Wall clock time and date at job start Tue Mar 31 2020 03:56:33
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31620 * 1
3 3 Si 1.86803 * 119.99513 * 2 1
4 4 H 1.48503 * 109.46741 * 179.97438 * 3 2 1
5 5 H 1.48498 * 109.47416 * 299.99811 * 3 2 1
6 6 H 1.48502 * 109.47079 * 60.00263 * 3 2 1
7 7 C 1.38812 * 120.00176 * 179.97438 * 2 1 3
8 8 H 1.07998 * 120.00073 * 180.02562 * 7 2 1
9 9 N 1.36936 * 120.00058 * 0.02562 * 7 2 1
10 10 C 1.46496 * 120.00055 * 179.97438 * 9 7 2
11 11 C 1.52996 * 109.47243 * 179.97438 * 10 9 7
12 12 N 1.46505 * 109.47111 * 179.97438 * 11 10 9
13 13 C 1.34780 * 119.99588 * 180.02562 * 12 11 10
14 14 O 1.21281 * 120.00434 * 359.97438 * 13 12 11
15 15 C 1.50703 * 119.99575 * 180.02562 * 13 12 11
16 16 C 1.52996 * 109.47094 * 180.02562 * 15 13 12
17 17 C 1.53000 * 109.47210 * 179.97438 * 16 15 13
18 18 N 1.46506 * 109.46992 * 179.97438 * 17 16 15
19 19 C 1.36370 * 125.96582 * 269.68933 * 18 17 16
20 20 O 1.35627 * 125.98599 * 0.03646 * 19 18 17
21 21 N 1.30902 * 108.02387 * 179.89190 * 19 18 17
22 22 N 1.40109 * 107.94108 * 0.36863 * 21 19 18
23 23 C 1.30908 * 107.94040 * 359.76947 * 22 21 19
24 24 O 1.35631 * 125.98942 * 179.97438 * 23 22 21
25 25 H 0.97001 * 120.00314 * 0.02562 * 1 2 3
26 26 H 0.97000 * 119.99973 * 359.97438 * 9 7 2
27 27 H 1.09005 * 109.47239 * 60.00131 * 10 9 7
28 28 H 1.08991 * 109.47167 * 299.99905 * 10 9 7
29 29 H 1.09008 * 109.47046 * 60.00138 * 11 10 9
30 30 H 1.09003 * 109.47659 * 299.99960 * 11 10 9
31 31 H 0.96992 * 119.99723 * 0.02562 * 12 11 10
32 32 H 1.08997 * 109.47561 * 59.99923 * 15 13 12
33 33 H 1.09000 * 109.46976 * 299.99617 * 15 13 12
34 34 H 1.09000 * 109.47531 * 59.99538 * 16 15 13
35 35 H 1.09008 * 109.47250 * 300.00113 * 16 15 13
36 36 H 1.09000 * 109.46884 * 60.00289 * 17 16 15
37 37 H 1.09000 * 109.46955 * 299.99604 * 17 16 15
38 38 H 0.96698 * 114.00049 * 90.00044 * 20 19 18
39 39 H 0.96700 * 113.99434 * 270.02085 * 24 23 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2501 1.6178 0.0000
4 1 3.7101 1.3465 0.0006
5 1 1.8914 2.3965 -1.2125
6 1 1.8913 2.3965 1.2125
7 6 2.0103 -1.2021 0.0005
8 1 3.0903 -1.2021 0.0010
9 7 1.3257 -2.3880 0.0005
10 6 2.0582 -3.6567 0.0005
11 6 1.0640 -4.8197 0.0012
12 7 1.7966 -6.0884 0.0006
13 6 1.1227 -7.2556 0.0005
14 8 -0.0901 -7.2557 0.0013
15 6 1.8763 -8.5607 0.0004
16 6 0.8821 -9.7236 -0.0004
17 6 1.6472 -11.0486 -0.0011
18 7 0.6952 -12.1622 -0.0012
19 6 0.1796 -12.7752 1.1025
20 8 0.4578 -12.4604 2.3920
21 7 -0.6332 -13.7187 0.6991
22 7 -0.6341 -13.7179 -0.7020
23 6 0.1745 -12.7706 -1.1051
24 8 0.4470 -12.4505 -2.3946
25 1 -0.4850 0.8400 -0.0004
26 1 0.3557 -2.3881 0.0005
27 1 2.6849 -3.7145 0.8906
28 1 2.6848 -3.7144 -0.8894
29 1 0.4370 -4.7621 -0.8887
30 1 0.4377 -4.7618 0.8914
31 1 2.7665 -6.0883 0.0002
32 1 2.5029 -8.6185 0.8904
33 1 2.5029 -8.6183 -0.8896
34 1 0.2558 -9.6657 -0.8905
35 1 0.2550 -9.6662 0.8894
36 1 2.2737 -11.1068 0.8890
37 1 2.2739 -11.1058 -0.8911
38 1 -0.1332 -11.7954 2.7708
39 1 1.1977 -12.9316 -2.7690
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001130556509.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:56:33
Heat of formation + Delta-G solvation = -18.616259 kcal
Electronic energy + Delta-G solvation = -22943.692616 eV
Core-core repulsion = 19117.569698 eV
Total energy + Delta-G solvation = -3826.122918 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 299.143 amu
Computer time = 0.42 seconds
Orbital eigenvalues (eV)
-42.68651 -39.80555 -38.61936 -37.53132 -36.32049 -35.66526 -33.93430 -32.83810
-31.27642 -29.99803 -28.55340 -26.95275 -23.94357 -23.20443 -22.91543 -22.12983
-21.54146 -20.37587 -19.29188 -19.12211 -17.57640 -17.23726 -17.11580 -16.57820
-16.26253 -15.86313 -15.54872 -15.03536 -14.65697 -14.51270 -13.91419 -13.80871
-13.43881 -13.27844 -13.11846 -12.90893 -12.76887 -12.68183 -12.32715 -11.69176
-11.54900 -11.42811 -11.18840 -10.93306 -10.88789 -10.87998 -10.46728 -10.15584
-9.99977 -9.86410 -9.78386 -9.08484 -8.92992 -7.06172 -5.85620 -3.16837
1.08591 1.28913 1.81089 2.55470 2.79440 3.04511 3.37145 3.37666
3.43128 3.45544 3.90471 4.20073 4.36257 4.52915 4.58406 4.69571
4.76677 4.82757 4.89339 5.08424 5.18173 5.43317 5.44089 5.49563
5.65420 5.68751 5.69704 5.87380 6.05952 6.37504 6.56777 6.61147
6.63634 6.86290 7.46756 7.46903 7.60275 8.16915 8.31776 9.43143
9.97388 10.31814 11.36899
Molecular weight = 299.14amu
Principal moments of inertia in cm(-1)
A = 0.040320 B = 0.001929 C = 0.001910
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 694.271048 B =14509.374145 C =14654.741922
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.930 5.930
2 C -0.012 4.012
3 Si 0.911 3.089
4 H -0.280 1.280
5 H -0.290 1.290
6 H -0.290 1.290
7 C -0.245 4.245
8 H 0.072 0.928
9 N -0.730 5.730
10 C 0.145 3.855
11 C 0.110 3.890
12 N -0.723 5.723
13 C 0.508 3.492
14 O -0.541 6.541
15 C -0.136 4.136
16 C -0.120 4.120
17 C 0.100 3.900
18 N -0.510 5.510
19 C 0.408 3.592
20 O -0.437 6.437
21 N -0.297 5.297
22 N -0.297 5.297
23 C 0.407 3.593
24 O -0.433 6.433
25 H 0.257 0.743
26 H 0.386 0.614
27 H 0.024 0.976
28 H 0.024 0.976
29 H 0.069 0.931
30 H 0.069 0.931
31 H 0.400 0.600
32 H 0.098 0.902
33 H 0.098 0.902
34 H 0.083 0.917
35 H 0.076 0.924
36 H 0.103 0.897
37 H 0.099 0.901
38 H 0.415 0.585
39 H 0.411 0.589
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.062 -26.182 -0.003 27.395
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.578 5.578
2 C -0.209 4.209
3 Si 0.741 3.259
4 H -0.205 1.205
5 H -0.217 1.217
6 H -0.217 1.217
7 C -0.376 4.376
8 H 0.090 0.910
9 N -0.375 5.375
10 C 0.017 3.983
11 C -0.014 4.014
12 N -0.374 5.374
13 C 0.294 3.706
14 O -0.419 6.419
15 C -0.177 4.177
16 C -0.159 4.159
17 C -0.023 4.023
18 N -0.230 5.230
19 C 0.097 3.903
20 O -0.237 6.237
21 N -0.141 5.141
22 N -0.142 5.142
23 C 0.097 3.903
24 O -0.233 6.233
25 H 0.067 0.933
26 H 0.220 0.780
27 H 0.042 0.958
28 H 0.042 0.958
29 H 0.087 0.913
30 H 0.087 0.913
31 H 0.234 0.766
32 H 0.116 0.884
33 H 0.116 0.884
34 H 0.102 0.898
35 H 0.095 0.905
36 H 0.121 0.879
37 H 0.117 0.883
38 H 0.274 0.726
39 H 0.269 0.731
Dipole moment (debyes) X Y Z Total
from point charges 6.279 -27.242 -0.004 27.956
hybrid contribution 1.738 2.360 -0.012 2.931
sum 8.017 -24.882 -0.016 26.141
Atomic orbital electron populations
1.69676 1.05168 1.25818 1.57112 1.24800 0.95587 0.97895 1.02587
0.86071 0.78700 0.83810 0.77277 1.20498 1.21728 1.21736 1.19228
0.91060 0.83821 1.43520 0.90956 1.42200 1.06020 0.99582 1.89708
1.20749 0.93463 0.85714 0.98392 1.21601 0.95482 0.81718 1.02600
1.45952 1.10469 1.06101 1.74867 1.20463 0.88252 0.85397 0.76529
1.90744 1.14028 1.87678 1.49410 1.21538 0.99062 0.92168 1.04960
1.21675 0.98139 0.90894 1.05170 1.22034 0.90609 0.84168 1.05480
1.47147 1.39075 1.30409 1.06373 1.21337 0.94469 0.92727 0.81719
1.84919 1.58667 1.63598 1.16556 1.78381 1.16577 1.18219 1.00928
1.78381 1.18908 1.15966 1.00922 1.21336 0.95037 0.92201 0.81684
1.85005 1.55023 1.66699 1.16566 0.93348 0.77999 0.95833 0.95819
0.91264 0.91269 0.76601 0.88372 0.88356 0.89829 0.90516 0.87914
0.88297 0.72630 0.73063
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -27.90 13.06 55.49 0.72 -27.18 16
2 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16
3 Si 0.91 21.94 29.55 -169.99 -5.02 16.92 16
4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16
5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16
6 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16
7 C -0.25 -6.72 9.99 -15.06 -0.15 -6.87 16
8 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16
9 N -0.73 -18.11 5.60 -59.92 -0.34 -18.44 16
10 C 0.15 2.70 6.37 -4.05 -0.03 2.67 16
11 C 0.11 1.76 5.79 -4.04 -0.02 1.74 16
12 N -0.72 -8.40 5.56 -60.29 -0.33 -8.74 16
13 C 0.51 5.89 7.83 -10.98 -0.09 5.81 16
14 O -0.54 -8.90 15.98 5.56 0.09 -8.81 16
15 C -0.14 -0.79 5.70 -27.88 -0.16 -0.95 16
16 C -0.12 -0.78 4.83 -26.73 -0.13 -0.91 16
17 C 0.10 0.42 6.01 -4.04 -0.02 0.39 16
18 N -0.51 -3.74 2.76 -120.05 -0.33 -4.07 16
19 C 0.41 3.62 9.15 -88.82 -0.81 2.81 16
20 O -0.44 -2.66 13.57 -18.58 -0.25 -2.91 16
21 N -0.30 -3.60 12.72 29.65 0.38 -3.22 16
22 N -0.30 -3.60 12.72 29.66 0.38 -3.23 16
23 C 0.41 3.61 9.15 -88.81 -0.81 2.80 16
24 O -0.43 -2.62 13.58 -18.59 -0.25 -2.87 16
25 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16
26 H 0.39 10.19 7.67 -40.82 -0.31 9.88 16
27 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16
28 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16
29 H 0.07 1.22 8.14 -51.92 -0.42 0.80 16
30 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16
31 H 0.40 3.36 8.47 -40.82 -0.35 3.01 16
32 H 0.10 0.34 8.14 -51.93 -0.42 -0.09 16
33 H 0.10 0.36 8.14 -51.93 -0.42 -0.07 16
34 H 0.08 0.76 8.10 -51.93 -0.42 0.34 16
35 H 0.08 0.59 8.10 -51.92 -0.42 0.17 16
36 H 0.10 0.27 8.14 -51.93 -0.42 -0.15 16
37 H 0.10 0.21 8.14 -51.93 -0.42 -0.22 16
38 H 0.41 0.67 9.06 45.56 0.41 1.09 16
39 H 0.41 0.11 9.06 45.56 0.41 0.52 16
LS Contribution 348.49 15.07 5.25 5.25
Total: -1.00 -39.32 348.49 -5.63 -44.95
By element:
Atomic # 1 Polarization: 8.91 SS G_CDS: -3.60 Total: 5.31 kcal
Atomic # 6 Polarization: 9.36 SS G_CDS: -2.32 Total: 7.04 kcal
Atomic # 7 Polarization: -65.35 SS G_CDS: 0.48 Total: -64.87 kcal
Atomic # 8 Polarization: -14.18 SS G_CDS: -0.42 Total: -14.59 kcal
Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal
Total LS contribution 5.25 Total: 5.25 kcal
Total: -39.32 -5.63 -44.95 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001130556509.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 26.331 kcal
(2) G-P(sol) polarization free energy of solvation -39.315 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.984 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.632 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.948 kcal
(6) G-S(sol) free energy of system = (1) + (5) -18.616 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.42 seconds