Wall clock time and date at job start Tue Mar 31 2020 03:30:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 119.99901 * 2 1 4 4 H 1.48505 * 109.46851 * 239.99796 * 3 2 1 5 5 H 1.48501 * 109.47352 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47045 * 120.00257 * 3 2 1 7 7 C 1.37877 * 119.99736 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99655 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00034 * 359.97438 * 7 2 1 10 10 O 1.42896 * 113.28229 * 313.06477 * 9 7 2 11 11 C 1.53498 * 114.20462 * 180.02562 * 9 7 2 12 12 N 1.47064 * 87.98352 * 220.34630 * 11 9 7 13 13 C 1.34780 * 136.05556 * 207.08153 * 12 11 9 14 14 O 1.21623 * 119.99582 * 184.66996 * 13 12 11 15 15 C 1.47095 * 119.99987 * 4.67711 * 13 12 11 16 16 C 1.31551 * 118.10420 * 174.05368 * 15 13 12 17 17 C 1.50097 * 123.79355 * 179.55218 * 16 15 13 18 18 H 1.09001 * 109.36038 * 137.39219 * 17 16 15 19 19 O 1.42903 * 109.35957 * 257.12286 * 17 16 15 20 20 C 1.52939 * 110.26475 * 17.07235 * 17 16 15 21 21 H 1.09000 * 109.45690 * 70.16286 * 20 17 16 22 22 O 1.42901 * 109.77588 * 190.73194 * 20 17 16 23 23 C 1.53367 * 108.54344 * 310.53806 * 20 17 16 24 24 H 1.09001 * 109.63094 * 307.94067 * 23 20 17 25 25 O 1.42895 * 109.63564 * 187.54843 * 23 20 17 26 26 C 1.50091 * 118.10698 * 354.06786 * 15 13 12 27 27 C 1.47069 * 87.88641 * 27.34352 * 12 11 9 28 28 H 0.97002 * 120.00232 * 0.02562 * 1 2 3 29 29 H 0.96697 * 113.99931 * 46.93625 * 10 9 7 30 30 H 1.09000 * 113.47093 * 105.56356 * 11 9 7 31 31 H 1.09006 * 113.46525 * 335.12693 * 11 9 7 32 32 H 1.08004 * 118.10312 * 359.57861 * 16 15 13 33 33 H 0.96702 * 113.99747 * 299.99739 * 19 17 16 34 34 H 0.96704 * 113.99913 * 299.14740 * 22 20 17 35 35 H 0.96696 * 114.00576 * 180.39932 * 25 23 20 36 36 H 1.09007 * 109.35737 * 76.96887 * 26 15 13 37 37 H 1.09007 * 109.36053 * 317.37894 * 26 15 13 38 38 H 1.08993 * 113.47260 * 87.44118 * 27 12 11 39 39 H 1.09008 * 113.46624 * 217.88082 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0017 10 8 0.1927 -2.5395 0.9611 11 6 2.1487 -3.7442 0.0028 12 7 1.2098 -4.3582 -0.9482 13 6 0.8353 -5.6125 -1.2693 14 8 0.0653 -5.7997 -2.1920 15 6 1.3577 -6.7548 -0.5039 16 6 0.8780 -7.9505 -0.7700 17 6 1.3256 -9.2033 -0.0750 18 1 0.4562 -9.8189 0.1557 19 8 2.2076 -9.9311 -0.9320 20 6 2.0604 -8.8566 1.2208 21 1 1.3489 -8.4659 1.9483 22 8 2.6952 -10.0250 1.7441 23 6 3.1186 -7.7904 0.9111 24 1 3.7395 -8.1217 0.0787 25 8 3.9356 -7.5758 2.0637 26 6 2.4071 -6.4889 0.5357 27 6 0.8643 -3.0017 -1.3990 28 1 -0.4850 0.8400 -0.0004 29 1 -0.3709 -1.7538 0.9582 30 1 2.1850 -4.2524 0.9664 31 1 3.1384 -3.5661 -0.4179 32 1 0.1183 -8.0357 -1.5329 33 1 1.8093 -10.1965 -1.7723 34 1 2.0829 -10.7410 1.9621 35 1 4.6235 -6.9077 1.9393 36 1 1.9372 -6.0649 1.4232 37 1 3.1352 -5.7799 0.1411 38 1 1.5152 -2.6279 -2.1893 39 1 -0.1938 -2.8773 -1.6297 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329264349.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:30:33 Heat of formation + Delta-G solvation = -166.763301 kcal Electronic energy + Delta-G solvation = -25266.600556 eV Core-core repulsion = 21369.467998 eV Total energy + Delta-G solvation = -3897.132558 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 299.129 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.44869 -39.28690 -37.58812 -36.77020 -35.82080 -34.52902 -34.10966 -32.24968 -29.88546 -29.46855 -28.37358 -25.54452 -25.31442 -23.56577 -22.35896 -20.59567 -19.30170 -18.60259 -17.73541 -17.57718 -17.19453 -16.73292 -16.34129 -15.55335 -15.36082 -15.02937 -14.90765 -14.40656 -14.24470 -14.07345 -13.62154 -13.37756 -13.18516 -12.97002 -12.74791 -12.51746 -12.21545 -12.15057 -11.62574 -11.52226 -11.09783 -11.03960 -10.88206 -10.58512 -10.44379 -10.32785 -10.19795 -10.05284 -9.81531 -9.34941 -9.15953 -8.81730 -8.48132 -7.94993 -6.45158 -4.56527 1.35891 3.12662 3.19281 3.20257 3.39791 3.52588 3.75046 3.92425 4.13074 4.19976 4.41464 4.60802 4.73868 4.77570 4.89033 4.99502 5.13501 5.30483 5.41082 5.47561 5.49827 5.64436 5.82614 5.94285 6.03300 6.16937 6.23602 6.32202 6.42935 6.68552 6.71935 7.02680 7.31860 7.48643 7.57313 7.61196 7.72145 8.34628 8.46409 8.60279 9.14936 9.40802 10.61634 Molecular weight = 299.13amu Principal moments of inertia in cm(-1) A = 0.025862 B = 0.003864 C = 0.003553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.421298 B = 7244.470195 C = 7878.101361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.073 3.927 3 Si 0.910 3.090 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.538 4.538 8 H 0.073 0.927 9 C 0.242 3.758 10 O -0.572 6.572 11 C 0.092 3.908 12 N -0.625 5.625 13 C 0.564 3.436 14 O -0.561 6.561 15 C -0.113 4.113 16 C -0.144 4.144 17 C 0.109 3.891 18 H 0.076 0.924 19 O -0.544 6.544 20 C 0.121 3.879 21 H 0.077 0.923 22 O -0.540 6.540 23 C 0.119 3.881 24 H 0.072 0.928 25 O -0.553 6.553 26 C -0.125 4.125 27 C 0.078 3.922 28 H 0.275 0.725 29 H 0.396 0.604 30 H 0.074 0.926 31 H 0.089 0.911 32 H 0.132 0.868 33 H 0.379 0.621 34 H 0.373 0.627 35 H 0.379 0.621 36 H 0.099 0.901 37 H 0.093 0.907 38 H 0.081 0.919 39 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.718 -13.602 1.294 14.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.130 4.130 3 Si 0.737 3.263 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.576 4.576 8 H 0.091 0.909 9 C 0.200 3.800 10 O -0.385 6.385 11 C -0.031 4.031 12 N -0.357 5.357 13 C 0.354 3.646 14 O -0.443 6.443 15 C -0.117 4.117 16 C -0.164 4.164 17 C 0.050 3.950 18 H 0.093 0.907 19 O -0.350 6.350 20 C 0.061 3.939 21 H 0.095 0.905 22 O -0.343 6.343 23 C 0.060 3.940 24 H 0.090 0.910 25 O -0.358 6.358 26 C -0.162 4.162 27 C -0.045 4.045 28 H 0.086 0.914 29 H 0.253 0.747 30 H 0.093 0.907 31 H 0.107 0.893 32 H 0.149 0.851 33 H 0.227 0.773 34 H 0.220 0.780 35 H 0.226 0.774 36 H 0.118 0.882 37 H 0.112 0.888 38 H 0.099 0.901 39 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 3.896 -14.321 1.561 14.924 hybrid contribution -0.586 1.554 -1.048 1.964 sum 3.310 -12.767 0.513 13.199 Atomic orbital electron populations 1.69254 1.06263 1.28454 1.49683 1.25089 0.95017 1.00018 0.92883 0.86352 0.79480 0.81489 0.79001 1.19849 1.20948 1.19756 1.21370 0.93836 0.89745 1.52617 0.90913 1.19556 0.85298 0.90926 0.84254 1.86003 1.45275 1.48677 1.58571 1.23655 0.94065 0.93193 0.92147 1.49658 1.41877 1.04728 1.39426 1.17902 0.81698 0.81626 0.83381 1.90734 1.37848 1.84609 1.31075 1.20849 0.98565 0.93996 0.98264 1.23331 0.99475 0.93384 1.00191 1.21362 0.92588 0.90263 0.90813 0.90652 1.86673 1.41004 1.74838 1.32456 1.21884 0.93905 0.86386 0.91698 0.90489 1.86645 1.37139 1.25445 1.85118 1.21720 0.91471 0.92071 0.88757 0.90975 1.86562 1.48850 1.63374 1.37032 1.21581 0.97495 0.98609 0.98491 1.24286 1.00964 0.76923 1.02309 0.91407 0.74745 0.90729 0.89343 0.85075 0.77326 0.78045 0.77377 0.88246 0.88839 0.90115 0.91674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.59 11.01 55.43 0.61 -21.98 16 2 C 0.07 1.78 5.39 -17.82 -0.10 1.68 16 3 Si 0.91 18.99 29.54 -169.99 -5.02 13.97 16 4 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 5 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 6 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 7 C -0.54 -12.98 8.68 -34.44 -0.30 -13.28 16 8 H 0.07 1.67 7.81 -52.49 -0.41 1.26 16 9 C 0.24 5.58 1.59 -91.12 -0.14 5.44 16 10 O -0.57 -14.32 13.55 -35.23 -0.48 -14.80 16 11 C 0.09 1.74 5.62 -8.50 -0.05 1.70 16 12 N -0.63 -12.84 3.68 -186.44 -0.69 -13.53 16 13 C 0.56 11.32 7.95 -12.67 -0.10 11.22 16 14 O -0.56 -12.88 16.75 5.26 0.09 -12.79 16 15 C -0.11 -1.77 5.79 -103.18 -0.60 -2.37 16 16 C -0.14 -1.92 9.00 -36.45 -0.33 -2.25 16 17 C 0.11 1.16 3.53 -28.21 -0.10 1.07 16 18 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 19 O -0.54 -5.87 12.54 -51.36 -0.64 -6.51 16 20 C 0.12 1.46 3.04 -26.57 -0.08 1.38 16 21 H 0.08 0.89 8.12 -51.93 -0.42 0.47 16 22 O -0.54 -6.60 12.78 -60.91 -0.78 -7.38 16 23 C 0.12 1.54 3.23 -26.54 -0.09 1.45 16 24 H 0.07 0.99 7.76 -51.93 -0.40 0.58 16 25 O -0.55 -7.12 13.10 -49.20 -0.64 -7.77 16 26 C -0.12 -1.69 3.70 -28.17 -0.10 -1.79 16 27 C 0.08 1.75 8.05 -8.37 -0.07 1.68 16 28 H 0.28 6.62 8.31 -40.82 -0.34 6.28 16 29 H 0.40 10.19 6.33 45.56 0.29 10.48 16 30 H 0.07 1.31 5.75 -51.93 -0.30 1.01 16 31 H 0.09 1.50 8.10 -51.93 -0.42 1.08 16 32 H 0.13 1.81 7.19 -52.48 -0.38 1.44 16 33 H 0.38 2.57 9.07 45.56 0.41 2.98 16 34 H 0.37 2.80 9.09 45.56 0.41 3.21 16 35 H 0.38 3.29 9.09 45.56 0.41 3.71 16 36 H 0.10 1.41 7.15 -51.93 -0.37 1.04 16 37 H 0.09 1.22 6.19 -51.93 -0.32 0.90 16 38 H 0.08 1.75 8.10 -51.93 -0.42 1.33 16 39 H 0.06 1.58 8.14 -51.92 -0.42 1.16 16 LS Contribution 324.20 15.07 4.89 4.89 Total: -1.00 -32.31 324.20 -6.61 -38.92 By element: Atomic # 1 Polarization: 22.95 SS G_CDS: -1.90 Total: 21.05 kcal Atomic # 6 Polarization: 7.97 SS G_CDS: -2.05 Total: 5.92 kcal Atomic # 7 Polarization: -35.43 SS G_CDS: -0.08 Total: -35.51 kcal Atomic # 8 Polarization: -46.79 SS G_CDS: -2.46 Total: -49.24 kcal Atomic # 14 Polarization: 18.99 SS G_CDS: -5.02 Total: 13.97 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -32.31 -6.61 -38.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329264349.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.840 kcal (2) G-P(sol) polarization free energy of solvation -32.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds