Wall clock time and date at job start Tue Mar 31 2020 03:56:32
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31620 * 1
3 3 Si 1.86803 * 119.99513 * 2 1
4 4 H 1.48503 * 109.46741 * 179.97438 * 3 2 1
5 5 H 1.48498 * 109.47416 * 299.99811 * 3 2 1
6 6 H 1.48502 * 109.47079 * 60.00263 * 3 2 1
7 7 C 1.38812 * 120.00176 * 179.97438 * 2 1 3
8 8 H 1.07998 * 120.00073 * 180.02562 * 7 2 1
9 9 N 1.36936 * 120.00058 * 0.02562 * 7 2 1
10 10 C 1.46496 * 120.00055 * 179.97438 * 9 7 2
11 11 C 1.52996 * 109.47243 * 179.97438 * 10 9 7
12 12 N 1.46505 * 109.47111 * 179.97438 * 11 10 9
13 13 C 1.34780 * 119.99588 * 180.02562 * 12 11 10
14 14 O 1.21281 * 120.00434 * 359.97438 * 13 12 11
15 15 C 1.50703 * 119.99575 * 180.02562 * 13 12 11
16 16 C 1.52996 * 109.47094 * 180.02562 * 15 13 12
17 17 C 1.53000 * 109.47210 * 179.97438 * 16 15 13
18 18 N 1.46506 * 109.46992 * 179.97438 * 17 16 15
19 19 C 1.36370 * 125.96582 * 269.68933 * 18 17 16
20 20 O 1.35627 * 125.98599 * 0.03646 * 19 18 17
21 21 N 1.30902 * 108.02387 * 179.89190 * 19 18 17
22 22 N 1.40109 * 107.94108 * 0.36863 * 21 19 18
23 23 C 1.30908 * 107.94040 * 359.76947 * 22 21 19
24 24 O 1.35631 * 125.98942 * 179.97438 * 23 22 21
25 25 H 0.97001 * 120.00314 * 0.02562 * 1 2 3
26 26 H 0.97000 * 119.99973 * 359.97438 * 9 7 2
27 27 H 1.09005 * 109.47239 * 60.00131 * 10 9 7
28 28 H 1.08991 * 109.47167 * 299.99905 * 10 9 7
29 29 H 1.09008 * 109.47046 * 60.00138 * 11 10 9
30 30 H 1.09003 * 109.47659 * 299.99960 * 11 10 9
31 31 H 0.96992 * 119.99723 * 0.02562 * 12 11 10
32 32 H 1.08997 * 109.47561 * 59.99923 * 15 13 12
33 33 H 1.09000 * 109.46976 * 299.99617 * 15 13 12
34 34 H 1.09000 * 109.47531 * 59.99538 * 16 15 13
35 35 H 1.09008 * 109.47250 * 300.00113 * 16 15 13
36 36 H 1.09000 * 109.46884 * 60.00289 * 17 16 15
37 37 H 1.09000 * 109.46955 * 299.99604 * 17 16 15
38 38 H 0.96698 * 114.00049 * 90.00044 * 20 19 18
39 39 H 0.96700 * 113.99434 * 270.02085 * 24 23 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2501 1.6178 0.0000
4 1 3.7101 1.3465 0.0006
5 1 1.8914 2.3965 -1.2125
6 1 1.8913 2.3965 1.2125
7 6 2.0103 -1.2021 0.0005
8 1 3.0903 -1.2021 0.0010
9 7 1.3257 -2.3880 0.0005
10 6 2.0582 -3.6567 0.0005
11 6 1.0640 -4.8197 0.0012
12 7 1.7966 -6.0884 0.0006
13 6 1.1227 -7.2556 0.0005
14 8 -0.0901 -7.2557 0.0013
15 6 1.8763 -8.5607 0.0004
16 6 0.8821 -9.7236 -0.0004
17 6 1.6472 -11.0486 -0.0011
18 7 0.6952 -12.1622 -0.0012
19 6 0.1796 -12.7752 1.1025
20 8 0.4578 -12.4604 2.3920
21 7 -0.6332 -13.7187 0.6991
22 7 -0.6341 -13.7179 -0.7020
23 6 0.1745 -12.7706 -1.1051
24 8 0.4470 -12.4505 -2.3946
25 1 -0.4850 0.8400 -0.0004
26 1 0.3557 -2.3881 0.0005
27 1 2.6849 -3.7145 0.8906
28 1 2.6848 -3.7144 -0.8894
29 1 0.4370 -4.7621 -0.8887
30 1 0.4377 -4.7618 0.8914
31 1 2.7665 -6.0883 0.0002
32 1 2.5029 -8.6185 0.8904
33 1 2.5029 -8.6183 -0.8896
34 1 0.2558 -9.6657 -0.8905
35 1 0.2550 -9.6662 0.8894
36 1 2.2737 -11.1068 0.8890
37 1 2.2739 -11.1058 -0.8911
38 1 -0.1332 -11.7954 2.7708
39 1 1.1977 -12.9316 -2.7690
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001130556509.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:56:32
Heat of formation + Delta-G solvation = -57.827855 kcal
Electronic energy + Delta-G solvation = -22945.392958 eV
Core-core repulsion = 19117.569698 eV
Total energy + Delta-G solvation = -3827.823260 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 299.143 amu
Computer time = 0.45 seconds
Orbital eigenvalues (eV)
-43.29878 -40.78545 -39.11731 -38.03663 -37.42927 -36.62056 -35.48262 -33.57453
-33.01559 -30.67611 -29.84138 -27.89350 -25.58447 -23.84998 -23.79736 -23.02415
-22.63639 -21.28188 -19.81388 -19.65334 -19.32683 -18.21751 -17.70654 -17.29080
-17.02837 -16.82298 -16.47389 -16.34828 -16.02862 -15.31375 -15.06520 -15.00896
-14.85420 -14.47585 -13.95187 -13.58625 -13.35121 -13.29416 -13.05330 -12.97148
-12.90056 -12.68039 -12.50766 -12.32888 -12.05303 -11.94108 -11.86654 -11.49888
-11.11883 -11.01715 -10.90917 -10.55110 -10.13121 -9.07985 -7.98462 -5.29913
0.52281 0.75223 1.15788 1.48055 1.49318 1.59429 1.66051 2.13102
2.23273 2.57043 2.92040 3.36174 3.52276 3.61213 3.88980 4.01251
4.06445 4.11751 4.19372 4.20973 4.32191 4.40429 4.46187 4.58744
4.69520 4.71654 5.03912 5.04545 5.13242 5.16882 5.35324 5.40777
5.49029 6.22603 6.24821 6.47492 6.58540 6.81533 7.28465 7.29264
8.01060 8.22971 9.25422
Molecular weight = 299.14amu
Principal moments of inertia in cm(-1)
A = 0.040320 B = 0.001929 C = 0.001910
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 694.271048 B =14509.374145 C =14654.741922
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.972 5.972
2 C -0.080 4.080
3 Si 0.980 3.020
4 H -0.260 1.260
5 H -0.294 1.294
6 H -0.294 1.294
7 C -0.246 4.246
8 H 0.085 0.915
9 N -0.749 5.749
10 C 0.149 3.851
11 C 0.126 3.874
12 N -0.711 5.711
13 C 0.502 3.498
14 O -0.598 6.598
15 C -0.121 4.121
16 C -0.116 4.116
17 C 0.103 3.897
18 N -0.505 5.505
19 C 0.417 3.583
20 O -0.434 6.434
21 N -0.345 5.345
22 N -0.347 5.347
23 C 0.418 3.582
24 O -0.435 6.435
25 H 0.252 0.748
26 H 0.373 0.627
27 H 0.039 0.961
28 H 0.039 0.961
29 H 0.048 0.952
30 H 0.049 0.951
31 H 0.420 0.580
32 H 0.136 0.864
33 H 0.133 0.867
34 H 0.052 0.948
35 H 0.059 0.941
36 H 0.129 0.871
37 H 0.129 0.871
38 H 0.433 0.567
39 H 0.436 0.564
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 11.570 -26.676 0.027 29.077
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.622 5.622
2 C -0.272 4.272
3 Si 0.808 3.192
4 H -0.184 1.184
5 H -0.222 1.222
6 H -0.221 1.221
7 C -0.377 4.377
8 H 0.103 0.897
9 N -0.393 5.393
10 C 0.022 3.978
11 C 0.001 3.999
12 N -0.364 5.364
13 C 0.290 3.710
14 O -0.478 6.478
15 C -0.161 4.161
16 C -0.155 4.155
17 C -0.018 4.018
18 N -0.224 5.224
19 C 0.105 3.895
20 O -0.238 6.238
21 N -0.190 5.190
22 N -0.191 5.191
23 C 0.107 3.893
24 O -0.239 6.239
25 H 0.061 0.939
26 H 0.204 0.796
27 H 0.057 0.943
28 H 0.057 0.943
29 H 0.066 0.934
30 H 0.068 0.932
31 H 0.258 0.742
32 H 0.154 0.846
33 H 0.151 0.849
34 H 0.071 0.929
35 H 0.078 0.922
36 H 0.147 0.853
37 H 0.148 0.852
38 H 0.296 0.704
39 H 0.299 0.701
Dipole moment (debyes) X Y Z Total
from point charges 9.893 -27.772 0.023 29.482
hybrid contribution 0.694 2.480 -0.031 2.576
sum 10.587 -25.292 -0.008 27.419
Atomic orbital electron populations
1.69844 1.06883 1.26221 1.59275 1.25701 0.96454 1.01584 1.03466
0.84987 0.78389 0.79261 0.76553 1.18416 1.22155 1.22143 1.19698
0.91783 0.84815 1.41447 0.89706 1.42470 1.05762 1.01263 1.89760
1.20866 0.93588 0.83993 0.99347 1.21101 0.94825 0.83281 1.00693
1.45776 1.11329 1.04606 1.74707 1.21591 0.87907 0.86899 0.74583
1.90733 1.16873 1.88484 1.51748 1.21574 0.98498 0.87598 1.08403
1.21581 0.98192 0.92775 1.02931 1.22275 0.89760 0.81502 1.08312
1.47213 1.39188 1.30685 1.05364 1.21361 0.93308 0.92004 0.82781
1.84894 1.59168 1.64463 1.15256 1.78241 1.18889 1.20531 1.01301
1.78243 1.21161 1.18481 1.01251 1.21359 0.93975 0.91195 0.82753
1.84978 1.56598 1.67105 1.15223 0.93937 0.79586 0.94281 0.94349
0.93402 0.93247 0.74242 0.84567 0.84858 0.92917 0.92222 0.85317
0.85247 0.70397 0.70100
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.97 -59.46 13.06 21.65 0.28 -59.17 16
2 C -0.08 -4.52 5.50 84.86 0.47 -4.05 16
3 Si 0.98 44.97 29.55 68.60 2.03 47.00 16
4 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16
5 H -0.29 -13.58 7.11 99.48 0.71 -12.88 16
6 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16
7 C -0.25 -13.29 9.99 84.03 0.84 -12.45 16
8 H 0.09 4.28 7.83 -2.91 -0.02 4.25 16
9 N -0.75 -37.14 5.60 -343.47 -1.92 -39.06 16
10 C 0.15 5.31 6.37 86.38 0.55 5.87 16
11 C 0.13 4.01 5.79 86.38 0.50 4.51 16
12 N -0.71 -14.95 5.56 -463.03 -2.57 -17.53 16
13 C 0.50 10.69 7.83 87.66 0.69 11.38 16
14 O -0.60 -19.79 15.98 -3.03 -0.05 -19.83 16
15 C -0.12 -0.90 5.70 29.85 0.17 -0.73 16
16 C -0.12 -1.22 4.83 30.59 0.15 -1.08 16
17 C 0.10 0.46 6.01 86.38 0.52 0.98 16
18 N -0.50 -6.46 2.76 -755.17 -2.08 -8.55 16
19 C 0.42 7.02 9.15 179.72 1.65 8.66 16
20 O -0.43 -4.55 13.57 -89.40 -1.21 -5.77 16
21 N -0.35 -8.53 12.72 -173.66 -2.21 -10.74 16
22 N -0.35 -8.56 12.72 -173.65 -2.21 -10.77 16
23 C 0.42 7.02 9.15 179.71 1.65 8.67 16
24 O -0.44 -4.50 13.58 -89.44 -1.21 -5.71 16
25 H 0.25 14.89 8.31 -92.71 -0.77 14.12 16
26 H 0.37 20.18 7.67 -92.71 -0.71 19.47 16
27 H 0.04 1.31 8.14 -2.38 -0.02 1.29 16
28 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16
29 H 0.05 1.72 8.14 -2.38 -0.02 1.71 16
30 H 0.05 1.76 8.14 -2.39 -0.02 1.75 16
31 H 0.42 5.46 8.47 -92.71 -0.79 4.67 16
32 H 0.14 0.11 8.14 -2.39 -0.02 0.09 16
33 H 0.13 0.19 8.14 -2.39 -0.02 0.17 16
34 H 0.05 0.91 8.10 -2.39 -0.02 0.89 16
35 H 0.06 0.84 8.10 -2.38 -0.02 0.82 16
36 H 0.13 0.01 8.14 -2.39 -0.02 -0.01 16
37 H 0.13 -0.14 8.14 -2.39 -0.02 -0.16 16
38 H 0.43 0.73 9.06 -74.06 -0.67 0.06 16
39 H 0.44 -0.83 9.06 -74.06 -0.67 -1.51 16
Total: -1.00 -89.78 348.49 -5.70 -95.48
By element:
Atomic # 1 Polarization: 14.61 SS G_CDS: -1.71 Total: 12.90 kcal
Atomic # 6 Polarization: 14.58 SS G_CDS: 7.17 Total: 21.75 kcal
Atomic # 7 Polarization: -135.10 SS G_CDS: -10.71 Total: -145.82 kcal
Atomic # 8 Polarization: -28.84 SS G_CDS: -2.48 Total: -31.32 kcal
Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal
Total: -89.78 -5.70 -95.48 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001130556509.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 37.651 kcal
(2) G-P(sol) polarization free energy of solvation -89.780 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.129 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.699 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.479 kcal
(6) G-S(sol) free energy of system = (1) + (5) -57.828 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.45 seconds