Wall clock time and date at job start Tue Mar 31 2020 03:28:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31071 * 1 3 3 Si 1.86806 * 119.99684 * 2 1 4 4 H 1.48501 * 109.46976 * 269.99585 * 3 2 1 5 5 H 1.48495 * 109.47135 * 29.99912 * 3 2 1 6 6 H 1.48504 * 109.46931 * 149.99781 * 3 2 1 7 7 C 1.39691 * 120.00309 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00363 * 179.97438 * 7 2 1 9 9 C 1.40917 * 120.00079 * 0.02562 * 7 2 1 10 10 C 1.38955 * 126.93472 * 20.15547 * 9 7 2 11 11 N 1.35634 * 109.25182 * 180.02562 * 10 9 7 12 12 H 0.96999 * 124.69152 * 180.02562 * 11 10 9 13 13 C 1.38149 * 110.60505 * 0.02562 * 11 10 9 14 14 C 1.39173 * 132.75601 * 180.02562 * 13 11 10 15 15 C 1.37929 * 120.11770 * 180.02562 * 14 13 11 16 16 C 1.38508 * 120.70421 * 359.71747 * 15 14 13 17 17 C 1.38595 * 120.16612 * 0.54113 * 16 15 14 18 18 N 1.39922 * 120.22180 * 179.73745 * 17 16 15 19 19 N 1.40445 * 126.79699 * 230.99175 * 18 17 16 20 20 C 1.31113 * 106.78823 * 180.12653 * 19 18 17 21 21 O 1.35836 * 125.55941 * 179.86127 * 20 19 18 22 22 N 1.33576 * 108.87945 * 359.59298 * 20 19 18 23 23 C 1.30906 * 109.80107 * 0.27099 * 22 20 19 24 24 C 1.50697 * 125.93811 * 180.02562 * 23 22 20 25 25 N 1.46898 * 109.47487 * 84.67184 * 24 23 22 26 26 C 1.39762 * 119.55018 * 359.46735 * 17 16 15 27 27 H 0.97001 * 120.00596 * 0.02562 * 1 2 3 28 28 H 1.08003 * 125.37155 * 359.97271 * 10 9 7 29 29 H 1.08005 * 119.93935 * 359.97438 * 14 13 11 30 30 H 1.08003 * 119.64478 * 180.02562 * 15 14 13 31 31 H 1.08007 * 119.91981 * 180.30916 * 16 15 14 32 32 H 0.96704 * 113.99822 * 269.72002 * 21 20 19 33 33 H 1.08999 * 109.47119 * 204.67696 * 24 23 22 34 34 H 1.09002 * 109.46945 * 324.67375 * 24 23 22 35 35 H 1.00896 * 111.00172 * 180.02562 * 25 24 23 36 36 H 1.00906 * 110.99619 * 303.95799 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3107 0.0000 0.0000 3 14 2.2446 1.6178 0.0000 4 1 2.4922 2.0465 -1.4001 5 1 1.4421 2.6527 0.7000 6 1 3.5422 1.4403 0.7001 7 6 2.0092 -1.2097 0.0005 8 1 3.0893 -1.2097 0.0001 9 6 1.3047 -2.4302 0.0005 10 6 -0.0156 -2.6321 -0.3826 11 7 -0.3269 -3.9445 -0.2400 12 1 -1.1923 -4.3320 -0.4445 13 6 0.7591 -4.6527 0.2369 14 6 0.9494 -5.9966 0.5449 15 6 2.1704 -6.4327 1.0153 16 6 3.2216 -5.5463 1.1821 17 6 3.0532 -4.2027 0.8869 18 7 4.1127 -3.3053 1.0601 19 7 4.0783 -2.0881 1.7600 20 6 5.2782 -1.5670 1.6725 21 8 5.6671 -0.3840 2.2150 22 7 6.0575 -2.3920 0.9680 23 6 5.3690 -3.4407 0.5938 24 6 5.8916 -4.5985 -0.2170 25 7 6.5373 -5.5699 0.6760 26 6 1.8196 -3.7512 0.4096 27 1 -0.4851 0.8400 -0.0004 28 1 -0.6880 -1.8649 -0.7372 29 1 0.1392 -6.6991 0.4160 30 1 2.3098 -7.4773 1.2515 31 1 4.1739 -5.9024 1.5466 32 1 5.5483 0.3757 1.6285 33 1 5.0643 -5.0791 -0.7392 34 1 6.6178 -4.2346 -0.9439 35 1 6.8966 -6.3561 0.1558 36 1 7.2664 -5.1325 1.2194 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168760585.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:28:27 Heat of formation + Delta-G solvation = 122.654061 kcal Electronic energy + Delta-G solvation = -24351.182473 eV Core-core repulsion = 20838.494416 eV Total energy + Delta-G solvation = -3512.688057 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 299.112 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.79092 -39.84145 -37.17542 -36.04314 -34.72963 -33.71827 -32.76578 -30.45318 -29.92755 -28.28072 -27.65687 -25.48672 -24.82092 -22.66537 -21.62254 -20.73472 -20.06538 -19.52477 -18.22409 -17.58091 -16.30578 -16.04235 -15.78798 -15.51766 -14.96812 -14.53311 -14.46059 -14.20636 -14.03330 -13.76533 -13.26170 -12.98961 -12.60461 -12.40210 -11.79925 -11.75017 -11.50038 -11.38071 -11.21641 -11.03247 -10.78226 -10.70302 -10.10703 -9.93996 -9.49615 -9.34506 -9.30563 -8.99934 -8.73354 -8.30294 -7.28919 -6.64626 -6.53367 -4.02806 1.46176 2.28067 2.40661 2.69694 3.05421 3.10803 3.14794 3.16358 3.86689 4.03811 4.11910 4.34449 4.48473 4.68184 4.78937 5.08657 5.44584 5.49866 5.54204 5.77468 5.80984 5.91205 6.11542 6.30329 6.36783 6.56965 6.68531 6.85250 6.91961 7.02187 7.09018 7.15083 7.32636 7.35012 7.61030 7.65566 7.87093 7.89507 8.19043 8.54164 8.55812 8.89168 9.04692 9.11190 10.49030 Molecular weight = 299.11amu Principal moments of inertia in cm(-1) A = 0.011382 B = 0.008897 C = 0.005315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2459.371445 B = 3146.219243 C = 5267.132465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.835 5.835 2 C 0.059 3.941 3 Si 0.913 3.087 4 H -0.275 1.275 5 H -0.279 1.279 6 H -0.270 1.270 7 C -0.401 4.401 8 H 0.068 0.932 9 C 0.030 3.970 10 C -0.076 4.076 11 N -0.585 5.585 12 H 0.398 0.602 13 C 0.089 3.911 14 C -0.133 4.133 15 C -0.111 4.111 16 C -0.163 4.163 17 C 0.173 3.827 18 N -0.281 5.281 19 N -0.248 5.248 20 C 0.368 3.632 21 O -0.444 6.444 22 N -0.552 5.552 23 C 0.283 3.717 24 C 0.145 3.855 25 N -0.840 5.840 26 C -0.113 4.113 27 H 0.272 0.728 28 H 0.180 0.820 29 H 0.109 0.891 30 H 0.120 0.880 31 H 0.133 0.867 32 H 0.401 0.599 33 H 0.100 0.900 34 H 0.063 0.937 35 H 0.350 0.650 36 H 0.349 0.651 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.723 -8.910 -2.359 10.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.465 5.465 2 C -0.151 4.151 3 Si 0.740 3.260 4 H -0.201 1.201 5 H -0.205 1.205 6 H -0.194 1.194 7 C -0.434 4.434 8 H 0.086 0.914 9 C 0.025 3.975 10 C -0.200 4.200 11 N -0.185 5.185 12 H 0.232 0.768 13 C -0.023 4.023 14 C -0.155 4.155 15 C -0.131 4.131 16 C -0.186 4.186 17 C 0.083 3.917 18 N -0.068 5.068 19 N -0.086 5.086 20 C 0.050 3.950 21 O -0.244 6.244 22 N -0.290 5.290 23 C 0.008 3.992 24 C 0.012 3.988 25 N -0.373 5.373 26 C -0.122 4.122 27 H 0.083 0.917 28 H 0.197 0.803 29 H 0.127 0.873 30 H 0.138 0.862 31 H 0.151 0.849 32 H 0.257 0.743 33 H 0.119 0.881 34 H 0.082 0.918 35 H 0.164 0.836 36 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 4.628 -8.500 -1.219 9.755 hybrid contribution 0.590 1.327 -0.931 1.725 sum 5.218 -7.174 -2.151 9.127 Atomic orbital electron populations 1.69635 1.06960 1.27968 1.41985 1.25589 0.94849 1.00445 0.94185 0.86237 0.80040 0.81353 0.78397 1.20118 1.20462 1.19434 1.18603 0.93626 0.88734 1.42456 0.91395 1.17977 0.91716 0.89440 0.98342 1.22805 0.99941 0.82402 1.14865 1.41467 1.10685 1.08364 1.57993 0.76826 1.17956 0.88573 0.92263 1.03507 1.19991 0.97991 0.92181 1.05350 1.20255 0.92031 0.98433 1.02359 1.20751 1.00598 0.90812 1.06446 1.16786 0.85198 0.86804 1.02959 1.46972 1.08263 1.14910 1.36657 1.78811 1.17636 0.95206 1.16954 1.21125 0.86784 0.90533 0.96540 1.84842 1.85004 1.12999 1.41513 1.70073 1.34373 1.04587 1.20003 1.23814 0.82423 0.95807 0.97187 1.20104 0.99485 0.87520 0.91691 1.58591 1.38424 1.11321 1.28916 1.19240 0.91675 0.96519 1.04803 0.91714 0.80312 0.87285 0.86229 0.84936 0.74301 0.88133 0.91848 0.83579 0.83816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -21.90 10.74 55.54 0.60 -21.30 16 2 C 0.06 1.55 5.47 -17.33 -0.09 1.46 16 3 Si 0.91 20.08 29.56 -169.99 -5.02 15.06 16 4 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 5 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 6 H -0.27 -5.71 7.11 56.52 0.40 -5.30 16 7 C -0.40 -10.90 8.22 -38.03 -0.31 -11.22 16 8 H 0.07 1.87 5.73 -52.48 -0.30 1.57 16 9 C 0.03 0.80 6.00 -104.81 -0.63 0.17 16 10 C -0.08 -1.84 10.78 -15.61 -0.17 -2.01 16 11 N -0.58 -11.86 5.99 -9.80 -0.06 -11.92 16 12 H 0.40 6.42 8.96 -40.82 -0.37 6.06 16 13 C 0.09 1.86 7.23 -83.91 -0.61 1.25 16 14 C -0.13 -2.26 10.07 -39.35 -0.40 -2.66 16 15 C -0.11 -1.76 10.00 -39.60 -0.40 -2.15 16 16 C -0.16 -2.91 8.67 -39.35 -0.34 -3.25 16 17 C 0.17 3.74 5.89 -83.46 -0.49 3.24 16 18 N -0.28 -6.13 3.23 -7.92 -0.03 -6.15 16 19 N -0.25 -5.99 9.88 29.19 0.29 -5.70 16 20 C 0.37 8.07 9.40 -91.18 -0.86 7.21 16 21 O -0.44 -8.59 13.66 -19.23 -0.26 -8.85 16 22 N -0.55 -11.15 11.21 -12.01 -0.13 -11.28 16 23 C 0.28 5.34 7.35 -155.39 -1.14 4.20 16 24 C 0.14 1.96 6.45 -4.98 -0.03 1.93 16 25 N -0.84 -9.16 8.79 -11.41 -0.10 -9.27 16 26 C -0.11 -2.69 6.26 -104.77 -0.66 -3.35 16 27 H 0.27 6.65 8.30 -40.82 -0.34 6.31 16 28 H 0.18 4.48 6.28 -52.48 -0.33 4.15 16 29 H 0.11 1.51 8.06 -52.48 -0.42 1.08 16 30 H 0.12 1.48 8.06 -52.48 -0.42 1.06 16 31 H 0.13 2.17 6.97 -52.48 -0.37 1.81 16 32 H 0.40 6.15 9.06 45.56 0.41 6.56 16 33 H 0.10 1.36 7.27 -51.93 -0.38 0.98 16 34 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.35 2.67 9.08 -39.29 -0.36 2.31 16 36 H 0.35 3.81 8.99 -39.29 -0.35 3.46 16 LS Contribution 311.05 15.07 4.69 4.69 Total: -1.00 -32.14 311.05 -8.60 -40.73 By element: Atomic # 1 Polarization: 21.60 SS G_CDS: -2.44 Total: 19.16 kcal Atomic # 6 Polarization: 0.96 SS G_CDS: -6.12 Total: -5.17 kcal Atomic # 7 Polarization: -66.18 SS G_CDS: 0.57 Total: -65.61 kcal Atomic # 8 Polarization: -8.59 SS G_CDS: -0.26 Total: -8.85 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.06 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -32.14 -8.60 -40.73 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168760585.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.386 kcal (2) G-P(sol) polarization free energy of solvation -32.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 131.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.732 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds