Wall clock time and date at job start Tue Mar 31 2020 03:26:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36878 * 126.39367 * 2 1 4 4 C 1.34675 * 106.81495 * 179.84252 * 3 2 1 5 5 N 1.34133 * 108.01597 * 0.42193 * 4 3 2 6 6 C 1.30488 * 109.25872 * 359.73162 * 5 4 3 7 7 S 1.76205 * 125.65045 * 180.02562 * 6 5 4 8 8 O 1.42094 * 106.40338 * 83.76287 * 7 6 5 9 9 O 1.42103 * 106.40314 * 216.68658 * 7 6 5 10 10 N 1.65603 * 107.21712 * 330.22330 * 7 6 5 11 11 C 1.46507 * 119.99843 * 71.43643 * 10 7 6 12 12 C 1.50701 * 110.01514 * 291.68356 * 11 10 7 13 13 H 1.08005 * 119.99668 * 119.26737 * 12 11 10 14 14 C 1.37871 * 120.00419 * 299.26759 * 12 11 10 15 15 N 1.31513 * 119.99803 * 8.15704 * 14 12 11 16 16 Si 1.86799 * 120.00395 * 188.14974 * 14 12 11 17 17 H 1.48502 * 109.46838 * 0.02562 * 16 14 12 18 18 H 1.48502 * 109.47049 * 120.00094 * 16 14 12 19 19 H 1.48497 * 109.47479 * 240.00236 * 16 14 12 20 20 C 1.54265 * 110.03356 * 170.24256 * 11 10 7 21 21 C 1.54886 * 104.19669 * 217.10648 * 20 11 10 22 22 C 1.54886 * 102.74739 * 37.94285 * 21 20 11 23 23 C 1.53873 * 110.02980 * 53.07339 * 11 10 7 24 24 H 1.09000 * 109.47056 * 269.68283 * 1 2 3 25 25 H 1.08999 * 109.46820 * 149.69131 * 1 2 3 26 26 H 1.08994 * 109.47318 * 29.69340 * 1 2 3 27 27 H 1.07999 * 126.59529 * 359.97438 * 3 2 1 28 28 H 1.07994 * 125.99047 * 180.11801 * 4 3 2 29 29 H 0.97000 * 120.00188 * 251.43951 * 10 7 6 30 30 H 0.97001 * 120.00082 * 184.99844 * 15 14 12 31 31 H 1.09001 * 110.48418 * 335.78830 * 20 11 10 32 32 H 1.09001 * 110.48760 * 98.42279 * 20 11 10 33 33 H 1.09000 * 110.75577 * 279.62755 * 21 20 11 34 34 H 1.08997 * 110.75863 * 156.25563 * 21 20 11 35 35 H 1.09005 * 110.48666 * 203.38155 * 22 21 20 36 36 H 1.08999 * 110.48682 * 80.73679 * 22 21 20 37 37 H 1.08998 * 110.03292 * 238.56760 * 23 11 10 38 38 H 1.08994 * 110.03477 * 0.02562 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2772 1.1018 0.0000 4 6 3.5461 0.6505 0.0035 5 7 3.5095 -0.6903 -0.0037 6 6 2.2664 -1.0870 -0.0059 7 16 1.7233 -2.7632 -0.0144 8 8 1.7403 -3.1973 1.3385 9 8 0.5597 -2.8039 -0.8292 10 7 2.8784 -3.6488 -0.8042 11 6 4.1751 -3.8945 -0.1681 12 6 4.9518 -2.6071 -0.0663 13 1 5.2431 -2.2273 0.9019 14 6 5.2906 -1.9140 -1.2090 15 7 4.8027 -2.2856 -2.3723 16 14 6.4425 -0.4472 -1.1048 17 1 6.8495 -0.2367 0.3077 18 1 7.6476 -0.7043 -1.9336 19 1 5.7467 0.7653 -1.6059 20 6 4.9749 -4.9324 -0.9823 21 6 5.7066 -5.7754 0.0914 22 6 4.6512 -5.8819 1.2200 23 6 3.9693 -4.4981 1.2322 24 1 -0.3633 -0.0057 1.0277 25 1 -0.3633 -0.8872 -0.5186 26 1 -0.3633 0.8927 -0.5090 27 1 1.9612 2.1345 -0.0004 28 1 4.4368 1.2611 0.0063 29 1 2.6965 -4.0047 -1.6880 30 1 5.0968 -1.8448 -3.1848 31 1 4.3017 -5.5598 -1.5665 32 1 5.6945 -4.4349 -1.6325 33 1 6.5995 -5.2598 0.4449 34 1 5.9575 -6.7623 -0.2971 35 1 5.1346 -6.0773 2.1773 36 1 3.9258 -6.6627 0.9915 37 1 4.4320 -3.8604 1.9854 38 1 2.9047 -4.6087 1.4384 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001193636713.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:26:13 Heat of formation + Delta-G solvation = 17.820320 kcal Electronic energy + Delta-G solvation = -24591.349800 eV Core-core repulsion = 21177.267011 eV Total energy + Delta-G solvation = -3414.082789 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 299.109 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.38131 -37.73883 -36.30157 -35.18056 -33.65638 -32.62395 -31.47503 -29.15785 -27.50367 -26.86704 -26.63378 -23.83285 -21.66988 -20.96702 -19.92065 -19.15599 -18.20227 -17.22199 -16.50504 -16.23399 -15.53592 -15.14659 -14.74084 -14.63372 -14.36132 -13.87236 -13.80223 -13.17152 -12.68918 -12.64353 -12.56463 -12.37384 -12.00625 -11.47067 -11.41552 -11.30199 -10.90891 -10.77389 -10.66987 -10.34051 -10.19157 -9.95396 -9.77103 -9.56094 -9.37072 -9.25651 -9.09673 -8.95306 -8.25650 -7.96437 -7.80374 -5.94428 -3.87325 1.34912 2.24298 3.11388 3.35011 3.45864 3.51005 3.66913 3.98379 4.45444 4.57454 4.94303 5.15578 5.26741 5.45725 5.47170 5.64049 5.79377 5.81272 5.88906 5.94290 6.05533 6.51972 6.53303 6.57339 6.69364 6.79089 6.84374 7.00777 7.09268 7.23331 7.32815 7.41089 7.44255 7.48585 7.80938 8.04725 8.43405 8.49037 8.58628 9.07588 9.75708 11.10484 Molecular weight = 299.11amu Principal moments of inertia in cm(-1) A = 0.014681 B = 0.010623 C = 0.007156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1906.756106 B = 2635.240684 C = 3911.837467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.422 5.422 3 C -0.033 4.033 4 C -0.061 4.061 5 N -0.307 5.307 6 C -0.328 4.328 7 S 2.713 3.287 8 O -0.960 6.960 9 O -0.996 6.996 10 N -1.052 6.052 11 C 0.290 3.710 12 C -0.480 4.480 13 H 0.065 0.935 14 C 0.112 3.888 15 N -0.874 5.874 16 Si 0.892 3.108 17 H -0.273 1.273 18 H -0.300 1.300 19 H -0.286 1.286 20 C -0.092 4.092 21 C -0.121 4.121 22 C -0.121 4.121 23 C -0.153 4.153 24 H 0.078 0.922 25 H 0.110 0.890 26 H 0.089 0.911 27 H 0.171 0.829 28 H 0.162 0.838 29 H 0.403 0.597 30 H 0.255 0.745 31 H 0.038 0.962 32 H 0.080 0.920 33 H 0.064 0.936 34 H 0.046 0.954 35 H 0.048 0.952 36 H 0.050 0.950 37 H 0.063 0.937 38 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.010 1.705 2.512 5.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 N -0.105 5.105 3 C -0.170 4.170 4 C -0.214 4.214 5 N -0.025 5.025 6 C -0.666 4.666 7 S 2.798 3.202 8 O -0.949 6.949 9 O -0.985 6.985 10 N -0.813 5.813 11 C 0.206 3.794 12 C -0.521 4.521 13 H 0.083 0.917 14 C -0.093 4.093 15 N -0.512 5.512 16 Si 0.722 3.278 17 H -0.197 1.197 18 H -0.228 1.228 19 H -0.213 1.213 20 C -0.132 4.132 21 C -0.159 4.159 22 C -0.159 4.159 23 C -0.192 4.192 24 H 0.097 0.903 25 H 0.129 0.871 26 H 0.107 0.893 27 H 0.188 0.812 28 H 0.179 0.821 29 H 0.237 0.763 30 H 0.065 0.935 31 H 0.057 0.943 32 H 0.098 0.902 33 H 0.083 0.917 34 H 0.064 0.936 35 H 0.067 0.933 36 H 0.069 0.931 37 H 0.082 0.918 38 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -5.375 1.062 2.921 6.209 hybrid contribution 0.406 2.398 -0.775 2.553 sum -4.968 3.460 2.146 6.424 Atomic orbital electron populations 1.22511 0.77040 1.06579 1.04005 1.45140 1.06885 1.05856 1.52620 1.22911 0.91958 0.92397 1.09759 1.22897 0.95926 0.93583 1.08972 1.71943 1.14857 1.08479 1.07202 1.37260 0.93684 1.15706 1.19983 1.01667 0.72601 0.71858 0.74099 1.93507 1.87037 1.78047 1.36349 1.93452 1.48308 1.86705 1.70057 1.56029 1.29769 1.64388 1.31103 1.18658 0.79405 0.94322 0.86975 1.21409 1.33333 1.03936 0.93463 0.91686 1.24686 0.94218 0.95351 0.95093 1.70027 1.41074 1.42288 0.97827 0.86735 0.79530 0.83771 0.77755 1.19735 1.22817 1.21294 1.22344 0.98765 0.95412 0.96715 1.22445 0.98349 0.98308 0.96807 1.22320 0.97736 0.98027 0.97786 1.23186 1.02178 0.95032 0.98775 0.90344 0.87142 0.89259 0.81202 0.82057 0.76292 0.93497 0.94284 0.90158 0.91723 0.93572 0.93303 0.93116 0.91792 0.89563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.58 10.96 59.85 0.66 1.23 16 2 N -0.42 -7.85 3.15 -125.00 -0.39 -8.24 16 3 C -0.03 -0.57 11.58 -16.56 -0.19 -0.77 16 4 C -0.06 -1.26 10.17 -17.81 -0.18 -1.44 16 5 N -0.31 -7.21 4.76 -13.85 -0.07 -7.27 16 6 C -0.33 -7.27 7.76 -90.39 -0.70 -7.97 16 7 S 2.71 58.96 5.61 -107.50 -0.60 58.36 16 8 O -0.96 -21.92 14.16 -57.17 -0.81 -22.73 16 9 O -1.00 -21.56 15.78 -57.17 -0.90 -22.46 16 10 N -1.05 -23.22 4.68 0.51 0.00 -23.22 16 11 C 0.29 6.57 0.61 -131.85 -0.08 6.49 16 12 C -0.48 -11.95 5.09 -34.44 -0.18 -12.13 16 13 H 0.07 1.71 7.29 -52.48 -0.38 1.33 16 14 C 0.11 2.82 3.20 -17.82 -0.06 2.77 16 15 N -0.87 -22.40 11.59 55.43 0.64 -21.76 16 16 Si 0.89 21.05 25.90 -169.99 -4.40 16.64 16 17 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 18 H -0.30 -7.19 7.11 56.52 0.40 -6.79 16 19 H -0.29 -6.66 6.50 56.52 0.37 -6.30 16 20 C -0.09 -1.94 5.57 -25.07 -0.14 -2.07 16 21 C -0.12 -2.22 6.91 -24.74 -0.17 -2.40 16 22 C -0.12 -2.20 6.83 -25.07 -0.17 -2.37 16 23 C -0.15 -3.27 5.24 -25.61 -0.13 -3.41 16 24 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 25 H 0.11 1.68 5.82 -51.93 -0.30 1.38 16 26 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 27 H 0.17 2.13 8.06 -52.49 -0.42 1.70 16 28 H 0.16 3.11 6.45 -52.49 -0.34 2.77 16 29 H 0.40 8.53 8.48 -34.48 -0.29 8.24 16 30 H 0.26 6.50 8.32 -40.82 -0.34 6.16 16 31 H 0.04 0.78 7.85 -51.93 -0.41 0.37 16 32 H 0.08 1.86 6.63 -51.93 -0.34 1.52 16 33 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 36 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 37 H 0.06 1.43 7.37 -51.93 -0.38 1.04 16 38 H 0.09 1.90 5.02 -51.93 -0.26 1.64 16 LS Contribution 300.38 15.07 4.53 4.53 Total: -1.00 -30.07 300.38 -8.19 -38.27 By element: Atomic # 1 Polarization: 14.79 SS G_CDS: -4.84 Total: 9.95 kcal Atomic # 6 Polarization: -20.72 SS G_CDS: -1.35 Total: -22.07 kcal Atomic # 7 Polarization: -60.68 SS G_CDS: 0.18 Total: -60.50 kcal Atomic # 8 Polarization: -43.47 SS G_CDS: -1.71 Total: -45.19 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -4.40 Total: 16.64 kcal Atomic # 16 Polarization: 58.96 SS G_CDS: -0.60 Total: 58.36 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -30.07 -8.19 -38.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193636713.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.086 kcal (2) G-P(sol) polarization free energy of solvation -30.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.265 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds