Wall clock time and date at job start Tue Mar 31 2020 03:28:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31071 * 1 3 3 Si 1.86806 * 119.99684 * 2 1 4 4 H 1.48501 * 109.46976 * 269.99585 * 3 2 1 5 5 H 1.48495 * 109.47135 * 29.99912 * 3 2 1 6 6 H 1.48504 * 109.46931 * 149.99781 * 3 2 1 7 7 C 1.39691 * 120.00309 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00363 * 179.97438 * 7 2 1 9 9 C 1.40917 * 120.00079 * 0.02562 * 7 2 1 10 10 C 1.38955 * 126.93472 * 20.15547 * 9 7 2 11 11 N 1.35634 * 109.25182 * 180.02562 * 10 9 7 12 12 H 0.96999 * 124.69152 * 180.02562 * 11 10 9 13 13 C 1.38149 * 110.60505 * 0.02562 * 11 10 9 14 14 C 1.39173 * 132.75601 * 180.02562 * 13 11 10 15 15 C 1.37929 * 120.11770 * 180.02562 * 14 13 11 16 16 C 1.38508 * 120.70421 * 359.71747 * 15 14 13 17 17 C 1.38595 * 120.16612 * 0.54113 * 16 15 14 18 18 N 1.39922 * 120.22180 * 179.73745 * 17 16 15 19 19 N 1.40445 * 126.79699 * 230.99175 * 18 17 16 20 20 C 1.31113 * 106.78823 * 180.12653 * 19 18 17 21 21 O 1.35836 * 125.55941 * 179.86127 * 20 19 18 22 22 N 1.33576 * 108.87945 * 359.59298 * 20 19 18 23 23 C 1.30906 * 109.80107 * 0.27099 * 22 20 19 24 24 C 1.50697 * 125.93811 * 180.02562 * 23 22 20 25 25 N 1.46898 * 109.47487 * 84.67184 * 24 23 22 26 26 C 1.39762 * 119.55018 * 359.46735 * 17 16 15 27 27 H 0.97001 * 120.00596 * 0.02562 * 1 2 3 28 28 H 1.08003 * 125.37155 * 359.97271 * 10 9 7 29 29 H 1.08005 * 119.93935 * 359.97438 * 14 13 11 30 30 H 1.08003 * 119.64478 * 180.02562 * 15 14 13 31 31 H 1.08007 * 119.91981 * 180.30916 * 16 15 14 32 32 H 0.96704 * 113.99822 * 269.72002 * 21 20 19 33 33 H 1.08999 * 109.47119 * 204.67696 * 24 23 22 34 34 H 1.09002 * 109.46945 * 324.67375 * 24 23 22 35 35 H 1.00896 * 111.00172 * 180.02562 * 25 24 23 36 36 H 1.00906 * 110.99619 * 303.95799 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3107 0.0000 0.0000 3 14 2.2446 1.6178 0.0000 4 1 2.4922 2.0465 -1.4001 5 1 1.4421 2.6527 0.7000 6 1 3.5422 1.4403 0.7001 7 6 2.0092 -1.2097 0.0005 8 1 3.0893 -1.2097 0.0001 9 6 1.3047 -2.4302 0.0005 10 6 -0.0156 -2.6321 -0.3826 11 7 -0.3269 -3.9445 -0.2400 12 1 -1.1923 -4.3320 -0.4445 13 6 0.7591 -4.6527 0.2369 14 6 0.9494 -5.9966 0.5449 15 6 2.1704 -6.4327 1.0153 16 6 3.2216 -5.5463 1.1821 17 6 3.0532 -4.2027 0.8869 18 7 4.1127 -3.3053 1.0601 19 7 4.0783 -2.0881 1.7600 20 6 5.2782 -1.5670 1.6725 21 8 5.6671 -0.3840 2.2150 22 7 6.0575 -2.3920 0.9680 23 6 5.3690 -3.4407 0.5938 24 6 5.8916 -4.5985 -0.2170 25 7 6.5373 -5.5699 0.6760 26 6 1.8196 -3.7512 0.4096 27 1 -0.4851 0.8400 -0.0004 28 1 -0.6880 -1.8649 -0.7372 29 1 0.1392 -6.6991 0.4160 30 1 2.3098 -7.4773 1.2515 31 1 4.1739 -5.9024 1.5466 32 1 5.5483 0.3757 1.6285 33 1 5.0643 -5.0791 -0.7392 34 1 6.6178 -4.2346 -0.9439 35 1 6.8966 -6.3561 0.1558 36 1 7.2664 -5.1325 1.2194 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168760585.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:28:27 Heat of formation + Delta-G solvation = 95.303006 kcal Electronic energy + Delta-G solvation = -24352.368504 eV Core-core repulsion = 20838.494416 eV Total energy + Delta-G solvation = -3513.874088 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 299.112 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.33208 -41.44231 -38.70384 -37.57512 -35.80546 -35.50367 -34.34551 -31.95078 -31.60539 -29.80481 -29.28242 -26.83815 -26.50806 -24.16368 -23.17713 -22.28813 -21.59412 -21.22599 -19.75357 -19.15416 -18.01555 -17.48309 -17.16430 -17.05218 -16.46305 -16.10104 -15.87152 -15.57609 -15.28199 -15.16414 -14.83519 -14.50236 -14.37697 -13.62553 -13.30208 -13.27694 -13.20382 -12.97824 -12.93000 -12.59655 -12.34340 -12.19361 -11.89215 -11.68110 -11.20658 -11.01233 -10.89293 -10.57655 -9.94610 -9.71196 -8.84968 -8.42383 -8.37719 -5.95768 -0.05164 0.79199 0.90331 1.18810 1.30238 1.32099 1.41287 1.61231 2.22515 2.28252 2.44293 2.80374 2.96117 3.38865 3.54150 3.76641 3.82881 4.20363 4.32440 4.44491 4.51326 4.59889 4.67017 4.83092 4.89979 5.10031 5.13993 5.25551 5.33700 5.56825 5.67217 5.72619 5.87278 5.99535 6.04092 6.24085 6.43695 6.46433 6.61816 6.74144 6.97479 7.14115 7.17094 7.33462 8.60617 Molecular weight = 299.11amu Principal moments of inertia in cm(-1) A = 0.011382 B = 0.008897 C = 0.005315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2459.371445 B = 3146.219243 C = 5267.132465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.014 3.986 3 Si 0.965 3.035 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.263 1.263 7 C -0.424 4.424 8 H 0.054 0.946 9 C -0.016 4.016 10 C -0.080 4.080 11 N -0.578 5.578 12 H 0.417 0.583 13 C 0.083 3.917 14 C -0.122 4.122 15 C -0.092 4.092 16 C -0.144 4.144 17 C 0.144 3.856 18 N -0.290 5.290 19 N -0.303 5.303 20 C 0.363 3.637 21 O -0.447 6.447 22 N -0.561 5.561 23 C 0.289 3.711 24 C 0.150 3.850 25 N -0.836 5.836 26 C -0.154 4.154 27 H 0.274 0.726 28 H 0.164 0.836 29 H 0.152 0.848 30 H 0.172 0.828 31 H 0.151 0.849 32 H 0.416 0.584 33 H 0.104 0.896 34 H 0.083 0.917 35 H 0.372 0.628 36 H 0.351 0.649 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.707 -12.233 -2.362 14.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C -0.193 4.193 3 Si 0.789 3.211 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.187 1.187 7 C -0.457 4.457 8 H 0.072 0.928 9 C -0.022 4.022 10 C -0.206 4.206 11 N -0.182 5.182 12 H 0.254 0.746 13 C -0.028 4.028 14 C -0.143 4.143 15 C -0.112 4.112 16 C -0.167 4.167 17 C 0.053 3.947 18 N -0.077 5.077 19 N -0.141 5.141 20 C 0.044 3.956 21 O -0.249 6.249 22 N -0.299 5.299 23 C 0.014 3.986 24 C 0.017 3.983 25 N -0.371 5.371 26 C -0.163 4.163 27 H 0.084 0.916 28 H 0.181 0.819 29 H 0.170 0.830 30 H 0.190 0.810 31 H 0.168 0.832 32 H 0.274 0.726 33 H 0.122 0.878 34 H 0.101 0.899 35 H 0.189 0.811 36 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 5.611 -11.873 -1.240 13.191 hybrid contribution 0.337 2.087 -0.901 2.298 sum 5.947 -9.786 -2.141 11.650 Atomic orbital electron populations 1.69717 1.07811 1.28526 1.43518 1.26302 0.95734 1.03134 0.94113 0.85438 0.79220 0.77790 0.78696 1.19384 1.19963 1.18707 1.18689 0.93095 0.90049 1.43907 0.92793 1.18363 0.93036 0.90828 0.99971 1.22516 0.99269 0.83943 1.14830 1.41253 1.11735 1.06997 1.58195 0.74621 1.18423 0.87656 0.93572 1.03163 1.20512 0.99734 0.90803 1.03256 1.20892 0.90461 1.00415 0.99446 1.21116 1.02005 0.89340 1.04194 1.17202 0.84935 0.88132 1.04422 1.47002 1.09213 1.14467 1.36986 1.78682 1.19129 0.97138 1.19174 1.21362 0.86709 0.91158 0.96355 1.84786 1.84825 1.13078 1.42219 1.70121 1.34386 1.04969 1.20448 1.24897 0.81407 0.96444 0.95865 1.20244 1.00172 0.86463 0.91446 1.58517 1.38737 1.11209 1.28686 1.19509 0.93818 0.96113 1.06822 0.91587 0.81867 0.83015 0.81036 0.83152 0.72570 0.87802 0.89866 0.81094 0.83630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -47.66 10.74 21.79 0.23 -47.43 16 2 C 0.01 0.74 5.47 85.16 0.47 1.21 16 3 Si 0.96 42.75 29.56 68.60 2.03 44.78 16 4 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 5 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 6 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 7 C -0.42 -24.28 8.22 23.28 0.19 -24.09 16 8 H 0.05 3.14 5.73 -2.91 -0.02 3.12 16 9 C -0.02 -0.91 6.00 -19.99 -0.12 -1.03 16 10 C -0.08 -4.05 10.78 84.28 0.91 -3.14 16 11 N -0.58 -23.35 5.99 -184.93 -1.11 -24.46 16 12 H 0.42 13.04 8.96 -92.71 -0.83 12.21 16 13 C 0.08 3.34 7.23 38.86 0.28 3.62 16 14 C -0.12 -3.56 10.07 22.42 0.23 -3.34 16 15 C -0.09 -2.42 10.00 22.26 0.22 -2.20 16 16 C -0.14 -4.64 8.67 22.42 0.19 -4.44 16 17 C 0.14 6.09 5.89 38.30 0.23 6.32 16 18 N -0.29 -12.73 3.23 -178.98 -0.58 -13.30 16 19 N -0.30 -15.09 9.88 -174.91 -1.73 -16.81 16 20 C 0.36 16.24 9.40 180.54 1.70 17.93 16 21 O -0.45 -17.63 13.66 -91.71 -1.25 -18.88 16 22 N -0.56 -22.61 11.21 -304.02 -3.41 -26.02 16 23 C 0.29 10.71 7.35 138.12 1.02 11.73 16 24 C 0.15 3.70 6.45 85.56 0.55 4.25 16 25 N -0.84 -15.49 8.79 -190.01 -1.67 -17.16 16 26 C -0.15 -7.38 6.26 -19.96 -0.13 -7.51 16 27 H 0.27 14.06 8.30 -92.71 -0.77 13.29 16 28 H 0.16 8.68 6.28 -2.91 -0.02 8.67 16 29 H 0.15 3.21 8.06 -2.91 -0.02 3.19 16 30 H 0.17 2.85 8.06 -2.91 -0.02 2.83 16 31 H 0.15 4.29 6.97 -2.91 -0.02 4.27 16 32 H 0.42 13.02 9.06 -74.05 -0.67 12.35 16 33 H 0.10 2.52 7.27 -2.39 -0.02 2.51 16 34 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 35 H 0.37 4.18 9.08 -89.70 -0.81 3.37 16 36 H 0.35 6.67 8.99 -89.69 -0.81 5.87 16 Total: -1.00 -75.17 311.05 -3.66 -78.82 By element: Atomic # 1 Polarization: 43.06 SS G_CDS: -1.91 Total: 41.15 kcal Atomic # 6 Polarization: -6.42 SS G_CDS: 5.74 Total: -0.68 kcal Atomic # 7 Polarization: -136.93 SS G_CDS: -8.26 Total: -145.18 kcal Atomic # 8 Polarization: -17.63 SS G_CDS: -1.25 Total: -18.88 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.78 kcal Total: -75.17 -3.66 -78.82 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168760585.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.127 kcal (2) G-P(sol) polarization free energy of solvation -75.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.824 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds