Wall clock time and date at job start Tue Mar 31 2020 03:26:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36883 * 126.39324 * 2 1 4 4 C 1.34672 * 106.81389 * 180.25093 * 3 2 1 5 5 N 1.34123 * 108.02297 * 359.74580 * 4 3 2 6 6 C 1.30498 * 109.25552 * 359.97438 * 5 4 3 7 7 S 1.76202 * 125.65219 * 180.02562 * 6 5 4 8 8 O 1.42100 * 106.40073 * 336.48463 * 7 6 5 9 9 O 1.42099 * 106.40442 * 203.56418 * 7 6 5 10 10 N 1.65602 * 107.21926 * 90.02282 * 7 6 5 11 11 C 1.46922 * 120.62914 * 90.00048 * 10 7 6 12 12 C 1.53196 * 108.77606 * 233.58926 * 11 10 7 13 13 C 1.53037 * 109.31040 * 305.36550 * 12 11 10 14 14 C 1.53039 * 109.54101 * 61.36876 * 13 12 11 15 15 H 1.08993 * 109.52527 * 58.59948 * 14 13 12 16 16 C 1.50699 * 109.50148 * 178.68557 * 14 13 12 17 17 H 1.07994 * 120.00218 * 119.83346 * 16 14 13 18 18 C 1.37885 * 119.99346 * 299.83730 * 16 14 13 19 19 N 1.31510 * 120.00257 * 359.97438 * 18 16 14 20 20 Si 1.86800 * 119.99563 * 180.02562 * 18 16 14 21 21 H 1.48496 * 109.47333 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47367 * 119.99898 * 20 18 16 23 23 H 1.48496 * 109.47003 * 239.99661 * 20 18 16 24 24 C 1.46931 * 120.63040 * 269.98453 * 10 7 6 25 25 H 1.09000 * 109.47197 * 270.18632 * 1 2 3 26 26 H 1.08995 * 109.47071 * 30.18821 * 1 2 3 27 27 H 1.09007 * 109.46334 * 150.18753 * 1 2 3 28 28 H 1.07997 * 126.59529 * 359.97438 * 3 2 1 29 29 H 1.08000 * 125.98590 * 179.72253 * 4 3 2 30 30 H 1.08999 * 109.58543 * 113.80014 * 11 10 7 31 31 H 1.08996 * 109.58946 * 353.37545 * 11 10 7 32 32 H 1.08999 * 109.50112 * 65.32084 * 12 11 10 33 33 H 1.09004 * 109.49641 * 185.41325 * 12 11 10 34 34 H 1.09000 * 109.46060 * 181.39134 * 13 12 11 35 35 H 1.09006 * 109.46385 * 301.34352 * 13 12 11 36 36 H 0.97001 * 120.00123 * 179.97438 * 19 18 16 37 37 H 1.09000 * 109.57916 * 246.19493 * 24 10 7 38 38 H 1.08997 * 109.58813 * 6.62095 * 24 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2772 1.1019 0.0000 4 6 3.5460 0.6506 -0.0056 5 7 3.5096 -0.6902 -0.0033 6 6 2.2664 -1.0869 0.0041 7 16 1.7234 -2.7631 0.0103 8 8 2.7859 -3.5312 -0.5377 9 8 0.4081 -2.7609 -0.5277 10 7 1.5801 -3.2261 1.5938 11 6 0.3126 -3.0458 2.3147 12 6 0.5858 -2.2661 3.6048 13 6 1.6704 -2.9849 4.4105 14 6 2.9641 -3.0371 3.5947 15 1 3.2798 -2.0237 3.3472 16 6 4.0405 -3.7164 4.4014 17 1 4.5033 -4.6196 4.0322 18 6 4.4345 -3.1847 5.6111 19 7 3.8712 -2.0846 6.0605 20 14 5.7693 -4.0263 6.6108 21 1 6.2382 -5.2372 5.8904 22 1 6.9075 -3.0920 6.8026 23 1 5.2229 -4.4191 7.9346 24 6 2.7179 -3.8255 2.3044 25 1 -0.3633 0.0033 1.0277 26 1 -0.3633 0.8883 -0.5167 27 1 -0.3632 -0.8918 -0.5110 28 1 1.9612 2.1346 -0.0004 29 1 4.4368 1.2613 -0.0114 30 1 -0.1105 -4.0201 2.5591 31 1 -0.3860 -2.4876 1.6915 32 1 0.9233 -1.2597 3.3573 33 1 -0.3284 -2.2087 4.1957 34 1 1.8492 -2.4457 5.3407 35 1 1.3424 -3.9996 4.6366 36 1 4.1481 -1.7108 6.9117 37 1 2.4908 -4.8633 2.5480 38 1 3.6063 -3.7818 1.6744 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001193582463.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:26:10 Heat of formation + Delta-G solvation = -10.604344 kcal Electronic energy + Delta-G solvation = -23627.859904 eV Core-core repulsion = 20212.544529 eV Total energy + Delta-G solvation = -3415.315375 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 299.109 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.04770 -37.81230 -37.27155 -35.76440 -34.05395 -33.34871 -31.19465 -30.14912 -29.83155 -27.13952 -25.14842 -23.72041 -22.31698 -21.77706 -21.50104 -19.53446 -18.54946 -17.89205 -17.19006 -16.24017 -15.80230 -15.79252 -15.61540 -14.66677 -14.39104 -14.01730 -13.65271 -13.60611 -13.34629 -13.07533 -13.03141 -12.81808 -12.77658 -12.23863 -11.95592 -11.74403 -11.50277 -11.39704 -10.99620 -10.88680 -10.70650 -10.31170 -10.13229 -9.96704 -9.90096 -9.73310 -9.46192 -8.86487 -8.85323 -8.49136 -8.22417 -6.01651 -4.08126 0.44688 1.57210 2.59248 2.86147 3.23192 3.29774 3.38217 3.43075 3.81912 4.29148 4.43376 4.63014 4.82294 5.00457 5.07898 5.23026 5.29204 5.39886 5.49436 5.56506 5.67733 5.89672 5.97909 6.15968 6.28007 6.44059 6.53221 6.61408 6.62602 6.77120 6.80257 6.94450 7.14645 7.39327 7.70267 7.78790 7.93328 8.07116 8.38691 8.95598 9.56832 11.04045 Molecular weight = 299.11amu Principal moments of inertia in cm(-1) A = 0.018590 B = 0.005625 C = 0.005322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.817319 B = 4976.465969 C = 5259.507687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.407 5.407 3 C -0.015 4.015 4 C -0.032 4.032 5 N -0.388 5.388 6 C -0.346 4.346 7 S 2.719 3.281 8 O -0.928 6.928 9 O -0.963 6.963 10 N -0.980 5.980 11 C 0.123 3.877 12 C -0.135 4.135 13 C -0.110 4.110 14 C 0.040 3.960 15 H 0.030 0.970 16 C -0.513 4.513 17 H 0.060 0.940 18 C 0.063 3.937 19 N -0.889 5.889 20 Si 0.892 3.108 21 H -0.272 1.272 22 H -0.285 1.285 23 H -0.285 1.285 24 C 0.124 3.876 25 H 0.087 0.913 26 H 0.093 0.907 27 H 0.123 0.877 28 H 0.184 0.816 29 H 0.180 0.820 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.052 0.948 33 H 0.057 0.943 34 H 0.094 0.906 35 H 0.038 0.962 36 H 0.259 0.741 37 H 0.068 0.932 38 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.774 5.853 -9.497 14.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 N -0.088 5.088 3 C -0.154 4.154 4 C -0.185 4.185 5 N -0.108 5.108 6 C -0.683 4.683 7 S 2.800 3.200 8 O -0.918 6.918 9 O -0.952 6.952 10 N -0.821 5.821 11 C -0.002 4.002 12 C -0.174 4.174 13 C -0.148 4.148 14 C 0.020 3.980 15 H 0.049 0.951 16 C -0.552 4.552 17 H 0.078 0.922 18 C -0.138 4.138 19 N -0.528 5.528 20 Si 0.720 3.280 21 H -0.196 1.196 22 H -0.211 1.211 23 H -0.211 1.211 24 C 0.000 4.000 25 H 0.106 0.894 26 H 0.112 0.888 27 H 0.141 0.859 28 H 0.201 0.799 29 H 0.197 0.803 30 H 0.092 0.908 31 H 0.090 0.910 32 H 0.071 0.929 33 H 0.076 0.924 34 H 0.113 0.887 35 H 0.056 0.944 36 H 0.069 0.931 37 H 0.086 0.914 38 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -9.436 4.918 -10.110 14.678 hybrid contribution 0.312 1.241 1.074 1.671 sum -9.123 6.159 -9.036 14.241 Atomic orbital electron populations 1.22796 0.75442 1.07372 1.05203 1.45116 1.07808 1.05541 1.50337 1.23197 0.91645 0.93055 1.07463 1.22673 0.96852 0.91219 1.07797 1.70228 1.17149 1.12419 1.10966 1.37301 0.93442 1.15995 1.21573 1.01657 0.73163 0.71918 0.73216 1.93605 1.56589 1.65359 1.76207 1.93483 1.37714 1.86434 1.77617 1.57673 1.20299 1.73799 1.30358 1.21501 0.83376 1.01119 0.94248 1.22015 1.00208 0.99341 0.95813 1.21585 0.93624 0.98510 1.01070 1.18973 0.93437 0.95963 0.89656 0.95148 1.21139 1.19421 1.10572 1.04018 0.92206 1.24932 0.96440 0.94851 0.97583 1.69883 1.42194 1.20327 1.20436 0.86532 0.81828 0.79675 0.79948 1.19631 1.21082 1.21132 1.21963 0.85050 0.97240 0.95697 0.89447 0.88825 0.85867 0.79909 0.80303 0.90768 0.90967 0.92895 0.92432 0.88733 0.94355 0.93118 0.91367 0.89965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.87 59.85 0.65 0.98 16 2 N -0.41 -5.70 3.15 -124.99 -0.39 -6.09 16 3 C -0.01 -0.19 11.58 -16.56 -0.19 -0.38 16 4 C -0.03 -0.48 11.87 -17.81 -0.21 -0.69 16 5 N -0.39 -7.45 11.25 -13.85 -0.16 -7.61 16 6 C -0.35 -6.08 7.94 -90.38 -0.72 -6.79 16 7 S 2.72 47.90 5.77 -107.50 -0.62 47.28 16 8 O -0.93 -19.19 16.73 -57.17 -0.96 -20.14 16 9 O -0.96 -15.72 13.91 -57.17 -0.80 -16.52 16 10 N -0.98 -17.48 3.29 -113.52 -0.37 -17.85 16 11 C 0.12 1.88 6.38 -3.71 -0.02 1.86 16 12 C -0.13 -2.32 6.08 -26.61 -0.16 -2.48 16 13 C -0.11 -2.40 4.96 -26.69 -0.13 -2.54 16 14 C 0.04 0.95 2.25 -91.65 -0.21 0.74 16 15 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 16 C -0.51 -13.67 8.56 -34.44 -0.29 -13.97 16 17 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 18 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 19 N -0.89 -24.73 11.32 55.43 0.63 -24.10 16 20 Si 0.89 21.01 29.54 -169.99 -5.02 15.99 16 21 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 22 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 23 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 24 C 0.12 2.57 5.60 -3.71 -0.02 2.55 16 25 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.12 1.32 5.44 -51.92 -0.28 1.04 16 28 H 0.18 1.43 8.06 -52.49 -0.42 1.01 16 29 H 0.18 2.15 8.06 -52.49 -0.42 1.73 16 30 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.07 0.91 7.13 -51.93 -0.37 0.54 16 32 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.09 2.36 6.05 -51.93 -0.31 2.05 16 35 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 37 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 38 H 0.08 1.77 7.13 -51.93 -0.37 1.40 16 LS Contribution 320.73 15.07 4.83 4.83 Total: -1.00 -33.15 320.73 -9.37 -42.52 By element: Atomic # 1 Polarization: 5.89 SS G_CDS: -5.11 Total: 0.78 kcal Atomic # 6 Polarization: -17.70 SS G_CDS: -1.40 Total: -19.10 kcal Atomic # 7 Polarization: -55.35 SS G_CDS: -0.30 Total: -55.65 kcal Atomic # 8 Polarization: -34.91 SS G_CDS: -1.75 Total: -36.66 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Atomic # 16 Polarization: 47.90 SS G_CDS: -0.62 Total: 47.28 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -33.15 -9.37 -42.52 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193582463.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.914 kcal (2) G-P(sol) polarization free energy of solvation -33.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds