Wall clock time and date at job start Tue Mar 31 2020 03:37:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 N 1.28708 * 125.86725 * 2 1 4 4 N 1.28638 * 110.17863 * 180.23903 * 3 2 1 5 5 C 1.33769 * 108.88108 * 359.75841 * 4 3 2 6 6 C 1.35311 * 125.86722 * 179.82451 * 2 1 3 7 7 C 1.50703 * 126.91295 * 0.03595 * 6 2 1 8 8 N 1.46906 * 109.47109 * 274.71002 * 7 6 2 9 9 C 1.46895 * 110.99789 * 179.97438 * 8 7 6 10 10 C 1.53004 * 109.47035 * 179.97438 * 9 8 7 11 11 N 1.46493 * 109.47443 * 179.97438 * 10 9 8 12 12 C 1.34775 * 120.00157 * 180.02562 * 11 10 9 13 13 O 1.21283 * 120.00162 * 359.97438 * 12 11 10 14 14 C 1.50705 * 119.99988 * 180.02562 * 12 11 10 15 15 S 1.80998 * 109.47116 * 179.97438 * 14 12 11 16 16 C 1.76201 * 99.99869 * 179.97438 * 15 14 12 17 17 H 1.07997 * 120.00214 * 0.02562 * 16 15 14 18 18 C 1.38798 * 119.99819 * 179.97438 * 16 15 14 19 19 N 1.31632 * 120.00056 * 179.97438 * 18 16 15 20 20 Si 1.86806 * 119.99990 * 0.02562 * 18 16 15 21 21 H 1.48495 * 109.47088 * 89.99730 * 20 18 16 22 22 H 1.48501 * 109.46920 * 209.99825 * 20 18 16 23 23 H 1.48497 * 109.47019 * 329.99682 * 20 18 16 24 24 H 1.09005 * 109.47096 * 270.17263 * 1 2 3 25 25 H 1.08998 * 109.47305 * 30.17385 * 1 2 3 26 26 H 1.08992 * 109.47318 * 150.17797 * 1 2 3 27 27 H 1.08002 * 126.74936 * 179.97438 * 5 4 3 28 28 H 1.08992 * 109.46894 * 154.70737 * 7 6 2 29 29 H 1.09004 * 109.47113 * 34.70888 * 7 6 2 30 30 H 1.00899 * 110.99484 * 303.95639 * 8 7 6 31 31 H 1.08996 * 109.47424 * 299.99656 * 9 8 7 32 32 H 1.09002 * 109.47411 * 60.00282 * 9 8 7 33 33 H 1.09007 * 109.47219 * 300.00436 * 10 9 8 34 34 H 1.09005 * 109.47157 * 59.99991 * 10 9 8 35 35 H 0.97000 * 119.99938 * 0.02562 * 11 10 9 36 36 H 1.08999 * 109.46902 * 300.00127 * 14 12 11 37 37 H 1.08996 * 109.47102 * 59.99538 * 14 12 11 38 38 H 0.96998 * 119.99954 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2192 1.0430 0.0000 4 7 3.4576 0.6952 -0.0050 5 6 3.5321 -0.6404 -0.0032 6 6 2.2578 -1.0965 0.0034 7 6 1.8117 -2.5360 0.0070 8 7 1.5574 -2.9663 1.3884 9 6 1.1190 -4.3677 1.4309 10 6 0.8652 -4.7789 2.8827 11 7 0.4274 -6.1762 2.9251 12 6 0.1435 -6.7578 4.1073 13 8 0.2509 -6.1246 5.1360 14 6 -0.3063 -8.1955 4.1510 15 16 -0.6067 -8.6818 5.8683 16 6 -1.1057 -10.3548 5.6298 17 1 -1.1474 -10.7690 4.6333 18 6 -1.4443 -11.1405 6.7227 19 7 -1.8176 -12.3901 6.5445 20 14 -1.3716 -10.4242 8.4464 21 1 -2.6849 -9.8209 8.7875 22 1 -1.0548 -11.5022 9.4174 23 1 -0.3172 -9.3801 8.5045 24 1 -0.3633 0.0031 1.0277 25 1 -0.3634 0.8884 -0.5165 26 1 -0.3633 -0.8915 -0.5110 27 1 4.4321 -1.2374 -0.0067 28 1 2.5918 -3.1592 -0.4299 29 1 0.8975 -2.6345 -0.5784 30 1 2.3716 -2.8240 1.9671 31 1 0.1999 -4.4785 0.8556 32 1 1.8941 -5.0041 1.0037 33 1 1.7846 -4.6681 3.4578 34 1 0.0903 -4.1426 3.3103 35 1 0.3419 -6.6828 2.1024 36 1 -1.2253 -8.3063 3.5755 37 1 0.4687 -8.8318 3.7237 38 1 -2.0538 -12.9394 7.3083 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123792185.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:37:54 Heat of formation + Delta-G solvation = 32.558343 kcal Electronic energy + Delta-G solvation = -20331.887846 eV Core-core repulsion = 16950.736897 eV Total energy + Delta-G solvation = -3381.150949 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 299.116 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -44.24388 -40.64320 -37.91562 -35.83163 -35.34380 -34.66161 -32.86567 -31.30012 -29.13886 -28.62025 -27.82868 -25.83539 -23.55650 -23.15094 -21.88885 -21.66046 -19.89026 -18.34251 -17.87650 -17.63197 -17.30594 -17.10850 -17.00675 -16.43125 -15.85307 -15.73850 -15.36497 -15.13450 -14.85949 -14.66943 -14.44968 -14.11702 -13.83469 -13.65445 -13.37451 -13.31900 -13.01340 -12.76419 -12.67561 -12.45819 -12.39645 -11.86682 -11.82942 -11.16407 -11.07085 -11.02540 -10.51864 -10.27923 -10.13535 -9.50520 -8.98583 -8.50834 -6.21365 0.55352 1.00443 1.31998 1.47223 1.51114 1.55626 1.57638 1.58166 2.19280 2.26071 2.72059 2.87512 3.25031 3.45385 3.70853 3.85066 3.93866 4.01258 4.13607 4.16538 4.27368 4.30326 4.49744 4.52296 4.55877 4.57713 4.69300 4.92130 4.95324 4.98090 5.21050 5.39554 5.62590 5.71579 5.85939 6.12473 6.23961 6.48861 6.94678 7.22044 7.48494 8.61298 Molecular weight = 299.12amu Principal moments of inertia in cm(-1) A = 0.047339 B = 0.001965 C = 0.001948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 591.341568 B =14246.974367 C =14368.104507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.274 5.274 3 N -0.126 5.126 4 N -0.314 5.314 5 C -0.056 4.056 6 C -0.007 4.007 7 C 0.139 3.861 8 N -0.694 5.694 9 C 0.064 3.936 10 C 0.123 3.877 11 N -0.709 5.709 12 C 0.535 3.465 13 O -0.565 6.565 14 C -0.111 4.111 15 S -0.181 6.181 16 C -0.527 4.527 17 H 0.064 0.936 18 C 0.045 3.955 19 N -0.916 5.916 20 Si 0.914 3.086 21 H -0.263 1.263 22 H -0.260 1.260 23 H -0.237 1.237 24 H 0.100 0.900 25 H 0.108 0.892 26 H 0.125 0.875 27 H 0.211 0.789 28 H 0.086 0.914 29 H 0.107 0.893 30 H 0.349 0.651 31 H 0.098 0.902 32 H 0.061 0.939 33 H 0.055 0.945 34 H 0.059 0.941 35 H 0.419 0.581 36 H 0.116 0.884 37 H 0.116 0.884 38 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.772 20.139 -19.226 28.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.069 5.069 3 N -0.105 5.105 4 N -0.178 5.178 5 C -0.216 4.216 6 C -0.142 4.142 7 C 0.009 3.991 8 N -0.327 5.327 9 C -0.065 4.065 10 C -0.002 4.002 11 N -0.364 5.364 12 C 0.320 3.680 13 O -0.444 6.444 14 C -0.261 4.261 15 S 0.046 5.954 16 C -0.675 4.675 17 H 0.082 0.918 18 C -0.161 4.161 19 N -0.554 5.554 20 Si 0.736 3.264 21 H -0.188 1.188 22 H -0.185 1.185 23 H -0.161 1.161 24 H 0.118 0.882 25 H 0.126 0.874 26 H 0.143 0.857 27 H 0.228 0.772 28 H 0.104 0.896 29 H 0.125 0.875 30 H 0.168 0.832 31 H 0.117 0.883 32 H 0.079 0.921 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.257 0.743 36 H 0.134 0.866 37 H 0.134 0.866 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 5.251 22.871 -17.484 29.263 hybrid contribution 0.380 -2.661 -0.757 2.793 sum 5.632 20.209 -18.241 27.800 Atomic orbital electron populations 1.22634 0.70468 1.07351 1.06323 1.47545 1.10717 1.04067 1.44524 1.78268 0.96988 1.13274 1.21985 1.75047 1.10318 1.14431 1.17983 1.23962 0.98821 0.91377 1.07404 1.22438 0.90622 0.92536 1.08583 1.20404 1.02962 0.85272 0.90503 1.60288 1.41672 1.20664 1.10111 1.21973 1.02364 0.88056 0.94111 1.21225 0.99837 0.80847 0.98252 1.45551 1.68804 1.13705 1.08297 1.19953 0.76413 0.87766 0.83884 1.90706 1.53247 1.65482 1.34924 1.23270 1.06334 0.96134 1.00410 1.84774 1.88626 1.12877 1.09153 1.22459 1.51719 0.96209 0.97099 0.91756 1.25559 0.93078 0.94497 1.02919 1.70013 1.44375 1.07825 1.33213 0.85875 0.80889 0.79897 0.79768 1.18754 1.18465 1.16113 0.88201 0.87379 0.85671 0.77179 0.89586 0.87472 0.83215 0.88347 0.92078 0.92649 0.92256 0.74340 0.86609 0.86616 0.91407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.38 11.22 127.77 1.43 1.81 16 2 N -0.27 -3.83 3.74 -355.72 -1.33 -5.16 16 3 N -0.13 -2.76 13.16 37.02 0.49 -2.28 16 4 N -0.31 -7.23 12.41 -58.26 -0.72 -7.96 16 5 C -0.06 -0.84 11.99 83.73 1.00 0.17 16 6 C -0.01 -0.08 6.51 41.36 0.27 0.19 16 7 C 0.14 0.59 5.91 85.56 0.51 1.10 16 8 N -0.69 -4.99 6.49 -517.92 -3.36 -8.35 16 9 C 0.06 0.42 5.80 86.31 0.50 0.92 16 10 C 0.12 1.94 5.93 86.38 0.51 2.46 16 11 N -0.71 -13.42 5.56 -463.05 -2.57 -15.99 16 12 C 0.53 16.81 7.85 87.66 0.69 17.50 16 13 O -0.57 -23.17 15.86 -3.04 -0.05 -23.22 16 14 C -0.11 -3.86 6.16 71.24 0.44 -3.42 16 15 S -0.18 -8.89 18.55 -56.49 -1.05 -9.94 16 16 C -0.53 -30.00 10.04 67.95 0.68 -29.32 16 17 H 0.06 3.84 8.03 -2.91 -0.02 3.81 16 18 C 0.04 2.59 5.50 84.86 0.47 3.06 16 19 N -0.92 -54.98 13.97 21.65 0.30 -54.68 16 20 Si 0.91 44.44 27.74 68.60 1.90 46.35 16 21 H -0.26 -12.49 7.11 99.48 0.71 -11.78 16 22 H -0.26 -11.91 7.11 99.48 0.71 -11.20 16 23 H -0.24 -11.53 6.74 99.48 0.67 -10.86 16 24 H 0.10 0.50 8.14 -2.38 -0.02 0.49 16 25 H 0.11 0.39 8.14 -2.39 -0.02 0.37 16 26 H 0.12 -0.03 7.22 -2.39 -0.02 -0.05 16 27 H 0.21 1.75 8.06 -2.91 -0.02 1.73 16 28 H 0.09 0.09 8.14 -2.39 -0.02 0.07 16 29 H 0.11 0.11 7.31 -2.38 -0.02 0.09 16 30 H 0.35 2.93 8.72 -89.69 -0.78 2.15 16 31 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 32 H 0.06 0.24 8.14 -2.39 -0.02 0.22 16 33 H 0.06 1.03 8.14 -2.38 -0.02 1.02 16 34 H 0.06 1.19 8.14 -2.38 -0.02 1.17 16 35 H 0.42 4.79 8.47 -92.71 -0.79 4.01 16 36 H 0.12 3.64 8.14 -2.40 -0.02 3.62 16 37 H 0.12 3.65 8.14 -2.40 -0.02 3.63 16 38 H 0.28 15.36 8.31 -92.71 -0.77 14.59 16 Total: -1.00 -82.93 344.73 -0.40 -83.33 By element: Atomic # 1 Polarization: 3.95 SS G_CDS: -0.51 Total: 3.44 kcal Atomic # 6 Polarization: -12.05 SS G_CDS: 6.50 Total: -5.55 kcal Atomic # 7 Polarization: -87.22 SS G_CDS: -7.20 Total: -94.42 kcal Atomic # 8 Polarization: -23.17 SS G_CDS: -0.05 Total: -23.22 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 1.90 Total: 46.35 kcal Atomic # 16 Polarization: -8.89 SS G_CDS: -1.05 Total: -9.94 kcal Total: -82.93 -0.40 -83.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123792185.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.886 kcal (2) G-P(sol) polarization free energy of solvation -82.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.328 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds