Wall clock time and date at job start Tue Mar 31 2020 03:40:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34231 * 116.99710 * 2 1 4 4 O 1.20827 * 120.00309 * 359.97438 * 3 2 1 5 5 C 1.50699 * 119.99514 * 179.97438 * 3 2 1 6 6 N 1.46508 * 109.47104 * 179.97438 * 5 3 2 7 7 C 1.37095 * 119.99925 * 270.00322 * 6 5 3 8 8 H 1.07999 * 119.99752 * 202.42665 * 7 6 5 9 9 C 1.38945 * 120.00527 * 22.41735 * 7 6 5 10 10 N 1.31417 * 119.99911 * 351.04512 * 9 7 6 11 11 Si 1.86803 * 120.00372 * 171.03697 * 9 7 6 12 12 H 1.48505 * 109.46455 * 60.00779 * 11 9 7 13 13 H 1.48503 * 109.46979 * 180.02562 * 11 9 7 14 14 H 1.48492 * 109.47268 * 300.00624 * 11 9 7 15 15 C 1.34778 * 119.99938 * 89.99586 * 6 5 3 16 16 O 1.21290 * 119.99737 * 355.00101 * 15 6 5 17 17 C 1.50700 * 119.99832 * 175.27693 * 15 6 5 18 18 H 1.08997 * 112.84850 * 51.31685 * 17 15 6 19 19 C 1.53780 * 113.61274 * 182.51705 * 17 15 6 20 20 C 1.53777 * 87.08132 * 139.97751 * 19 17 15 21 21 H 1.09007 * 113.61448 * 89.20243 * 20 19 17 22 22 C 1.50700 * 113.61274 * 220.01397 * 20 19 17 23 23 O 1.20818 * 120.00408 * 0.02562 * 22 20 19 24 24 O 1.34229 * 119.99822 * 180.02562 * 22 20 19 25 25 C 1.45202 * 116.99831 * 180.02562 * 24 22 20 26 26 C 1.53785 * 113.61130 * 280.11982 * 17 15 6 27 27 H 1.09002 * 109.47631 * 300.00809 * 1 2 3 28 28 H 1.09000 * 109.46726 * 60.00826 * 1 2 3 29 29 H 1.08997 * 109.46933 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47697 * 59.99602 * 5 3 2 31 31 H 1.08996 * 109.47070 * 299.99449 * 5 3 2 32 32 H 0.96998 * 120.00081 * 185.01168 * 10 9 7 33 33 H 1.09004 * 113.61648 * 254.52930 * 19 17 15 34 34 H 1.09004 * 113.61607 * 25.34189 * 19 17 15 35 35 H 1.09002 * 109.47336 * 60.00357 * 25 24 22 36 36 H 1.09007 * 109.47225 * 179.97438 * 25 24 22 37 37 H 1.08990 * 109.47380 * 299.99642 * 25 24 22 38 38 H 1.08994 * 113.61434 * 334.56845 * 26 17 15 39 39 H 1.08999 * 113.61270 * 105.47398 * 26 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2749 0.0006 6 7 3.9817 2.6798 -0.0002 7 6 4.1765 3.3364 -1.1878 8 1 4.8076 4.2121 -1.2234 9 6 3.5623 2.8751 -2.3456 10 7 2.9408 1.7172 -2.3432 11 14 3.6196 3.9010 -3.9057 12 1 5.0336 4.1102 -4.3087 13 1 2.8948 3.1925 -4.9909 14 1 2.9759 5.2159 -3.6574 15 6 4.1722 3.3268 1.1667 16 8 3.9129 2.7752 2.2153 17 6 4.7015 4.7378 1.1682 18 1 4.1415 5.4006 0.5086 19 6 4.9201 5.3122 2.5779 20 6 6.2114 5.9458 2.0341 21 1 6.0657 6.9402 1.6120 22 6 7.3673 5.8833 2.9990 23 8 7.2227 5.3683 4.0823 24 8 8.5575 6.3997 2.6549 25 6 9.6257 6.3035 3.6337 26 6 6.2253 4.8243 0.9795 27 1 -0.3634 0.5140 0.8899 28 1 -0.3633 0.5137 -0.8901 29 1 -0.3633 -1.0276 0.0005 30 1 3.9565 0.7805 -0.8891 31 1 3.9556 0.7810 0.8908 32 1 2.5750 1.3614 -3.1680 33 1 4.1665 6.0421 2.8737 34 1 5.0925 4.5502 3.3380 35 1 9.8164 5.2547 3.8615 36 1 10.5307 6.7575 3.2298 37 1 9.3322 6.8255 4.5443 38 1 6.7566 3.9287 1.3016 39 1 6.5239 5.1608 -0.0133 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001337083388.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:40:04 Heat of formation + Delta-G solvation = -169.012484 kcal Electronic energy + Delta-G solvation = -25168.686682 eV Core-core repulsion = 21271.456593 eV Total energy + Delta-G solvation = -3897.230090 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 299.129 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.71181 -39.52079 -38.79621 -37.09290 -36.08380 -35.28631 -34.54451 -31.54897 -29.11286 -28.28886 -26.75486 -25.91472 -25.35115 -24.56939 -22.04652 -20.26357 -19.46711 -18.93315 -17.96761 -17.03915 -16.62520 -16.43496 -16.22761 -15.85235 -15.40337 -15.19377 -14.95251 -14.37186 -14.26898 -13.69617 -13.42548 -13.08578 -12.80906 -12.44546 -12.35123 -12.17874 -12.09499 -11.60817 -11.47978 -11.32854 -11.20067 -10.93753 -10.92896 -10.79487 -10.64164 -10.50818 -10.43944 -10.12908 -10.06962 -9.79281 -9.52060 -8.99549 -8.55520 -7.96878 -6.44505 -4.07604 2.29857 2.78560 3.07738 3.16326 3.17636 3.50255 3.75371 3.97566 4.07895 4.62394 4.63538 4.76159 4.98826 5.04050 5.05519 5.10918 5.21373 5.27617 5.45791 5.72680 5.80344 5.87544 5.97596 5.99497 6.12319 6.15047 6.23986 6.32000 6.35337 6.46305 6.53602 6.81887 6.91915 7.30355 7.51530 7.65349 7.85643 8.23874 8.96357 9.16290 9.35531 9.75176 10.56588 Molecular weight = 299.13amu Principal moments of inertia in cm(-1) A = 0.017189 B = 0.004618 C = 0.003857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.569793 B = 6062.103706 C = 7256.947077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.374 6.374 3 C 0.491 3.509 4 O -0.514 6.514 5 C 0.154 3.846 6 N -0.431 5.431 7 C -0.324 4.324 8 H 0.104 0.896 9 C 0.041 3.959 10 N -0.887 5.887 11 Si 0.932 3.068 12 H -0.273 1.273 13 H -0.284 1.284 14 H -0.272 1.272 15 C 0.480 3.520 16 O -0.596 6.596 17 C -0.109 4.109 18 H 0.115 0.885 19 C -0.098 4.098 20 C -0.115 4.115 21 H 0.124 0.876 22 C 0.471 3.529 23 O -0.504 6.504 24 O -0.360 6.360 25 C 0.034 3.966 26 C -0.097 4.097 27 H 0.049 0.951 28 H 0.053 0.947 29 H 0.085 0.915 30 H 0.141 0.859 31 H 0.073 0.927 32 H 0.273 0.727 33 H 0.075 0.925 34 H 0.106 0.894 35 H 0.061 0.939 36 H 0.098 0.902 37 H 0.060 0.940 38 H 0.086 0.914 39 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.779 4.701 2.574 8.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.291 6.291 3 C 0.333 3.667 4 O -0.400 6.400 5 C 0.029 3.971 6 N -0.150 5.150 7 C -0.451 4.451 8 H 0.122 0.878 9 C -0.162 4.162 10 N -0.527 5.527 11 Si 0.759 3.241 12 H -0.198 1.198 13 H -0.209 1.209 14 H -0.198 1.198 15 C 0.269 3.731 16 O -0.481 6.481 17 C -0.130 4.130 18 H 0.133 0.867 19 C -0.136 4.136 20 C -0.134 4.134 21 H 0.142 0.858 22 C 0.314 3.686 23 O -0.391 6.391 24 O -0.277 6.277 25 C -0.060 4.060 26 C -0.135 4.135 27 H 0.068 0.932 28 H 0.072 0.928 29 H 0.103 0.897 30 H 0.158 0.842 31 H 0.091 0.909 32 H 0.084 0.916 33 H 0.093 0.907 34 H 0.125 0.875 35 H 0.080 0.920 36 H 0.116 0.884 37 H 0.079 0.921 38 H 0.104 0.896 39 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 6.248 4.478 3.276 8.355 hybrid contribution -0.251 0.516 -0.938 1.099 sum 5.997 4.994 2.339 8.146 Atomic orbital electron populations 1.22911 0.79014 1.01724 1.01456 1.86468 1.21401 1.35590 1.85643 1.23988 0.92367 0.80383 0.69963 1.90498 1.66705 1.36481 1.46319 1.20716 0.87016 0.85528 1.03876 1.43345 1.57761 1.08460 1.05400 1.19640 1.28358 1.12120 0.84952 0.87814 1.25284 0.94445 0.96319 1.00169 1.69612 1.37076 1.17437 1.28563 0.85909 0.78357 0.79762 0.80092 1.19828 1.20911 1.19777 1.19913 0.82185 0.87486 0.83532 1.90551 1.56867 1.68782 1.31915 1.22336 0.96140 0.96516 0.98019 0.86720 1.22862 0.93144 0.99952 0.97593 1.22690 0.91564 1.02403 0.96748 0.85763 1.23830 0.83428 0.74092 0.87230 1.90656 1.83585 1.41127 1.23735 1.86542 1.20790 1.73714 1.46642 1.23223 0.88161 1.02679 0.91937 1.22788 0.96102 0.96611 0.98042 0.93241 0.92836 0.89661 0.84212 0.90869 0.91562 0.90652 0.87522 0.91990 0.88355 0.92131 0.89558 0.89378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.78 10.56 101.05 1.07 1.85 16 2 O -0.37 -8.27 10.57 -39.26 -0.41 -8.68 16 3 C 0.49 12.36 5.94 36.01 0.21 12.57 16 4 O -0.51 -14.39 15.98 -18.75 -0.30 -14.69 16 5 C 0.15 3.73 5.21 -5.19 -0.03 3.70 16 6 N -0.43 -10.57 2.11 -116.09 -0.25 -10.82 16 7 C -0.32 -7.73 9.02 -14.94 -0.13 -7.87 16 8 H 0.10 2.24 6.12 -52.49 -0.32 1.92 16 9 C 0.04 0.98 5.41 -17.47 -0.09 0.89 16 10 N -0.89 -22.32 8.24 55.50 0.46 -21.86 16 11 Si 0.93 19.08 29.57 -169.99 -5.03 14.05 16 12 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 13 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 14 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 15 C 0.48 11.38 7.14 -10.99 -0.08 11.31 16 16 O -0.60 -15.72 15.55 5.55 0.09 -15.63 16 17 C -0.11 -2.03 2.77 -90.96 -0.25 -2.28 16 18 H 0.11 2.05 7.74 -51.93 -0.40 1.65 16 19 C -0.10 -1.65 6.71 -25.92 -0.17 -1.83 16 20 C -0.12 -1.62 4.26 -90.87 -0.39 -2.00 16 21 H 0.12 1.39 8.14 -51.93 -0.42 0.96 16 22 C 0.47 7.10 7.49 36.01 0.27 7.37 16 23 O -0.50 -9.03 15.65 -18.74 -0.29 -9.32 16 24 O -0.36 -4.70 10.57 -39.26 -0.41 -5.11 16 25 C 0.03 0.33 10.56 101.05 1.07 1.40 16 26 C -0.10 -1.52 6.74 -25.83 -0.17 -1.69 16 27 H 0.05 0.87 8.13 -51.93 -0.42 0.44 16 28 H 0.05 0.98 8.13 -51.93 -0.42 0.56 16 29 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 30 H 0.14 3.38 6.22 -51.93 -0.32 3.05 16 31 H 0.07 1.69 7.50 -51.93 -0.39 1.30 16 32 H 0.27 6.67 8.32 -40.82 -0.34 6.33 16 33 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.11 2.11 6.76 -51.93 -0.35 1.75 16 35 H 0.06 0.62 8.13 -51.93 -0.42 0.20 16 36 H 0.10 0.66 8.14 -51.92 -0.42 0.23 16 37 H 0.06 0.57 8.13 -51.93 -0.42 0.15 16 38 H 0.09 1.44 8.05 -51.93 -0.42 1.03 16 39 H 0.09 1.21 7.92 -51.93 -0.41 0.80 16 LS Contribution 335.10 15.07 5.05 5.05 Total: -1.00 -32.51 335.10 -4.94 -37.44 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: -5.13 Total: 6.16 kcal Atomic # 6 Polarization: 22.11 SS G_CDS: 1.30 Total: 23.40 kcal Atomic # 7 Polarization: -32.89 SS G_CDS: 0.21 Total: -32.68 kcal Atomic # 8 Polarization: -52.10 SS G_CDS: -1.34 Total: -53.43 kcal Atomic # 14 Polarization: 19.08 SS G_CDS: -5.03 Total: 14.05 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -32.51 -4.94 -37.44 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001337083388.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.568 kcal (2) G-P(sol) polarization free energy of solvation -32.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds