Wall clock time and date at job start Tue Mar 31 2020 03:23:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46900 * 109.47055 * 2 1 4 4 C 1.46896 * 111.00394 * 163.99261 * 3 2 1 5 5 C 1.50704 * 109.46824 * 287.83549 * 4 3 2 6 6 H 1.07998 * 120.00325 * 354.69616 * 5 4 3 7 7 C 1.37879 * 120.00081 * 174.97768 * 5 4 3 8 8 N 1.31515 * 119.99621 * 359.97438 * 7 5 4 9 9 Si 1.86794 * 120.00239 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47020 * 59.99755 * 9 7 5 11 11 H 1.48495 * 109.47358 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47143 * 299.99721 * 9 7 5 13 13 C 1.39007 * 110.99844 * 287.94402 * 3 2 1 14 14 N 1.32420 * 119.70705 * 304.19165 * 13 3 2 15 15 C 1.31942 * 121.62463 * 179.97438 * 14 13 3 16 16 C 1.38068 * 120.85720 * 0.02562 * 15 14 13 17 17 C 1.38843 * 119.32506 * 359.97438 * 16 15 14 18 18 C 1.38346 * 118.50369 * 359.75069 * 17 16 15 19 19 S 1.76204 * 120.44862 * 180.26213 * 18 17 16 20 20 O 1.42094 * 106.40206 * 358.85518 * 19 18 17 21 21 O 1.42103 * 106.40098 * 131.77202 * 19 18 17 22 22 N 1.65603 * 107.21719 * 245.31230 * 19 18 17 23 23 C 1.46501 * 119.99754 * 63.63436 * 22 19 18 24 24 H 1.09002 * 109.46849 * 61.94005 * 1 2 3 25 25 H 1.08999 * 109.47055 * 181.93404 * 1 2 3 26 26 H 1.08998 * 109.47332 * 301.93586 * 1 2 3 27 27 H 1.09004 * 109.47238 * 240.00049 * 2 1 3 28 28 H 1.09002 * 109.47084 * 119.99886 * 2 1 3 29 29 H 1.08999 * 109.47484 * 167.83256 * 4 3 2 30 30 H 1.09001 * 109.47373 * 47.82913 * 4 3 2 31 31 H 0.97005 * 119.99908 * 179.97438 * 8 7 5 32 32 H 1.07998 * 119.57388 * 180.02562 * 15 14 13 33 33 H 1.07998 * 120.33676 * 180.02562 * 16 15 14 34 34 H 1.08001 * 120.74852 * 180.02562 * 17 16 15 35 35 H 0.96996 * 119.99757 * 243.64140 * 22 19 18 36 36 H 1.08995 * 109.47483 * 304.97204 * 23 22 19 37 37 H 1.09007 * 109.46841 * 64.97113 * 23 22 19 38 38 H 1.09001 * 109.46570 * 184.96155 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4380 1.4420 0.3782 5 6 3.5772 1.1528 1.8506 6 1 2.6958 1.0320 2.4630 7 6 4.8298 1.0482 2.4172 8 7 5.9031 1.2004 1.6726 9 14 5.0024 0.6905 4.2425 10 1 4.3575 -0.6101 4.5551 11 1 6.4422 0.6273 4.6005 12 1 4.3448 1.7694 5.0227 13 6 1.8087 1.9879 -1.2346 14 7 2.2941 1.4257 -2.3309 15 6 2.1160 1.9649 -3.5219 16 6 1.4122 3.1437 -3.6675 17 6 0.8868 3.7654 -2.5427 18 6 1.0848 3.1734 -1.3081 19 16 0.4344 3.9145 0.1522 20 8 -0.2125 5.1110 -0.2590 21 8 -0.2268 2.8797 0.8671 22 7 1.7236 4.3763 1.0834 23 6 2.6540 5.3959 0.5924 24 1 -0.3633 0.4834 -0.9069 25 1 -0.3633 -1.0271 0.0347 26 1 -0.3634 0.5436 0.8721 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.8314 2.4358 0.1642 30 1 3.9962 0.6997 -0.1922 31 1 6.7844 1.1272 2.0712 32 1 2.5261 1.4778 -4.3942 33 1 1.2712 3.5775 -4.6465 34 1 0.3321 4.6879 -2.6301 35 1 1.8628 3.9716 1.9539 36 1 3.0426 5.0949 -0.3804 37 1 2.1319 6.3480 0.4964 38 1 3.4794 5.5035 1.2962 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166591499.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:23:33 Heat of formation + Delta-G solvation = -47.025109 kcal Electronic energy + Delta-G solvation = -23808.931008 eV Core-core repulsion = 20392.036311 eV Total energy + Delta-G solvation = -3416.894698 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 299.109 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.58333 -38.49194 -37.83511 -36.78091 -35.70458 -34.78745 -33.65774 -32.27585 -31.19153 -28.27725 -26.73383 -25.17526 -24.68686 -24.22015 -21.91118 -20.51802 -18.98170 -18.60380 -18.29559 -17.87512 -17.58933 -16.94256 -16.72344 -16.01412 -15.77863 -15.55498 -15.00729 -14.62731 -14.51403 -14.48313 -14.22509 -14.03412 -13.77227 -13.67103 -13.12990 -13.00458 -12.88130 -12.71541 -12.55541 -12.41113 -12.31835 -12.17882 -12.00480 -11.85030 -11.49293 -11.26137 -10.71012 -10.59137 -10.36524 -10.16838 -9.47530 -8.17992 -6.27408 -0.51436 -0.26856 0.13828 1.45957 1.47369 1.55224 2.11448 2.40595 2.52404 2.81742 2.83188 3.15824 3.46816 3.55831 3.84185 4.11072 4.13719 4.25484 4.31181 4.39830 4.50592 4.66932 4.72460 4.79459 4.89639 4.92652 4.95559 5.03863 5.09504 5.17052 5.22783 5.47796 5.53887 5.70963 6.02850 6.04349 6.20032 6.53104 6.81976 6.87194 7.41608 8.92491 Molecular weight = 299.11amu Principal moments of inertia in cm(-1) A = 0.015415 B = 0.006879 C = 0.006130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1815.942789 B = 4069.391219 C = 4566.887991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.065 3.935 3 N -0.500 5.500 4 C 0.228 3.772 5 C -0.515 4.515 6 H 0.069 0.931 7 C 0.012 3.988 8 N -0.930 5.930 9 Si 0.963 3.037 10 H -0.273 1.273 11 H -0.288 1.288 12 H -0.263 1.263 13 C 0.390 3.610 14 N -0.558 5.558 15 C 0.150 3.850 16 C -0.191 4.191 17 C 0.015 3.985 18 C -0.726 4.726 19 S 2.726 3.274 20 O -0.987 6.987 21 O -0.963 6.963 22 N -1.107 6.107 23 C 0.086 3.914 24 H 0.034 0.966 25 H 0.074 0.926 26 H 0.072 0.928 27 H 0.033 0.967 28 H 0.077 0.923 29 H 0.009 0.991 30 H -0.028 1.028 31 H 0.263 0.737 32 H 0.191 0.809 33 H 0.190 0.810 34 H 0.176 0.824 35 H 0.425 0.575 36 H 0.048 0.952 37 H 0.080 0.920 38 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.380 6.680 -8.708 13.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.062 4.062 3 N -0.224 5.224 4 C 0.104 3.896 5 C -0.554 4.554 6 H 0.087 0.913 7 C -0.187 4.187 8 N -0.570 5.570 9 Si 0.788 3.212 10 H -0.198 1.198 11 H -0.214 1.214 12 H -0.188 1.188 13 C 0.161 3.839 14 N -0.271 5.271 15 C -0.008 4.008 16 C -0.211 4.211 17 C -0.012 4.012 18 C -0.816 4.816 19 S 2.813 3.187 20 O -0.977 6.977 21 O -0.954 6.954 22 N -0.868 5.868 23 C -0.060 4.060 24 H 0.053 0.947 25 H 0.093 0.907 26 H 0.091 0.909 27 H 0.052 0.948 28 H 0.095 0.905 29 H 0.027 0.973 30 H -0.010 1.010 31 H 0.072 0.928 32 H 0.208 0.792 33 H 0.207 0.793 34 H 0.194 0.806 35 H 0.261 0.739 36 H 0.067 0.933 37 H 0.098 0.902 38 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -8.851 6.357 -8.230 13.656 hybrid contribution 1.364 -0.581 0.037 1.483 sum -7.487 5.776 -8.193 12.512 Atomic orbital electron populations 1.21752 0.93714 1.01802 1.02116 1.21991 0.96285 0.86882 1.01006 1.60530 1.21889 1.20049 1.19953 1.19318 0.79876 0.94760 0.95641 1.21288 0.92508 1.48184 0.93383 0.91265 1.25765 0.95322 0.95056 1.02572 1.70085 0.98343 1.50937 1.37635 0.85535 0.76703 0.79210 0.79777 1.19807 1.21360 1.18764 1.19777 0.86132 0.88709 0.89324 1.68007 1.22002 1.36459 1.00681 1.23620 0.90509 0.92170 0.94504 1.22615 1.00165 0.97018 1.01297 1.21786 0.91437 0.97936 0.90038 1.31607 1.19351 1.09793 1.20861 1.00813 0.72662 0.72430 0.72843 1.93509 1.73061 1.47374 1.83781 1.93539 1.72616 1.57873 1.71328 1.54979 1.46592 1.53319 1.31915 1.21535 0.93928 0.90450 1.00092 0.94711 0.90747 0.90916 0.94836 0.90491 0.97312 1.00991 0.92785 0.79193 0.79304 0.80619 0.73931 0.93343 0.90150 0.89167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.91 9.45 71.98 0.68 -4.23 16 2 C 0.06 2.71 5.48 86.30 0.47 3.19 16 3 N -0.50 -21.87 3.06 -706.20 -2.16 -24.03 16 4 C 0.23 11.70 4.60 85.56 0.39 12.10 16 5 C -0.52 -27.48 8.33 25.60 0.21 -27.27 16 6 H 0.07 3.64 7.79 -2.91 -0.02 3.62 16 7 C 0.01 0.63 5.46 84.66 0.46 1.09 16 8 N -0.93 -53.57 13.29 21.45 0.28 -53.28 16 9 Si 0.96 42.55 29.54 68.60 2.03 44.58 16 10 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 11 H -0.29 -12.60 7.11 99.48 0.71 -11.90 16 12 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 13 C 0.39 15.29 4.40 133.05 0.59 15.87 16 14 N -0.56 -20.69 9.43 -193.26 -1.82 -22.51 16 15 C 0.15 3.91 11.17 84.64 0.95 4.86 16 16 C -0.19 -3.96 10.10 22.37 0.23 -3.74 16 17 C 0.01 0.38 9.66 22.44 0.22 0.60 16 18 C -0.73 -24.38 5.87 22.50 0.13 -24.25 16 19 S 2.73 93.00 5.29 -56.49 -0.30 92.70 16 20 O -0.99 -33.63 16.83 -128.00 -2.15 -35.79 16 21 O -0.96 -37.97 15.31 -128.00 -1.96 -39.93 16 22 N -1.11 -35.69 6.19 -206.53 -1.28 -36.97 16 23 C 0.09 2.32 11.13 127.77 1.42 3.74 16 24 H 0.03 1.22 7.64 -2.39 -0.02 1.21 16 25 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 26 H 0.07 2.81 6.72 -2.39 -0.02 2.80 16 27 H 0.03 1.41 7.41 -2.38 -0.02 1.40 16 28 H 0.08 3.40 7.16 -2.39 -0.02 3.39 16 29 H 0.01 0.48 7.97 -2.39 -0.02 0.46 16 30 H -0.03 -1.63 8.05 -2.39 -0.02 -1.65 16 31 H 0.26 14.42 8.31 -92.70 -0.77 13.65 16 32 H 0.19 3.41 8.06 -2.91 -0.02 3.39 16 33 H 0.19 2.02 8.06 -2.91 -0.02 2.00 16 34 H 0.18 3.50 7.43 -2.91 -0.02 3.48 16 35 H 0.43 14.10 8.96 -96.75 -0.87 13.23 16 36 H 0.05 1.31 8.12 -2.39 -0.02 1.29 16 37 H 0.08 1.78 8.14 -2.38 -0.02 1.76 16 38 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 Total: -1.00 -70.76 332.02 -1.41 -72.17 By element: Atomic # 1 Polarization: 20.89 SS G_CDS: 0.21 Total: 21.10 kcal Atomic # 6 Polarization: -23.78 SS G_CDS: 5.75 Total: -18.03 kcal Atomic # 7 Polarization: -131.81 SS G_CDS: -4.98 Total: -136.79 kcal Atomic # 8 Polarization: -71.60 SS G_CDS: -4.11 Total: -75.72 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.58 kcal Atomic # 16 Polarization: 93.00 SS G_CDS: -0.30 Total: 92.70 kcal Total: -70.76 -1.41 -72.17 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166591499.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.144 kcal (2) G-P(sol) polarization free energy of solvation -70.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds