Wall clock time and date at job start Tue Mar 31 2020 03:26:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36878 * 126.39367 * 2 1 4 4 C 1.34675 * 106.81495 * 179.84252 * 3 2 1 5 5 N 1.34133 * 108.01597 * 0.42193 * 4 3 2 6 6 C 1.30488 * 109.25872 * 359.73162 * 5 4 3 7 7 S 1.76205 * 125.65045 * 180.02562 * 6 5 4 8 8 O 1.42094 * 106.40338 * 83.76287 * 7 6 5 9 9 O 1.42103 * 106.40314 * 216.68658 * 7 6 5 10 10 N 1.65603 * 107.21712 * 330.22330 * 7 6 5 11 11 C 1.46507 * 119.99843 * 71.43643 * 10 7 6 12 12 C 1.50701 * 110.01514 * 291.68356 * 11 10 7 13 13 H 1.08005 * 119.99668 * 119.26737 * 12 11 10 14 14 C 1.37871 * 120.00419 * 299.26759 * 12 11 10 15 15 N 1.31513 * 119.99803 * 8.15704 * 14 12 11 16 16 Si 1.86799 * 120.00395 * 188.14974 * 14 12 11 17 17 H 1.48502 * 109.46838 * 0.02562 * 16 14 12 18 18 H 1.48502 * 109.47049 * 120.00094 * 16 14 12 19 19 H 1.48497 * 109.47479 * 240.00236 * 16 14 12 20 20 C 1.54265 * 110.03356 * 170.24256 * 11 10 7 21 21 C 1.54886 * 104.19669 * 217.10648 * 20 11 10 22 22 C 1.54886 * 102.74739 * 37.94285 * 21 20 11 23 23 C 1.53873 * 110.02980 * 53.07339 * 11 10 7 24 24 H 1.09000 * 109.47056 * 269.68283 * 1 2 3 25 25 H 1.08999 * 109.46820 * 149.69131 * 1 2 3 26 26 H 1.08994 * 109.47318 * 29.69340 * 1 2 3 27 27 H 1.07999 * 126.59529 * 359.97438 * 3 2 1 28 28 H 1.07994 * 125.99047 * 180.11801 * 4 3 2 29 29 H 0.97000 * 120.00188 * 251.43951 * 10 7 6 30 30 H 0.97001 * 120.00082 * 184.99844 * 15 14 12 31 31 H 1.09001 * 110.48418 * 335.78830 * 20 11 10 32 32 H 1.09001 * 110.48760 * 98.42279 * 20 11 10 33 33 H 1.09000 * 110.75577 * 279.62755 * 21 20 11 34 34 H 1.08997 * 110.75863 * 156.25563 * 21 20 11 35 35 H 1.09005 * 110.48666 * 203.38155 * 22 21 20 36 36 H 1.08999 * 110.48682 * 80.73679 * 22 21 20 37 37 H 1.08998 * 110.03292 * 238.56760 * 23 11 10 38 38 H 1.08994 * 110.03477 * 0.02562 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2772 1.1018 0.0000 4 6 3.5461 0.6505 0.0035 5 7 3.5095 -0.6903 -0.0037 6 6 2.2664 -1.0870 -0.0059 7 16 1.7233 -2.7632 -0.0144 8 8 1.7403 -3.1973 1.3385 9 8 0.5597 -2.8039 -0.8292 10 7 2.8784 -3.6488 -0.8042 11 6 4.1751 -3.8945 -0.1681 12 6 4.9518 -2.6071 -0.0663 13 1 5.2431 -2.2273 0.9019 14 6 5.2906 -1.9140 -1.2090 15 7 4.8027 -2.2856 -2.3723 16 14 6.4425 -0.4472 -1.1048 17 1 6.8495 -0.2367 0.3077 18 1 7.6476 -0.7043 -1.9336 19 1 5.7467 0.7653 -1.6059 20 6 4.9749 -4.9324 -0.9823 21 6 5.7066 -5.7754 0.0914 22 6 4.6512 -5.8819 1.2200 23 6 3.9693 -4.4981 1.2322 24 1 -0.3633 -0.0057 1.0277 25 1 -0.3633 -0.8872 -0.5186 26 1 -0.3633 0.8927 -0.5090 27 1 1.9612 2.1345 -0.0004 28 1 4.4368 1.2611 0.0063 29 1 2.6965 -4.0047 -1.6880 30 1 5.0968 -1.8448 -3.1848 31 1 4.3017 -5.5598 -1.5665 32 1 5.6945 -4.4349 -1.6325 33 1 6.5995 -5.2598 0.4449 34 1 5.9575 -6.7623 -0.2971 35 1 5.1346 -6.0773 2.1773 36 1 3.9258 -6.6627 0.9915 37 1 4.4320 -3.8604 1.9854 38 1 2.9047 -4.6087 1.4384 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001193636713.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:26:13 Heat of formation + Delta-G solvation = -2.901860 kcal Electronic energy + Delta-G solvation = -24592.248381 eV Core-core repulsion = 21177.267011 eV Total energy + Delta-G solvation = -3414.981370 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 299.109 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.86841 -39.43162 -38.03275 -36.93140 -35.13155 -34.31122 -33.28855 -30.65911 -29.14459 -28.61595 -27.91591 -25.62098 -23.24823 -22.42752 -21.47608 -20.89378 -19.85821 -18.74204 -18.34698 -17.95098 -17.06056 -16.67711 -16.50809 -16.30657 -15.98300 -15.54354 -15.26678 -14.60528 -14.39932 -14.09518 -13.98289 -13.85994 -13.61990 -13.24554 -13.10117 -12.97810 -12.60215 -12.54694 -12.47255 -12.17437 -11.93023 -11.51540 -11.44466 -11.18102 -11.10137 -10.95398 -10.77015 -10.49966 -9.85359 -9.67355 -9.61520 -7.87158 -5.80966 -0.32862 0.76950 1.44656 1.50526 1.59433 1.78565 2.06422 2.30927 2.66337 2.81936 3.55543 3.68573 3.89181 3.99851 4.22544 4.26495 4.30826 4.35902 4.44164 4.58621 4.60208 4.94149 4.99825 5.13111 5.14099 5.17486 5.29515 5.42246 5.45383 5.67326 5.71512 5.79405 5.80821 5.97373 6.00190 6.16699 6.59014 6.76772 7.04379 7.10812 7.83340 9.16420 Molecular weight = 299.11amu Principal moments of inertia in cm(-1) A = 0.014681 B = 0.010623 C = 0.007156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1906.756106 B = 2635.240684 C = 3911.837467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.420 5.420 3 C 0.003 3.997 4 C -0.103 4.103 5 N -0.342 5.342 6 C -0.367 4.367 7 S 2.732 3.268 8 O -0.976 6.976 9 O -0.998 6.998 10 N -1.056 6.056 11 C 0.285 3.715 12 C -0.482 4.482 13 H 0.040 0.960 14 C 0.094 3.906 15 N -0.889 5.889 16 Si 0.921 3.079 17 H -0.279 1.279 18 H -0.307 1.307 19 H -0.281 1.281 20 C -0.092 4.092 21 C -0.114 4.114 22 C -0.115 4.115 23 C -0.155 4.155 24 H 0.103 0.897 25 H 0.094 0.906 26 H 0.131 0.869 27 H 0.227 0.773 28 H 0.165 0.835 29 H 0.406 0.594 30 H 0.250 0.750 31 H 0.049 0.951 32 H 0.054 0.946 33 H 0.057 0.943 34 H 0.075 0.925 35 H 0.067 0.933 36 H 0.068 0.932 37 H 0.044 0.956 38 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.220 2.204 2.737 7.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 N -0.103 5.103 3 C -0.136 4.136 4 C -0.256 4.256 5 N -0.060 5.060 6 C -0.706 4.706 7 S 2.817 3.183 8 O -0.965 6.965 9 O -0.987 6.987 10 N -0.817 5.817 11 C 0.201 3.799 12 C -0.523 4.523 13 H 0.059 0.941 14 C -0.109 4.109 15 N -0.529 5.529 16 Si 0.751 3.249 17 H -0.205 1.205 18 H -0.235 1.235 19 H -0.207 1.207 20 C -0.132 4.132 21 C -0.153 4.153 22 C -0.152 4.152 23 C -0.194 4.194 24 H 0.121 0.879 25 H 0.113 0.887 26 H 0.150 0.850 27 H 0.243 0.757 28 H 0.183 0.817 29 H 0.241 0.759 30 H 0.059 0.941 31 H 0.068 0.932 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.094 0.906 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.063 0.937 38 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -6.593 1.529 3.146 7.463 hybrid contribution 0.680 2.364 -0.794 2.584 sum -5.913 3.892 2.352 7.459 Atomic orbital electron populations 1.22906 0.74296 1.07969 1.06088 1.45460 1.08610 1.05160 1.51023 1.23636 0.90537 0.94137 1.05308 1.23184 0.97913 0.93008 1.11541 1.71730 1.16123 1.10329 1.07843 1.36953 0.94186 1.16467 1.22980 1.00825 0.72128 0.71792 0.73535 1.93486 1.87225 1.78728 1.37054 1.93447 1.48275 1.86976 1.70021 1.55722 1.29785 1.64951 1.31210 1.18707 0.79378 0.93847 0.88012 1.21312 1.33847 1.04934 0.92218 0.94131 1.24890 0.94836 0.96152 0.95058 1.70074 1.42007 1.43050 0.97733 0.86295 0.78482 0.83100 0.76975 1.20461 1.23543 1.20717 1.22285 0.98419 0.95422 0.97098 1.22408 0.97756 0.99193 0.95893 1.22308 0.97859 0.96285 0.98775 1.23135 1.01997 0.96787 0.97463 0.87902 0.88721 0.85033 0.75697 0.81738 0.75938 0.94075 0.93246 0.92675 0.92417 0.90595 0.91405 0.91286 0.93688 0.90195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.69 10.96 127.77 1.40 2.09 16 2 N -0.42 -14.63 3.15 -549.38 -1.73 -16.37 16 3 C 0.00 0.09 11.58 83.09 0.96 1.05 16 4 C -0.10 -4.17 10.17 83.52 0.85 -3.32 16 5 N -0.34 -16.08 4.76 -197.74 -0.94 -17.02 16 6 C -0.37 -16.08 7.76 180.27 1.40 -14.68 16 7 S 2.73 118.58 5.61 -56.49 -0.32 118.26 16 8 O -0.98 -44.72 14.16 -128.00 -1.81 -46.54 16 9 O -1.00 -42.62 15.78 -128.00 -2.02 -44.64 16 10 N -1.06 -46.91 4.68 -152.29 -0.71 -47.63 16 11 C 0.29 13.01 0.61 3.58 0.00 13.02 16 12 C -0.48 -24.63 5.09 25.60 0.13 -24.50 16 13 H 0.04 2.23 7.29 -2.91 -0.02 2.21 16 14 C 0.09 4.82 3.20 84.65 0.27 5.09 16 15 N -0.89 -46.36 11.59 21.44 0.25 -46.12 16 16 Si 0.92 43.80 25.90 68.60 1.78 45.58 16 17 H -0.28 -13.41 7.11 99.48 0.71 -12.70 16 18 H -0.31 -14.75 7.11 99.48 0.71 -14.04 16 19 H -0.28 -12.96 6.50 99.48 0.65 -12.32 16 20 C -0.09 -3.84 5.57 31.67 0.18 -3.66 16 21 C -0.11 -4.03 6.91 31.88 0.22 -3.81 16 22 C -0.11 -3.96 6.83 31.67 0.22 -3.75 16 23 C -0.15 -6.63 5.24 31.32 0.16 -6.47 16 24 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 25 H 0.09 2.69 5.82 -2.39 -0.01 2.67 16 26 H 0.13 2.11 8.14 -2.39 -0.02 2.09 16 27 H 0.23 4.35 8.06 -2.91 -0.02 4.33 16 28 H 0.17 6.26 6.45 -2.91 -0.02 6.24 16 29 H 0.41 17.33 8.48 -96.74 -0.82 16.51 16 30 H 0.25 12.95 8.32 -92.71 -0.77 12.18 16 31 H 0.05 1.93 7.85 -2.39 -0.02 1.91 16 32 H 0.05 2.58 6.63 -2.39 -0.02 2.57 16 33 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 34 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 35 H 0.07 2.09 8.14 -2.38 -0.02 2.07 16 36 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 37 H 0.04 2.05 7.37 -2.39 -0.02 2.03 16 38 H 0.08 3.52 5.02 -2.39 -0.01 3.50 16 Total: -1.00 -66.21 300.38 0.49 -65.72 By element: Atomic # 1 Polarization: 27.47 SS G_CDS: 0.21 Total: 27.68 kcal Atomic # 6 Polarization: -44.73 SS G_CDS: 5.79 Total: -38.94 kcal Atomic # 7 Polarization: -123.99 SS G_CDS: -3.14 Total: -127.13 kcal Atomic # 8 Polarization: -87.35 SS G_CDS: -3.83 Total: -91.18 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 1.78 Total: 45.58 kcal Atomic # 16 Polarization: 118.58 SS G_CDS: -0.32 Total: 118.26 kcal Total: -66.21 0.49 -65.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193636713.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.822 kcal (2) G-P(sol) polarization free energy of solvation -66.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds