -12.71738 -12.62644 -12.19208 -11.94664 -11.88868 -11.69716 -11.60400 -11.32251 -10.98284 -10.95795 -10.86777 -10.62885 -10.20476 -9.84421 -9.29198 -8.02611 -5.35989 -0.79962 0.09051 1.35053 1.37735 1.41298 1.48328 1.68265 2.01111 2.17714 2.48174 2.87572 2.94638 3.24063 3.27643 3.52066 3.63304 3.72319 3.74555 3.86524 3.91466 3.99600 4.12461 4.27481 4.37541 4.61802 4.65929 4.70528 4.77370 4.89880 4.93501 4.97076 5.06702 5.09012 5.22751 5.31910 5.41378 5.45713 5.54731 5.81028 6.23015 6.29216 6.48255 6.64547 7.03775 7.08033 7.85177 8.03530 9.18950 Molecular weight = 299.14amu Principal moments of inertia in cm(-1) A = 0.016855 B = 0.002818 C = 0.002507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.785418 B = 9932.799167 C =11167.384633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.211 4.211 3 C -0.013 4.013 4 C -0.056 4.056 5 C -0.107 4.107 6 C 0.061 3.939 7 C 0.566 3.434 8 O -0.566 6.566 9 N -0.700 5.700 10 C 0.136 3.864 11 C -0.107 4.107 12 C -0.156 4.156 13 C 0.145 3.855 14 N -0.734 5.734 15 C -0.231 4.231 16 H 0.057 0.943 17 C -0.066 4.066 18 N -0.984 5.984 19 Si 0.956 3.044 20 H -0.278 1.278 21 H -0.296 1.296 22 H -0.251 1.251 23 C -0.130 4.130 24 N -0.469 5.469 25 C 0.115 3.885 26 H 0.264 0.736 27 H 0.174 0.826 28 H 0.161 0.839 29 H 0.415 0.585 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.086 0.914 33 H 0.092 0.908 34 H 0.049 0.951 35 H 0.060 0.940 36 H 0.366 0.634 37 H 0.258 0.742 38 H 0.069 0.931 39 H 0.110 0.890 40 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.692 -17.597 -16.908 31.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.211 4.211 3 C -0.016 4.016 4 C -0.082 4.082 5 C -0.128 4.128 6 C -0.076 4.076 7 C 0.351 3.649 8 O -0.445 6.445 9 N -0.350 5.350 10 C 0.013 3.987 11 C -0.126 4.126 12 C -0.197 4.197 13 C 0.036 3.964 14 N -0.376 5.376 15 C -0.362 4.362 16 H 0.075 0.925 17 C -0.257 4.257 18 N -0.635 5.635 19 Si 0.783 3.217 20 H -0.204 1.204 21 H -0.223 1.223 22 H -0.175 1.175 23 C -0.169 4.169 24 N -0.180 5.180 25 C -0.046 4.046 26 H 0.280 0.720 27 H 0.192 0.808 28 H 0.178 0.822 29 H 0.252 0.748 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.104 0.896 33 H 0.110 0.890 34 H 0.068 0.932 35 H 0.078 0.922 36 H 0.200 0.800 37 H 0.067 0.933 38 H 0.087 0.913 39 H 0.128 0.872 40 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -19.572 -17.328 -16.823 31.086 hybrid contribution -0.983 -0.280 0.788 1.291 sum -20.555 -17.608 -16.035 31.459 Atomic orbital electron populations 1.25909 0.96472 0.95089 0.95395 1.19822 0.91874 1.04711 1.04715 1.17327 0.89011 0.98543 0.96696 1.21985 0.92798 0.95877 0.97498 1.22179 0.95276 0.97354 0.98013 1.21191 0.93667 0.98255 0.94466 1.18082 0.86539 0.78933 0.81335 1.90765 1.66723 1.46516 1.40495 1.45930 1.08331 1.50764 1.29995 1.21458 0.78467 1.00412 0.98381 1.22582 0.97487 0.95077 0.97459 1.23751 0.99936 0.95418 1.00555 1.21387 0.95897 0.95965 0.83146 1.42453 1.74925 1.13974 1.06205 1.19073 1.32519 0.91629 0.93008 0.92496 1.25519 1.02692 0.99186 0.98311 1.69886 1.55732 1.24775 1.13078 0.85402 0.78690 0.79056 0.78583 1.20448 1.22327 1.17541 1.23347 0.94661 0.96201 1.02687 1.67531 1.09341 1.17229 1.23885 1.23310 0.88480 0.95685 0.97128 0.72012 0.80819 0.82169 0.74785 0.90865 0.90814 0.89585 0.88996 0.93220 0.92199 0.80013 0.93346 0.91256 0.87181 0.79832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.84 19.25 74.32 1.43 0.59 16 2 C -0.21 -2.71 13.28 30.01 0.40 -2.32 16 3 C -0.01 -0.21 5.75 -21.20 -0.12 -0.33 16 4 C -0.06 -0.77 9.89 22.69 0.22 -0.54 16 5 C -0.11 -1.90 9.61 22.57 0.22 -1.69 16 6 C 0.06 1.38 6.75 41.88 0.28 1.66 16 7 C 0.57 14.87 7.80 86.83 0.68 15.54 16 8 O -0.57 -17.43 16.31 -3.85 -0.06 -17.49 16 9 N -0.70 -17.13 5.54 -465.83 -2.58 -19.71 16 10 C 0.14 3.21 5.50 86.38 0.47 3.69 16 11 C -0.11 -2.81 3.62 -10.27 -0.04 -2.84 16 12 C -0.16 -4.80 7.44 31.18 0.23 -4.57 16 13 C 0.15 5.29 4.57 45.58 0.21 5.50 16 14 N -0.73 -33.64 5.11 -320.17 -1.64 -35.28 16 15 C -0.23 -13.17 10.45 84.03 0.88 -12.29 16 16 H 0.06 3.56 8.06 -2.91 -0.02 3.54 16 17 C -0.07 -3.89 5.50 84.86 0.47 -3.42 16 18 N -0.98 -63.37 13.97 21.65 0.30 -63.07 16 19 Si 0.96 45.37 27.74 68.60 1.90 47.28 16 20 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 21 H -0.30 -14.30 7.11 99.48 0.71 -13.59 16 22 H -0.25 -10.68 6.52 99.48 0.65 -10.03 16 23 C -0.13 -3.53 7.39 31.12 0.23 -3.30 16 24 N -0.47 -10.19 9.51 -183.94 -1.75 -11.94 16 25 C 0.11 1.99 10.92 85.18 0.93 2.92 16 26 H 0.26 -0.39 7.80 -4.42 -0.03 -0.42 16 27 H 0.17 1.29 8.06 -2.91 -0.02 1.27 16 28 H 0.16 2.57 7.63 -2.91 -0.02 2.54 16 29 H 0.42 9.81 7.79 -92.71 -0.72 9.09 16 30 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.07 1.75 7.88 -2.39 -0.02 1.73 16 32 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 33 H 0.09 2.47 7.92 -2.38 -0.02 2.46 16 34 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.06 2.29 8.10 -2.39 -0.02 2.27 16 36 H 0.37 16.05 5.76 -92.71 -0.53 15.51 16 37 H 0.26 15.80 8.31 -92.71 -0.77 15.03 16 38 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 39 H 0.11 2.43 8.10 -2.39 -0.02 2.41 16 40 H 0.18 2.36 8.06 -2.91 -0.02 2.33 16 Total: -1.00 -74.42 352.65 2.42 -72.00 By element: Atomic # 1 Polarization: 29.85 SS G_CDS: -0.25 Total: 29.60 kcal Atomic # 6 Polarization: -7.89 SS G_CDS: 6.49 Total: -1.40 kcal Atomic # 7 Polarization: -124.33 SS G_CDS: -5.67 Total: -129.99 kcal Atomic # 8 Polarization: -17.43 SS G_CDS: -0.06 Total: -17.49 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 1.90 Total: 47.28 kcal Total: -74.42 2.42 -72.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091331027.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.361 kcal (2) G-P(sol) polarization free energy of solvation -74.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.000 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds