Wall clock time and date at job start Tue Mar 31 2020 03:26:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36883 * 126.39324 * 2 1 4 4 C 1.34672 * 106.81389 * 180.25093 * 3 2 1 5 5 N 1.34123 * 108.02297 * 359.74580 * 4 3 2 6 6 C 1.30498 * 109.25552 * 359.97438 * 5 4 3 7 7 S 1.76202 * 125.65219 * 180.02562 * 6 5 4 8 8 O 1.42100 * 106.40073 * 336.48463 * 7 6 5 9 9 O 1.42099 * 106.40442 * 203.56418 * 7 6 5 10 10 N 1.65602 * 107.21926 * 90.02282 * 7 6 5 11 11 C 1.46922 * 120.62914 * 90.00048 * 10 7 6 12 12 C 1.53196 * 108.77606 * 233.58926 * 11 10 7 13 13 C 1.53037 * 109.31040 * 305.36550 * 12 11 10 14 14 C 1.53039 * 109.54101 * 61.36876 * 13 12 11 15 15 H 1.08993 * 109.52527 * 58.59948 * 14 13 12 16 16 C 1.50699 * 109.50148 * 178.68557 * 14 13 12 17 17 H 1.07994 * 120.00218 * 119.83346 * 16 14 13 18 18 C 1.37885 * 119.99346 * 299.83730 * 16 14 13 19 19 N 1.31510 * 120.00257 * 359.97438 * 18 16 14 20 20 Si 1.86800 * 119.99563 * 180.02562 * 18 16 14 21 21 H 1.48496 * 109.47333 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47367 * 119.99898 * 20 18 16 23 23 H 1.48496 * 109.47003 * 239.99661 * 20 18 16 24 24 C 1.46931 * 120.63040 * 269.98453 * 10 7 6 25 25 H 1.09000 * 109.47197 * 270.18632 * 1 2 3 26 26 H 1.08995 * 109.47071 * 30.18821 * 1 2 3 27 27 H 1.09007 * 109.46334 * 150.18753 * 1 2 3 28 28 H 1.07997 * 126.59529 * 359.97438 * 3 2 1 29 29 H 1.08000 * 125.98590 * 179.72253 * 4 3 2 30 30 H 1.08999 * 109.58543 * 113.80014 * 11 10 7 31 31 H 1.08996 * 109.58946 * 353.37545 * 11 10 7 32 32 H 1.08999 * 109.50112 * 65.32084 * 12 11 10 33 33 H 1.09004 * 109.49641 * 185.41325 * 12 11 10 34 34 H 1.09000 * 109.46060 * 181.39134 * 13 12 11 35 35 H 1.09006 * 109.46385 * 301.34352 * 13 12 11 36 36 H 0.97001 * 120.00123 * 179.97438 * 19 18 16 37 37 H 1.09000 * 109.57916 * 246.19493 * 24 10 7 38 38 H 1.08997 * 109.58813 * 6.62095 * 24 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2772 1.1019 0.0000 4 6 3.5460 0.6506 -0.0056 5 7 3.5096 -0.6902 -0.0033 6 6 2.2664 -1.0869 0.0041 7 16 1.7234 -2.7631 0.0103 8 8 2.7859 -3.5312 -0.5377 9 8 0.4081 -2.7609 -0.5277 10 7 1.5801 -3.2261 1.5938 11 6 0.3126 -3.0458 2.3147 12 6 0.5858 -2.2661 3.6048 13 6 1.6704 -2.9849 4.4105 14 6 2.9641 -3.0371 3.5947 15 1 3.2798 -2.0237 3.3472 16 6 4.0405 -3.7164 4.4014 17 1 4.5033 -4.6196 4.0322 18 6 4.4345 -3.1847 5.6111 19 7 3.8712 -2.0846 6.0605 20 14 5.7693 -4.0263 6.6108 21 1 6.2382 -5.2372 5.8904 22 1 6.9075 -3.0920 6.8026 23 1 5.2229 -4.4191 7.9346 24 6 2.7179 -3.8255 2.3044 25 1 -0.3633 0.0033 1.0277 26 1 -0.3633 0.8883 -0.5167 27 1 -0.3632 -0.8918 -0.5110 28 1 1.9612 2.1346 -0.0004 29 1 4.4368 1.2613 -0.0114 30 1 -0.1105 -4.0201 2.5591 31 1 -0.3860 -2.4876 1.6915 32 1 0.9233 -1.2597 3.3573 33 1 -0.3284 -2.2087 4.1957 34 1 1.8492 -2.4457 5.3407 35 1 1.3424 -3.9996 4.6366 36 1 4.1481 -1.7108 6.9117 37 1 2.4908 -4.8633 2.5480 38 1 3.6063 -3.7818 1.6744 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001193582463.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:26:09 Heat of formation + Delta-G solvation = -34.045610 kcal Electronic energy + Delta-G solvation = -23628.876394 eV Core-core repulsion = 20212.544529 eV Total energy + Delta-G solvation = -3416.331865 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 299.109 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.15268 -39.37675 -38.65984 -37.19730 -35.23995 -35.10606 -32.78002 -31.91141 -30.93862 -28.03883 -27.05731 -25.27564 -23.53734 -23.38466 -22.58569 -21.13704 -19.93032 -19.19884 -18.54906 -18.13912 -17.15335 -16.93112 -16.81843 -16.54814 -15.59682 -15.30606 -15.23170 -14.88164 -14.63050 -14.49375 -14.39668 -14.07675 -13.97719 -13.79182 -13.47055 -13.13007 -12.94962 -12.83756 -12.70382 -12.67468 -12.52742 -11.90494 -11.81712 -11.62895 -11.30367 -11.14015 -10.82414 -10.77577 -10.42434 -10.01476 -9.83073 -8.07767 -6.21287 -0.89814 0.44423 1.40979 1.43867 1.54498 1.57612 1.70742 1.95252 2.44782 2.48893 3.06337 3.19668 3.73885 3.80598 3.87070 4.20516 4.28286 4.31875 4.32765 4.46208 4.52730 4.58213 4.70481 4.75977 4.83809 4.93857 4.97186 5.06685 5.24372 5.32916 5.48490 5.56794 5.64448 5.69809 5.78348 5.99352 6.17286 6.39285 6.66197 6.89581 7.46387 8.96225 Molecular weight = 299.11amu Principal moments of inertia in cm(-1) A = 0.018590 B = 0.005625 C = 0.005322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.817319 B = 4976.465969 C = 5259.507687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.402 5.402 3 C 0.014 3.986 4 C -0.065 4.065 5 N -0.441 5.441 6 C -0.381 4.381 7 S 2.735 3.265 8 O -0.968 6.968 9 O -0.950 6.950 10 N -0.983 5.983 11 C 0.117 3.883 12 C -0.125 4.125 13 C -0.105 4.105 14 C 0.041 3.959 15 H -0.011 1.011 16 C -0.535 4.535 17 H 0.055 0.945 18 C 0.017 3.983 19 N -0.913 5.913 20 Si 0.951 3.049 21 H -0.268 1.268 22 H -0.285 1.285 23 H -0.277 1.277 24 C 0.135 3.865 25 H 0.103 0.897 26 H 0.134 0.866 27 H 0.114 0.886 28 H 0.238 0.762 29 H 0.199 0.801 30 H 0.094 0.906 31 H 0.108 0.892 32 H 0.042 0.958 33 H 0.089 0.911 34 H 0.061 0.939 35 H 0.040 0.960 36 H 0.259 0.741 37 H 0.078 0.922 38 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.905 6.937 -9.765 16.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.083 5.083 3 C -0.127 4.127 4 C -0.218 4.218 5 N -0.162 5.162 6 C -0.719 4.719 7 S 2.819 3.181 8 O -0.958 6.958 9 O -0.940 6.940 10 N -0.823 5.823 11 C -0.007 4.007 12 C -0.164 4.164 13 C -0.143 4.143 14 C 0.022 3.978 15 H 0.008 0.992 16 C -0.574 4.574 17 H 0.074 0.926 18 C -0.182 4.182 19 N -0.553 5.553 20 Si 0.777 3.223 21 H -0.192 1.192 22 H -0.211 1.211 23 H -0.203 1.203 24 C 0.011 3.989 25 H 0.122 0.878 26 H 0.153 0.847 27 H 0.132 0.868 28 H 0.254 0.746 29 H 0.216 0.784 30 H 0.112 0.888 31 H 0.126 0.874 32 H 0.061 0.939 33 H 0.108 0.892 34 H 0.079 0.921 35 H 0.059 0.941 36 H 0.069 0.931 37 H 0.096 0.904 38 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -11.618 5.958 -10.382 16.681 hybrid contribution 0.958 1.045 1.131 1.814 sum -10.660 7.003 -9.251 15.756 Atomic orbital electron populations 1.23186 0.72929 1.09052 1.06801 1.45441 1.09321 1.04847 1.48661 1.24002 0.90413 0.94680 1.03561 1.23263 0.99296 0.90287 1.08976 1.70127 1.18734 1.14862 1.12518 1.36844 0.93884 1.16634 1.24491 1.00968 0.72679 0.71712 0.72742 1.93549 1.58071 1.67124 1.77041 1.93490 1.36685 1.86566 1.77244 1.57616 1.20252 1.74021 1.30407 1.21790 0.82760 1.02505 0.93626 1.21902 0.99678 0.98279 0.96546 1.21392 0.94224 0.98730 0.99965 1.18861 0.94012 0.93762 0.91208 0.99243 1.21531 1.20478 1.10699 1.04659 0.92640 1.25647 0.98402 0.95492 0.98618 1.70014 1.43211 1.21327 1.20702 0.85611 0.79257 0.78720 0.78704 1.19208 1.21123 1.20309 1.21582 0.85844 0.97364 0.94140 0.87814 0.84723 0.86750 0.74603 0.78448 0.88788 0.87440 0.93941 0.89232 0.92096 0.94147 0.93135 0.90359 0.91779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 10.87 127.77 1.39 1.71 16 2 N -0.40 -10.28 3.15 -549.37 -1.73 -12.01 16 3 C 0.01 0.31 11.58 83.09 0.96 1.27 16 4 C -0.06 -1.92 11.87 83.52 0.99 -0.93 16 5 N -0.44 -17.32 11.25 -197.74 -2.22 -19.55 16 6 C -0.38 -13.29 7.94 180.26 1.43 -11.86 16 7 S 2.74 95.90 5.77 -56.49 -0.33 95.58 16 8 O -0.97 -41.37 16.73 -128.00 -2.14 -43.51 16 9 O -0.95 -29.37 13.91 -128.00 -1.78 -31.15 16 10 N -0.98 -34.59 3.29 -513.07 -1.69 -36.28 16 11 C 0.12 3.30 6.38 86.36 0.55 3.85 16 12 C -0.13 -4.10 6.08 30.67 0.19 -3.91 16 13 C -0.10 -4.62 4.96 30.62 0.15 -4.47 16 14 C 0.04 2.06 2.25 -11.46 -0.03 2.03 16 15 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 16 C -0.53 -29.42 8.56 25.60 0.22 -29.20 16 17 H 0.06 3.01 7.74 -2.91 -0.02 2.98 16 18 C 0.02 0.95 5.30 84.66 0.45 1.40 16 19 N -0.91 -52.01 11.32 21.45 0.24 -51.77 16 20 Si 0.95 43.74 29.54 68.60 2.03 45.77 16 21 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 22 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 23 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 24 C 0.14 5.76 5.60 86.36 0.48 6.25 16 25 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 26 H 0.13 1.05 8.14 -2.39 -0.02 1.03 16 27 H 0.11 2.08 5.44 -2.38 -0.01 2.07 16 28 H 0.24 2.41 8.06 -2.91 -0.02 2.38 16 29 H 0.20 4.65 8.06 -2.91 -0.02 4.62 16 30 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 31 H 0.11 2.30 7.13 -2.39 -0.02 2.28 16 32 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 34 H 0.06 3.10 6.05 -2.39 -0.01 3.09 16 35 H 0.04 1.71 8.14 -2.38 -0.02 1.69 16 36 H 0.26 14.07 8.31 -92.71 -0.77 13.30 16 37 H 0.08 3.13 8.14 -2.39 -0.02 3.11 16 38 H 0.06 2.92 7.13 -2.39 -0.02 2.91 16 Total: -1.00 -76.03 320.73 0.23 -75.80 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: 1.06 Total: 10.98 kcal Atomic # 6 Polarization: -40.64 SS G_CDS: 6.79 Total: -33.85 kcal Atomic # 7 Polarization: -114.21 SS G_CDS: -5.40 Total: -119.61 kcal Atomic # 8 Polarization: -70.74 SS G_CDS: -3.92 Total: -74.66 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.77 kcal Atomic # 16 Polarization: 95.90 SS G_CDS: -0.33 Total: 95.58 kcal Total: -76.03 0.23 -75.80 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193582463.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.757 kcal (2) G-P(sol) polarization free energy of solvation -76.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds