Wall clock time and date at job start Tue Mar 31 2020 03:50:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21283 * 119.99324 * 2 1 4 4 N 1.34773 * 120.00309 * 180.02562 * 2 1 3 5 5 C 1.46496 * 119.99967 * 180.02562 * 4 2 1 6 6 H 1.08990 * 109.47226 * 35.00329 * 5 4 2 7 7 C 1.53002 * 109.46952 * 154.99890 * 5 4 2 8 8 C 1.50696 * 109.47020 * 295.00208 * 7 5 4 9 9 O 1.21277 * 120.00133 * 359.97438 * 8 7 5 10 10 N 1.34783 * 120.00153 * 180.02562 * 8 7 5 11 11 C 1.47070 * 136.05370 * 359.62111 * 10 8 7 12 12 C 1.53499 * 87.98338 * 207.38553 * 11 10 8 13 13 O 1.42891 * 114.20760 * 87.52072 * 12 11 10 14 14 C 1.50703 * 114.38372 * 220.33331 * 12 11 10 15 15 H 1.08001 * 119.99881 * 99.03813 * 14 12 11 16 16 C 1.37878 * 119.99964 * 279.04010 * 14 12 11 17 17 N 1.31513 * 119.99909 * 7.46478 * 16 14 12 18 18 Si 1.86797 * 119.99876 * 187.46691 * 16 14 12 19 19 H 1.48504 * 109.47014 * 84.99045 * 18 16 14 20 20 H 1.48500 * 109.47082 * 204.99049 * 18 16 14 21 21 H 1.48498 * 109.47323 * 324.99022 * 18 16 14 22 22 C 1.47067 * 136.06079 * 180.02562 * 10 8 7 23 23 C 1.50696 * 109.47029 * 274.99534 * 5 4 2 24 24 N 1.34776 * 119.99884 * 179.97438 * 23 5 4 25 25 O 1.21276 * 120.00293 * 0.02562 * 23 5 4 26 26 H 1.09000 * 109.47507 * 269.99387 * 1 2 3 27 27 H 1.09008 * 109.47326 * 29.99918 * 1 2 3 28 28 H 1.09007 * 109.47028 * 149.99288 * 1 2 3 29 29 H 0.97008 * 119.99715 * 0.02562 * 4 2 1 30 30 H 1.08999 * 109.47402 * 175.00010 * 7 5 4 31 31 H 1.09002 * 109.47178 * 55.00170 * 7 5 4 32 32 H 1.09005 * 113.46892 * 322.16301 * 11 10 8 33 33 H 1.09000 * 113.47001 * 92.60231 * 11 10 8 34 34 H 0.96702 * 114.00671 * 80.60945 * 13 12 11 35 35 H 0.96997 * 119.99539 * 180.02562 * 17 16 14 36 36 H 1.09001 * 113.46332 * 267.39616 * 22 10 8 37 37 H 1.08996 * 113.46447 * 37.83099 * 22 10 8 38 38 H 0.96997 * 120.00342 * 0.02562 * 24 23 5 39 39 H 0.97001 * 120.00159 * 179.97438 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0504 0.0000 4 7 2.1810 -1.1671 -0.0005 5 6 3.6459 -1.1670 0.0000 6 1 4.0090 -0.3257 0.5902 7 6 4.1557 -2.4748 0.6090 8 6 3.7564 -2.5422 2.0606 9 8 3.1266 -1.6335 2.5590 10 7 4.1001 -3.6118 2.8051 11 6 4.8270 -4.8701 2.5787 12 6 3.9976 -5.4899 3.7120 13 8 2.7503 -6.0445 3.2895 14 6 4.7758 -6.4014 4.6257 15 1 5.1376 -6.0341 5.5746 16 6 5.0258 -7.7043 4.2501 17 7 4.7159 -8.1102 3.0381 18 14 5.8044 -8.8928 5.4627 19 1 4.7476 -9.4917 6.3169 20 1 6.5084 -9.9683 4.7190 21 1 6.7764 -8.1634 6.3161 22 6 3.9073 -4.0375 4.1996 23 6 4.1488 -1.0424 -1.4151 24 7 5.4739 -1.0201 -1.6598 25 8 3.3611 -0.9610 -2.3336 26 1 -0.3634 -0.0001 1.0276 27 1 -0.3634 0.8900 -0.5138 28 1 -0.3633 -0.8900 -0.5140 29 1 1.6959 -2.0073 -0.0013 30 1 5.2421 -2.5138 0.5288 31 1 3.7214 -3.3188 0.0731 32 1 4.6305 -5.3155 1.6034 33 1 5.8910 -4.8037 2.8057 34 1 2.8235 -6.9269 2.9009 35 1 4.8915 -9.0269 2.7741 36 1 4.7263 -3.7491 4.8586 37 1 2.9291 -3.7749 4.6022 38 1 6.1040 -1.0848 -0.9252 39 1 5.7976 -0.9403 -2.5707 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001138322882.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:50:23 Heat of formation + Delta-G solvation = -122.646866 kcal Electronic energy + Delta-G solvation = -24831.007605 eV Core-core repulsion = 20968.080830 eV Total energy + Delta-G solvation = -3862.926774 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 299.136 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.54003 -39.54193 -38.66498 -37.63013 -34.81425 -34.10186 -33.85445 -32.38473 -31.50547 -29.60307 -28.35314 -25.93073 -25.23447 -24.37514 -21.14227 -20.39867 -20.20950 -18.55590 -17.91811 -17.38182 -17.15896 -16.79829 -16.10840 -15.86235 -15.52502 -15.10819 -14.94245 -14.85020 -14.40564 -14.22939 -13.80530 -13.52574 -13.24271 -13.02206 -12.60124 -12.42748 -12.21325 -12.10005 -11.94419 -11.75035 -11.62005 -11.13046 -11.05924 -10.57356 -10.41077 -10.35537 -9.85517 -9.80600 -9.71322 -9.29358 -9.00332 -8.91434 -8.53119 -7.97572 -6.48357 -4.57278 2.45776 2.73789 2.97694 3.10283 3.10841 3.18490 3.20013 3.33120 3.65399 4.12650 4.49793 4.61142 4.76121 4.88556 4.99715 5.08978 5.24926 5.32540 5.42499 5.47593 5.62263 5.78845 5.85475 6.05510 6.27779 6.35437 6.39830 6.48512 6.56854 6.61976 6.94833 7.13224 7.53735 7.55946 7.73231 8.09712 8.34077 8.35629 8.46219 8.57811 9.13247 9.18110 10.58885 Molecular weight = 299.14amu Principal moments of inertia in cm(-1) A = 0.024285 B = 0.003548 C = 0.003333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.681678 B = 7889.649266 C = 8397.951922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.527 3.473 3 O -0.553 6.553 4 N -0.696 5.696 5 C 0.147 3.853 6 H 0.122 0.878 7 C -0.141 4.141 8 C 0.533 3.467 9 O -0.550 6.550 10 N -0.635 5.635 11 C 0.075 3.925 12 C 0.239 3.761 13 O -0.567 6.567 14 C -0.539 4.539 15 H 0.072 0.928 16 C 0.075 3.925 17 N -0.894 5.894 18 Si 0.905 3.095 19 H -0.276 1.276 20 H -0.285 1.285 21 H -0.271 1.271 22 C 0.110 3.890 23 C 0.510 3.490 24 N -0.853 5.853 25 O -0.532 6.532 26 H 0.094 0.906 27 H 0.090 0.910 28 H 0.079 0.921 29 H 0.405 0.595 30 H 0.108 0.892 31 H 0.104 0.896 32 H 0.066 0.934 33 H 0.083 0.917 34 H 0.388 0.612 35 H 0.272 0.728 36 H 0.087 0.913 37 H 0.066 0.934 38 H 0.402 0.598 39 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.944 6.667 -6.538 9.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.315 3.685 3 O -0.431 6.431 4 N -0.347 5.347 5 C 0.037 3.963 6 H 0.140 0.860 7 C -0.181 4.181 8 C 0.322 3.678 9 O -0.430 6.430 10 N -0.369 5.369 11 C -0.048 4.048 12 C 0.198 3.802 13 O -0.377 6.377 14 C -0.577 4.577 15 H 0.090 0.910 16 C -0.128 4.128 17 N -0.532 5.532 18 Si 0.732 3.268 19 H -0.201 1.201 20 H -0.210 1.210 21 H -0.196 1.196 22 C -0.012 4.012 23 C 0.293 3.707 24 N -0.418 5.418 25 O -0.407 6.407 26 H 0.113 0.887 27 H 0.109 0.891 28 H 0.098 0.902 29 H 0.240 0.760 30 H 0.126 0.874 31 H 0.122 0.878 32 H 0.084 0.916 33 H 0.101 0.899 34 H 0.240 0.760 35 H 0.082 0.918 36 H 0.105 0.895 37 H 0.085 0.915 38 H 0.231 0.769 39 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 0.080 8.537 -6.768 10.895 hybrid contribution 1.132 -1.782 0.227 2.123 sum 1.212 6.756 -6.541 9.481 Atomic orbital electron populations 1.21826 0.91586 1.04638 1.04780 1.20642 0.90582 0.83131 0.74188 1.90671 1.70823 1.31461 1.50121 1.45453 1.04832 1.09387 1.75049 1.20478 0.83133 1.00244 0.92470 0.85993 1.21846 1.03608 0.97755 0.94925 1.19641 0.80363 0.80543 0.87271 1.90708 1.41601 1.37054 1.73607 1.49775 1.54481 1.18943 1.13687 1.24193 0.97668 0.80285 1.02652 1.19543 0.82415 0.88505 0.89770 1.86083 1.30654 1.37957 1.82976 1.21353 1.35243 0.96247 1.04818 0.90993 1.25048 0.94355 0.98246 0.95184 1.69647 1.47843 1.18493 1.17220 0.86398 0.79358 0.80207 0.80884 1.20126 1.21029 1.19610 1.23274 1.01052 0.93757 0.83080 1.21118 0.82655 0.75075 0.91853 1.43842 1.07305 1.77836 1.12847 1.90724 1.55403 1.48566 1.46040 0.88709 0.89079 0.90187 0.76039 0.87430 0.87811 0.91559 0.89889 0.76038 0.91803 0.89523 0.91538 0.76928 0.76739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.86 10.30 36.01 0.37 -1.49 16 2 C 0.53 8.22 7.77 -10.99 -0.09 8.13 16 3 O -0.55 -10.67 16.76 5.55 0.09 -10.58 16 4 N -0.70 -9.97 3.75 -54.94 -0.21 -10.18 16 5 C 0.15 2.00 1.94 -69.09 -0.13 1.86 16 6 H 0.12 1.84 7.39 -51.93 -0.38 1.45 16 7 C -0.14 -1.77 5.02 -27.88 -0.14 -1.91 16 8 C 0.53 9.20 7.94 -10.98 -0.09 9.11 16 9 O -0.55 -11.13 16.13 5.56 0.09 -11.04 16 10 N -0.64 -11.77 3.69 -185.21 -0.68 -12.45 16 11 C 0.07 1.42 7.84 -8.50 -0.07 1.36 16 12 C 0.24 5.25 1.41 -91.27 -0.13 5.12 16 13 O -0.57 -13.30 13.51 -35.23 -0.48 -13.78 16 14 C -0.54 -12.64 8.66 -34.44 -0.30 -12.93 16 15 H 0.07 1.66 7.83 -52.49 -0.41 1.25 16 16 C 0.08 1.76 5.33 -17.82 -0.09 1.67 16 17 N -0.89 -21.20 11.64 55.43 0.65 -20.55 16 18 Si 0.90 18.50 29.54 -169.99 -5.02 13.48 16 19 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 20 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 21 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 22 C 0.11 2.21 8.03 -8.51 -0.07 2.14 16 23 C 0.51 6.76 7.46 -10.99 -0.08 6.67 16 24 N -0.85 -7.42 8.74 31.22 0.27 -7.14 16 25 O -0.53 -9.05 17.16 5.56 0.10 -8.95 16 26 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 27 H 0.09 0.94 8.14 -51.92 -0.42 0.51 16 28 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.40 5.09 8.60 -40.82 -0.35 4.74 16 30 H 0.11 1.04 7.43 -51.93 -0.39 0.65 16 31 H 0.10 1.24 8.14 -51.93 -0.42 0.82 16 32 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 33 H 0.08 1.52 8.10 -51.93 -0.42 1.10 16 34 H 0.39 9.12 7.10 45.56 0.32 9.44 16 35 H 0.27 6.20 8.31 -40.82 -0.34 5.86 16 36 H 0.09 1.59 8.10 -51.93 -0.42 1.17 16 37 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 38 H 0.40 2.42 8.19 -40.82 -0.33 2.08 16 39 H 0.40 2.97 8.93 -40.82 -0.36 2.60 16 LS Contribution 342.77 15.07 5.17 5.17 Total: -1.00 -32.61 342.77 -5.26 -37.87 By element: Atomic # 1 Polarization: 22.86 SS G_CDS: -4.42 Total: 18.44 kcal Atomic # 6 Polarization: 20.54 SS G_CDS: -0.81 Total: 19.73 kcal Atomic # 7 Polarization: -50.35 SS G_CDS: 0.03 Total: -50.33 kcal Atomic # 8 Polarization: -44.16 SS G_CDS: -0.20 Total: -44.36 kcal Atomic # 14 Polarization: 18.50 SS G_CDS: -5.02 Total: 13.48 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -32.61 -5.26 -37.87 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001138322882.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.774 kcal (2) G-P(sol) polarization free energy of solvation -32.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds