Wall clock time and date at job start Tue Mar 31 2020 03:50:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21283 * 119.99324 * 2 1 4 4 N 1.34773 * 120.00309 * 180.02562 * 2 1 3 5 5 C 1.46496 * 119.99967 * 180.02562 * 4 2 1 6 6 H 1.08990 * 109.47226 * 35.00329 * 5 4 2 7 7 C 1.53002 * 109.46952 * 154.99890 * 5 4 2 8 8 C 1.50696 * 109.47020 * 295.00208 * 7 5 4 9 9 O 1.21277 * 120.00133 * 359.97438 * 8 7 5 10 10 N 1.34783 * 120.00153 * 180.02562 * 8 7 5 11 11 C 1.47070 * 136.05370 * 359.62111 * 10 8 7 12 12 C 1.53499 * 87.98338 * 207.38553 * 11 10 8 13 13 O 1.42891 * 114.20760 * 87.52072 * 12 11 10 14 14 C 1.50703 * 114.38372 * 220.33331 * 12 11 10 15 15 H 1.08001 * 119.99881 * 99.03813 * 14 12 11 16 16 C 1.37878 * 119.99964 * 279.04010 * 14 12 11 17 17 N 1.31513 * 119.99909 * 7.46478 * 16 14 12 18 18 Si 1.86797 * 119.99876 * 187.46691 * 16 14 12 19 19 H 1.48504 * 109.47014 * 84.99045 * 18 16 14 20 20 H 1.48500 * 109.47082 * 204.99049 * 18 16 14 21 21 H 1.48498 * 109.47323 * 324.99022 * 18 16 14 22 22 C 1.47067 * 136.06079 * 180.02562 * 10 8 7 23 23 C 1.50696 * 109.47029 * 274.99534 * 5 4 2 24 24 N 1.34776 * 119.99884 * 179.97438 * 23 5 4 25 25 O 1.21276 * 120.00293 * 0.02562 * 23 5 4 26 26 H 1.09000 * 109.47507 * 269.99387 * 1 2 3 27 27 H 1.09008 * 109.47326 * 29.99918 * 1 2 3 28 28 H 1.09007 * 109.47028 * 149.99288 * 1 2 3 29 29 H 0.97008 * 119.99715 * 0.02562 * 4 2 1 30 30 H 1.08999 * 109.47402 * 175.00010 * 7 5 4 31 31 H 1.09002 * 109.47178 * 55.00170 * 7 5 4 32 32 H 1.09005 * 113.46892 * 322.16301 * 11 10 8 33 33 H 1.09000 * 113.47001 * 92.60231 * 11 10 8 34 34 H 0.96702 * 114.00671 * 80.60945 * 13 12 11 35 35 H 0.96997 * 119.99539 * 180.02562 * 17 16 14 36 36 H 1.09001 * 113.46332 * 267.39616 * 22 10 8 37 37 H 1.08996 * 113.46447 * 37.83099 * 22 10 8 38 38 H 0.96997 * 120.00342 * 0.02562 * 24 23 5 39 39 H 0.97001 * 120.00159 * 179.97438 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0504 0.0000 4 7 2.1810 -1.1671 -0.0005 5 6 3.6459 -1.1670 0.0000 6 1 4.0090 -0.3257 0.5902 7 6 4.1557 -2.4748 0.6090 8 6 3.7564 -2.5422 2.0606 9 8 3.1266 -1.6335 2.5590 10 7 4.1001 -3.6118 2.8051 11 6 4.8270 -4.8701 2.5787 12 6 3.9976 -5.4899 3.7120 13 8 2.7503 -6.0445 3.2895 14 6 4.7758 -6.4014 4.6257 15 1 5.1376 -6.0341 5.5746 16 6 5.0258 -7.7043 4.2501 17 7 4.7159 -8.1102 3.0381 18 14 5.8044 -8.8928 5.4627 19 1 4.7476 -9.4917 6.3169 20 1 6.5084 -9.9683 4.7190 21 1 6.7764 -8.1634 6.3161 22 6 3.9073 -4.0375 4.1996 23 6 4.1488 -1.0424 -1.4151 24 7 5.4739 -1.0201 -1.6598 25 8 3.3611 -0.9610 -2.3336 26 1 -0.3634 -0.0001 1.0276 27 1 -0.3634 0.8900 -0.5138 28 1 -0.3633 -0.8900 -0.5140 29 1 1.6959 -2.0073 -0.0013 30 1 5.2421 -2.5138 0.5288 31 1 3.7214 -3.3188 0.0731 32 1 4.6305 -5.3155 1.6034 33 1 5.8910 -4.8037 2.8057 34 1 2.8235 -6.9269 2.9009 35 1 4.8915 -9.0269 2.7741 36 1 4.7263 -3.7491 4.8586 37 1 2.9291 -3.7749 4.6022 38 1 6.1040 -1.0848 -0.9252 39 1 5.7976 -0.9403 -2.5707 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001138322882.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:50:23 Heat of formation + Delta-G solvation = -152.115440 kcal Electronic energy + Delta-G solvation = -24832.285458 eV Core-core repulsion = 20968.080830 eV Total energy + Delta-G solvation = -3864.204628 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 299.136 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.74619 -40.97541 -39.81482 -39.13013 -36.06103 -35.77988 -34.82253 -34.17624 -32.63728 -30.86019 -29.63999 -27.44394 -26.79313 -25.67478 -22.28957 -21.85499 -21.36422 -19.97969 -19.29389 -18.75240 -18.29337 -17.97356 -17.43662 -17.20238 -16.89038 -16.60050 -16.28565 -15.99665 -15.97076 -15.50311 -15.12899 -14.72425 -14.58043 -14.51350 -13.99574 -13.75999 -13.53704 -13.42975 -13.10707 -13.07452 -12.78452 -12.75676 -12.66824 -12.22997 -12.13814 -11.52442 -11.28470 -11.03110 -10.92177 -10.73421 -10.65447 -10.20356 -10.14635 -9.53256 -8.24456 -6.38335 1.39888 1.48374 1.53614 1.58586 1.59950 1.63578 1.96275 2.08461 2.43480 2.63864 2.98805 3.37999 3.45670 3.74379 3.89106 3.97066 4.04103 4.18430 4.32951 4.45805 4.51313 4.57055 4.63147 4.68018 4.86323 4.95461 5.00457 5.00796 5.26730 5.28745 5.75073 5.83246 5.98639 6.31747 6.45526 6.66268 6.91579 7.14746 7.18138 7.23780 7.34365 7.37624 8.81600 Molecular weight = 299.14amu Principal moments of inertia in cm(-1) A = 0.024285 B = 0.003548 C = 0.003333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.681678 B = 7889.649266 C = 8397.951922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.513 3.487 3 O -0.599 6.599 4 N -0.696 5.696 5 C 0.146 3.854 6 H 0.107 0.893 7 C -0.126 4.126 8 C 0.531 3.469 9 O -0.582 6.582 10 N -0.635 5.635 11 C 0.093 3.907 12 C 0.217 3.783 13 O -0.579 6.579 14 C -0.556 4.556 15 H 0.069 0.931 16 C 0.041 3.959 17 N -0.908 5.908 18 Si 0.958 3.042 19 H -0.281 1.281 20 H -0.283 1.283 21 H -0.268 1.268 22 C 0.109 3.891 23 C 0.512 3.488 24 N -0.829 5.829 25 O -0.574 6.574 26 H 0.104 0.896 27 H 0.097 0.903 28 H 0.103 0.897 29 H 0.412 0.588 30 H 0.145 0.855 31 H 0.118 0.882 32 H 0.070 0.930 33 H 0.094 0.906 34 H 0.384 0.616 35 H 0.273 0.727 36 H 0.101 0.899 37 H 0.051 0.949 38 H 0.418 0.582 39 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.007 6.134 -7.060 9.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.302 3.698 3 O -0.481 6.481 4 N -0.347 5.347 5 C 0.036 3.964 6 H 0.124 0.876 7 C -0.166 4.166 8 C 0.322 3.678 9 O -0.463 6.463 10 N -0.368 5.368 11 C -0.030 4.030 12 C 0.176 3.824 13 O -0.388 6.388 14 C -0.594 4.594 15 H 0.087 0.913 16 C -0.161 4.161 17 N -0.547 5.547 18 Si 0.784 3.216 19 H -0.207 1.207 20 H -0.208 1.208 21 H -0.193 1.193 22 C -0.013 4.013 23 C 0.295 3.705 24 N -0.394 5.394 25 O -0.452 6.452 26 H 0.122 0.878 27 H 0.116 0.884 28 H 0.122 0.878 29 H 0.249 0.751 30 H 0.162 0.838 31 H 0.136 0.864 32 H 0.088 0.912 33 H 0.112 0.888 34 H 0.235 0.765 35 H 0.083 0.917 36 H 0.119 0.881 37 H 0.070 0.930 38 H 0.250 0.750 39 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 1.192 7.981 -7.288 10.874 hybrid contribution 0.809 -1.609 0.436 1.853 sum 2.002 6.372 -6.853 9.569 Atomic orbital electron populations 1.21866 0.88347 1.06202 1.05813 1.21482 0.92398 0.82701 0.73195 1.90636 1.72075 1.32950 1.52410 1.45553 1.05399 1.09544 1.74163 1.20483 0.83007 1.00099 0.92794 0.87571 1.21834 1.05909 0.97623 0.91245 1.20377 0.79272 0.79426 0.88706 1.90703 1.42889 1.38083 1.74658 1.49762 1.54700 1.19324 1.13050 1.23925 0.97657 0.79823 1.01606 1.19792 0.82315 0.89032 0.91290 1.86072 1.31895 1.37774 1.83105 1.21579 1.35621 0.97064 1.05163 0.91266 1.25600 0.94834 0.99298 0.96360 1.69697 1.48239 1.18727 1.18014 0.85568 0.78428 0.78484 0.79121 1.20726 1.20838 1.19272 1.23242 1.00879 0.92889 0.84318 1.20978 0.83684 0.74927 0.90954 1.43629 1.05988 1.75608 1.14184 1.90711 1.56765 1.50914 1.46858 0.87755 0.88415 0.87781 0.75144 0.83764 0.86412 0.91170 0.88787 0.76453 0.91713 0.88100 0.92997 0.75032 0.75516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.43 10.30 71.24 0.73 -2.69 16 2 C 0.51 15.92 7.77 87.66 0.68 16.60 16 3 O -0.60 -23.53 16.76 -3.04 -0.05 -23.58 16 4 N -0.70 -19.45 3.75 -446.12 -1.67 -21.12 16 5 C 0.15 3.80 1.94 44.25 0.09 3.88 16 6 H 0.11 3.15 7.39 -2.39 -0.02 3.13 16 7 C -0.13 -2.86 5.02 29.85 0.15 -2.71 16 8 C 0.53 17.51 7.94 87.65 0.70 18.21 16 9 O -0.58 -23.21 16.13 -3.02 -0.05 -23.26 16 10 N -0.64 -22.56 3.69 -858.75 -3.17 -25.72 16 11 C 0.09 3.35 7.84 83.18 0.65 4.00 16 12 C 0.22 9.35 1.41 -11.21 -0.02 9.33 16 13 O -0.58 -27.06 13.51 -148.98 -2.01 -29.08 16 14 C -0.56 -25.67 8.66 25.60 0.22 -25.45 16 15 H 0.07 3.15 7.83 -2.91 -0.02 3.12 16 16 C 0.04 1.88 5.33 84.66 0.45 2.33 16 17 N -0.91 -42.19 11.64 21.45 0.25 -41.95 16 18 Si 0.96 37.14 29.54 68.60 2.03 39.17 16 19 H -0.28 -11.09 7.11 99.48 0.71 -10.39 16 20 H -0.28 -10.81 7.11 99.48 0.71 -10.10 16 21 H -0.27 -10.17 7.11 99.48 0.71 -9.47 16 22 C 0.11 4.30 8.03 83.17 0.67 4.97 16 23 C 0.51 12.75 7.46 87.66 0.65 13.40 16 24 N -0.83 -12.25 8.74 -173.54 -1.52 -13.77 16 25 O -0.57 -19.00 17.16 -3.02 -0.05 -19.06 16 26 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 27 H 0.10 1.92 8.14 -2.38 -0.02 1.90 16 28 H 0.10 1.65 8.14 -2.38 -0.02 1.63 16 29 H 0.41 9.95 8.60 -92.70 -0.80 9.15 16 30 H 0.14 2.21 7.43 -2.39 -0.02 2.19 16 31 H 0.12 2.46 8.14 -2.39 -0.02 2.44 16 32 H 0.07 2.49 8.14 -2.38 -0.02 2.47 16 33 H 0.09 3.20 8.10 -2.39 -0.02 3.18 16 34 H 0.38 18.07 7.10 -74.06 -0.53 17.54 16 35 H 0.27 12.18 8.31 -92.71 -0.77 11.41 16 36 H 0.10 3.62 8.10 -2.39 -0.02 3.60 16 37 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 38 H 0.42 3.64 8.19 -92.71 -0.76 2.88 16 39 H 0.41 5.00 8.93 -92.71 -0.83 4.18 16 Total: -1.00 -70.47 342.77 -3.04 -73.51 By element: Atomic # 1 Polarization: 44.75 SS G_CDS: -1.77 Total: 42.98 kcal Atomic # 6 Polarization: 36.89 SS G_CDS: 4.98 Total: 41.87 kcal Atomic # 7 Polarization: -96.45 SS G_CDS: -6.11 Total: -102.56 kcal Atomic # 8 Polarization: -92.81 SS G_CDS: -2.16 Total: -94.97 kcal Atomic # 14 Polarization: 37.14 SS G_CDS: 2.03 Total: 39.17 kcal Total: -70.47 -3.04 -73.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001138322882.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.601 kcal (2) G-P(sol) polarization free energy of solvation -70.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds