Wall clock time and date at job start Tue Mar 31 2020 03:23:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46900 * 109.47055 * 2 1 4 4 C 1.46896 * 111.00394 * 163.99261 * 3 2 1 5 5 C 1.50704 * 109.46824 * 287.83549 * 4 3 2 6 6 H 1.07998 * 120.00325 * 354.69616 * 5 4 3 7 7 C 1.37879 * 120.00081 * 174.97768 * 5 4 3 8 8 N 1.31515 * 119.99621 * 359.97438 * 7 5 4 9 9 Si 1.86794 * 120.00239 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47020 * 59.99755 * 9 7 5 11 11 H 1.48495 * 109.47358 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47143 * 299.99721 * 9 7 5 13 13 C 1.39007 * 110.99844 * 287.94402 * 3 2 1 14 14 N 1.32420 * 119.70705 * 304.19165 * 13 3 2 15 15 C 1.31942 * 121.62463 * 179.97438 * 14 13 3 16 16 C 1.38068 * 120.85720 * 0.02562 * 15 14 13 17 17 C 1.38843 * 119.32506 * 359.97438 * 16 15 14 18 18 C 1.38346 * 118.50369 * 359.75069 * 17 16 15 19 19 S 1.76204 * 120.44862 * 180.26213 * 18 17 16 20 20 O 1.42094 * 106.40206 * 358.85518 * 19 18 17 21 21 O 1.42103 * 106.40098 * 131.77202 * 19 18 17 22 22 N 1.65603 * 107.21719 * 245.31230 * 19 18 17 23 23 C 1.46501 * 119.99754 * 63.63436 * 22 19 18 24 24 H 1.09002 * 109.46849 * 61.94005 * 1 2 3 25 25 H 1.08999 * 109.47055 * 181.93404 * 1 2 3 26 26 H 1.08998 * 109.47332 * 301.93586 * 1 2 3 27 27 H 1.09004 * 109.47238 * 240.00049 * 2 1 3 28 28 H 1.09002 * 109.47084 * 119.99886 * 2 1 3 29 29 H 1.08999 * 109.47484 * 167.83256 * 4 3 2 30 30 H 1.09001 * 109.47373 * 47.82913 * 4 3 2 31 31 H 0.97005 * 119.99908 * 179.97438 * 8 7 5 32 32 H 1.07998 * 119.57388 * 180.02562 * 15 14 13 33 33 H 1.07998 * 120.33676 * 180.02562 * 16 15 14 34 34 H 1.08001 * 120.74852 * 180.02562 * 17 16 15 35 35 H 0.96996 * 119.99757 * 243.64140 * 22 19 18 36 36 H 1.08995 * 109.47483 * 304.97204 * 23 22 19 37 37 H 1.09007 * 109.46841 * 64.97113 * 23 22 19 38 38 H 1.09001 * 109.46570 * 184.96155 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4380 1.4420 0.3782 5 6 3.5772 1.1528 1.8506 6 1 2.6958 1.0320 2.4630 7 6 4.8298 1.0482 2.4172 8 7 5.9031 1.2004 1.6726 9 14 5.0024 0.6905 4.2425 10 1 4.3575 -0.6101 4.5551 11 1 6.4422 0.6273 4.6005 12 1 4.3448 1.7694 5.0227 13 6 1.8087 1.9879 -1.2346 14 7 2.2941 1.4257 -2.3309 15 6 2.1160 1.9649 -3.5219 16 6 1.4122 3.1437 -3.6675 17 6 0.8868 3.7654 -2.5427 18 6 1.0848 3.1734 -1.3081 19 16 0.4344 3.9145 0.1522 20 8 -0.2125 5.1110 -0.2590 21 8 -0.2268 2.8797 0.8671 22 7 1.7236 4.3763 1.0834 23 6 2.6540 5.3959 0.5924 24 1 -0.3633 0.4834 -0.9069 25 1 -0.3633 -1.0271 0.0347 26 1 -0.3634 0.5436 0.8721 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.8314 2.4358 0.1642 30 1 3.9962 0.6997 -0.1922 31 1 6.7844 1.1272 2.0712 32 1 2.5261 1.4778 -4.3942 33 1 1.2712 3.5775 -4.6465 34 1 0.3321 4.6879 -2.6301 35 1 1.8628 3.9716 1.9539 36 1 3.0426 5.0949 -0.3804 37 1 2.1319 6.3480 0.4964 38 1 3.4794 5.5035 1.2962 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166591499.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:23:33 Heat of formation + Delta-G solvation = -23.169021 kcal Electronic energy + Delta-G solvation = -23807.896531 eV Core-core repulsion = 20392.036311 eV Total energy + Delta-G solvation = -3415.860220 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 299.109 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.27213 -37.04194 -36.36598 -35.36366 -34.47170 -32.79429 -32.41805 -30.89553 -29.56011 -26.48185 -25.56687 -23.95061 -23.19730 -22.44519 -20.39605 -19.20810 -17.67402 -17.05932 -16.78207 -16.48764 -16.06219 -15.46860 -15.14963 -14.51461 -14.33721 -14.14587 -13.61971 -13.44356 -13.15237 -12.99389 -12.80120 -12.45839 -12.32008 -12.17949 -11.70544 -11.58635 -11.13908 -11.09595 -11.03070 -10.97418 -10.78992 -10.54268 -10.28073 -10.12624 -10.00728 -9.65285 -9.29735 -9.12425 -8.91255 -8.54456 -7.79815 -6.12489 -4.15259 0.74324 1.02809 1.32870 3.28566 3.33370 3.36173 3.39637 3.75320 4.15244 4.17240 4.42575 4.73548 4.74197 4.89290 5.22930 5.25434 5.38676 5.45389 5.47197 5.72925 5.82086 5.88710 6.00633 6.01153 6.09243 6.20781 6.26177 6.42452 6.58595 6.72848 6.98506 7.09651 7.26302 7.49312 7.68652 7.78890 7.97245 8.06126 8.34916 8.93365 9.49329 10.97709 Molecular weight = 299.11amu Principal moments of inertia in cm(-1) A = 0.015415 B = 0.006879 C = 0.006130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1815.942789 B = 4069.391219 C = 4566.887991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.065 3.935 3 N -0.501 5.501 4 C 0.203 3.797 5 C -0.511 4.511 6 H 0.070 0.930 7 C 0.059 3.941 8 N -0.895 5.895 9 Si 0.900 3.100 10 H -0.276 1.276 11 H -0.289 1.289 12 H -0.275 1.275 13 C 0.422 3.578 14 N -0.523 5.523 15 C 0.162 3.838 16 C -0.218 4.218 17 C 0.021 3.979 18 C -0.719 4.719 19 S 2.715 3.285 20 O -0.982 6.982 21 O -0.936 6.936 22 N -1.102 6.102 23 C 0.094 3.906 24 H 0.034 0.966 25 H 0.048 0.952 26 H 0.084 0.916 27 H 0.040 0.960 28 H 0.094 0.906 29 H 0.027 0.973 30 H 0.013 0.987 31 H 0.263 0.737 32 H 0.156 0.844 33 H 0.139 0.861 34 H 0.150 0.850 35 H 0.428 0.572 36 H 0.051 0.949 37 H 0.058 0.942 38 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.482 5.708 -7.585 12.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.061 4.061 3 N -0.226 5.226 4 C 0.080 3.920 5 C -0.549 4.549 6 H 0.088 0.912 7 C -0.143 4.143 8 N -0.534 5.534 9 Si 0.727 3.273 10 H -0.202 1.202 11 H -0.215 1.215 12 H -0.200 1.200 13 C 0.193 3.807 14 N -0.236 5.236 15 C 0.002 3.998 16 C -0.239 4.239 17 C -0.006 4.006 18 C -0.808 4.808 19 S 2.801 3.199 20 O -0.972 6.972 21 O -0.925 6.925 22 N -0.863 5.863 23 C -0.054 4.054 24 H 0.053 0.947 25 H 0.067 0.933 26 H 0.103 0.897 27 H 0.058 0.942 28 H 0.112 0.888 29 H 0.045 0.955 30 H 0.031 0.969 31 H 0.072 0.928 32 H 0.173 0.827 33 H 0.156 0.844 34 H 0.168 0.832 35 H 0.264 0.736 36 H 0.069 0.931 37 H 0.076 0.924 38 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -7.923 5.368 -7.096 11.914 hybrid contribution 1.095 -0.320 -0.122 1.147 sum -6.828 5.047 -7.218 11.144 Atomic orbital electron populations 1.21880 0.95723 1.00354 1.02796 1.22011 0.94728 0.87143 1.02253 1.60689 1.24492 1.19759 1.17658 1.19826 0.77944 0.97341 0.96852 1.21065 0.92480 1.48761 0.92628 0.91161 1.24970 0.95682 0.95317 0.98329 1.69959 0.97914 1.49736 1.35784 0.86537 0.76789 0.79108 0.84843 1.20152 1.21479 1.20036 1.19876 0.83699 0.87407 0.89705 1.68109 1.20990 1.35100 0.99410 1.22916 0.90561 0.91276 0.95036 1.22082 1.03433 0.98715 0.99706 1.21324 0.91452 0.97109 0.90732 1.31693 1.19113 1.10375 1.19591 1.01285 0.72714 0.72970 0.72951 1.93527 1.72631 1.47413 1.83649 1.93579 1.71518 1.56971 1.70478 1.54996 1.46383 1.52792 1.32152 1.21331 0.93747 0.90173 1.00113 0.94717 0.93349 0.89665 0.94174 0.88754 0.95537 0.96892 0.92765 0.82709 0.84354 0.83242 0.73604 0.93073 0.92372 0.89828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.70 9.45 37.16 0.35 -2.35 16 2 C 0.07 1.32 5.48 -3.82 -0.02 1.30 16 3 N -0.50 -10.64 3.06 -174.56 -0.53 -11.17 16 4 C 0.20 4.99 4.60 -4.98 -0.02 4.96 16 5 C -0.51 -13.24 8.33 -34.44 -0.29 -13.53 16 6 H 0.07 1.81 7.79 -52.49 -0.41 1.40 16 7 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 8 N -0.90 -25.17 13.29 55.43 0.74 -24.43 16 9 Si 0.90 20.61 29.54 -169.99 -5.02 15.59 16 10 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 11 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 12 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 13 C 0.42 8.24 4.40 -155.01 -0.68 7.56 16 14 N -0.52 -9.78 9.43 -12.44 -0.12 -9.90 16 15 C 0.16 2.31 11.17 -17.57 -0.20 2.12 16 16 C -0.22 -2.72 10.10 -39.42 -0.40 -3.12 16 17 C 0.02 0.30 9.66 -39.32 -0.38 -0.08 16 18 C -0.72 -12.39 5.87 -39.22 -0.23 -12.62 16 19 S 2.72 46.84 5.29 -107.50 -0.57 46.27 16 20 O -0.98 -17.42 16.83 -57.17 -0.96 -18.38 16 21 O -0.94 -18.25 15.31 -57.17 -0.88 -19.13 16 22 N -1.10 -17.74 6.19 -16.63 -0.10 -17.84 16 23 C 0.09 1.29 11.13 59.85 0.67 1.95 16 24 H 0.03 0.62 7.64 -51.93 -0.40 0.22 16 25 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 26 H 0.08 1.64 6.72 -51.93 -0.35 1.29 16 27 H 0.04 0.81 7.41 -51.93 -0.38 0.43 16 28 H 0.09 2.00 7.16 -51.93 -0.37 1.62 16 29 H 0.03 0.68 7.97 -51.93 -0.41 0.27 16 30 H 0.01 0.36 8.05 -51.93 -0.42 -0.06 16 31 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 32 H 0.16 1.66 8.06 -52.49 -0.42 1.24 16 33 H 0.14 1.18 8.06 -52.49 -0.42 0.76 16 34 H 0.15 1.77 7.43 -52.49 -0.39 1.38 16 35 H 0.43 6.95 8.96 -34.47 -0.31 6.64 16 36 H 0.05 0.70 8.12 -51.93 -0.42 0.28 16 37 H 0.06 0.69 8.14 -51.92 -0.42 0.26 16 38 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 332.02 15.07 5.00 5.00 Total: -1.00 -31.92 332.02 -8.85 -40.78 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: -5.11 Total: 5.55 kcal Atomic # 6 Polarization: -11.03 SS G_CDS: -1.30 Total: -12.33 kcal Atomic # 7 Polarization: -63.32 SS G_CDS: -0.02 Total: -63.34 kcal Atomic # 8 Polarization: -35.68 SS G_CDS: -1.84 Total: -37.51 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Atomic # 16 Polarization: 46.84 SS G_CDS: -0.57 Total: 46.27 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -31.92 -8.85 -40.78 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166591499.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.607 kcal (2) G-P(sol) polarization free energy of solvation -31.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds