Wall clock time and date at job start Tue Mar 31 2020 03:40:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34231 * 116.99710 * 2 1 4 4 O 1.20827 * 120.00309 * 359.97438 * 3 2 1 5 5 C 1.50699 * 119.99514 * 179.97438 * 3 2 1 6 6 N 1.46508 * 109.47104 * 179.97438 * 5 3 2 7 7 C 1.37095 * 119.99925 * 270.00322 * 6 5 3 8 8 H 1.07999 * 119.99752 * 202.42665 * 7 6 5 9 9 C 1.38945 * 120.00527 * 22.41735 * 7 6 5 10 10 N 1.31417 * 119.99911 * 351.04512 * 9 7 6 11 11 Si 1.86803 * 120.00372 * 171.03697 * 9 7 6 12 12 H 1.48505 * 109.46455 * 60.00779 * 11 9 7 13 13 H 1.48503 * 109.46979 * 180.02562 * 11 9 7 14 14 H 1.48492 * 109.47268 * 300.00624 * 11 9 7 15 15 C 1.34778 * 119.99938 * 89.99586 * 6 5 3 16 16 O 1.21290 * 119.99737 * 355.00101 * 15 6 5 17 17 C 1.50700 * 119.99832 * 175.27693 * 15 6 5 18 18 H 1.08997 * 112.84850 * 51.31685 * 17 15 6 19 19 C 1.53780 * 113.61274 * 182.51705 * 17 15 6 20 20 C 1.53777 * 87.08132 * 139.97751 * 19 17 15 21 21 H 1.09007 * 113.61448 * 89.20243 * 20 19 17 22 22 C 1.50700 * 113.61274 * 220.01397 * 20 19 17 23 23 O 1.20818 * 120.00408 * 0.02562 * 22 20 19 24 24 O 1.34229 * 119.99822 * 180.02562 * 22 20 19 25 25 C 1.45202 * 116.99831 * 180.02562 * 24 22 20 26 26 C 1.53785 * 113.61130 * 280.11982 * 17 15 6 27 27 H 1.09002 * 109.47631 * 300.00809 * 1 2 3 28 28 H 1.09000 * 109.46726 * 60.00826 * 1 2 3 29 29 H 1.08997 * 109.46933 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47697 * 59.99602 * 5 3 2 31 31 H 1.08996 * 109.47070 * 299.99449 * 5 3 2 32 32 H 0.96998 * 120.00081 * 185.01168 * 10 9 7 33 33 H 1.09004 * 113.61648 * 254.52930 * 19 17 15 34 34 H 1.09004 * 113.61607 * 25.34189 * 19 17 15 35 35 H 1.09002 * 109.47336 * 60.00357 * 25 24 22 36 36 H 1.09007 * 109.47225 * 179.97438 * 25 24 22 37 37 H 1.08990 * 109.47380 * 299.99642 * 25 24 22 38 38 H 1.08994 * 113.61434 * 334.56845 * 26 17 15 39 39 H 1.08999 * 113.61270 * 105.47398 * 26 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2749 0.0006 6 7 3.9817 2.6798 -0.0002 7 6 4.1765 3.3364 -1.1878 8 1 4.8076 4.2121 -1.2234 9 6 3.5623 2.8751 -2.3456 10 7 2.9408 1.7172 -2.3432 11 14 3.6196 3.9010 -3.9057 12 1 5.0336 4.1102 -4.3087 13 1 2.8948 3.1925 -4.9909 14 1 2.9759 5.2159 -3.6574 15 6 4.1722 3.3268 1.1667 16 8 3.9129 2.7752 2.2153 17 6 4.7015 4.7378 1.1682 18 1 4.1415 5.4006 0.5086 19 6 4.9201 5.3122 2.5779 20 6 6.2114 5.9458 2.0341 21 1 6.0657 6.9402 1.6120 22 6 7.3673 5.8833 2.9990 23 8 7.2227 5.3683 4.0823 24 8 8.5575 6.3997 2.6549 25 6 9.6257 6.3035 3.6337 26 6 6.2253 4.8243 0.9795 27 1 -0.3634 0.5140 0.8899 28 1 -0.3633 0.5137 -0.8901 29 1 -0.3633 -1.0276 0.0005 30 1 3.9565 0.7805 -0.8891 31 1 3.9556 0.7810 0.8908 32 1 2.5750 1.3614 -3.1680 33 1 4.1665 6.0421 2.8737 34 1 5.0925 4.5502 3.3380 35 1 9.8164 5.2547 3.8615 36 1 10.5307 6.7575 3.2298 37 1 9.3322 6.8255 4.5443 38 1 6.7566 3.9287 1.3016 39 1 6.5239 5.1608 -0.0133 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001337083388.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:40:04 Heat of formation + Delta-G solvation = -188.623235 kcal Electronic energy + Delta-G solvation = -25169.537068 eV Core-core repulsion = 21271.456593 eV Total energy + Delta-G solvation = -3898.080476 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 299.129 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.97860 -41.26878 -40.43491 -38.55353 -37.36879 -37.09374 -36.46654 -33.41107 -30.75053 -29.50636 -28.12825 -27.41561 -26.65289 -26.26404 -23.46612 -21.94050 -21.11154 -20.39091 -19.36442 -18.49833 -18.31818 -18.16214 -17.40223 -17.30510 -17.17655 -16.88822 -16.33400 -16.06485 -15.91143 -15.17064 -14.85314 -14.36665 -14.31268 -14.09718 -13.97426 -13.53234 -13.30722 -13.13135 -12.97080 -12.87553 -12.78542 -12.63357 -12.40143 -12.18479 -12.14144 -12.01551 -11.77918 -11.57650 -11.45756 -11.41248 -11.30462 -10.88790 -10.38581 -9.86419 -8.26784 -5.95024 1.13156 1.45851 1.51292 1.60422 1.72288 1.76358 1.85715 2.23814 2.37108 2.94655 3.17360 3.41147 3.49584 3.82555 3.87625 4.14490 4.27841 4.33926 4.34563 4.34643 4.39283 4.43212 4.62949 4.67798 4.71672 4.72910 4.74344 4.83442 4.96671 5.01884 5.05685 5.36729 5.44908 5.49984 5.66565 5.80061 6.38894 6.73985 7.11570 7.23584 7.51725 7.91592 8.74377 Molecular weight = 299.13amu Principal moments of inertia in cm(-1) A = 0.017189 B = 0.004618 C = 0.003857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.569793 B = 6062.103706 C = 7256.947077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.377 6.377 3 C 0.492 3.508 4 O -0.550 6.550 5 C 0.150 3.850 6 N -0.441 5.441 7 C -0.335 4.335 8 H 0.128 0.872 9 C -0.006 4.006 10 N -0.912 5.912 11 Si 0.997 3.003 12 H -0.252 1.252 13 H -0.293 1.293 14 H -0.273 1.273 15 C 0.464 3.536 16 O -0.634 6.634 17 C -0.113 4.113 18 H 0.128 0.872 19 C -0.101 4.101 20 C -0.094 4.094 21 H 0.167 0.833 22 C 0.473 3.527 23 O -0.541 6.541 24 O -0.357 6.357 25 C 0.026 3.974 26 C -0.089 4.089 27 H 0.049 0.951 28 H 0.045 0.955 29 H 0.133 0.867 30 H 0.138 0.862 31 H 0.073 0.927 32 H 0.270 0.730 33 H 0.092 0.908 34 H 0.071 0.929 35 H 0.055 0.945 36 H 0.135 0.865 37 H 0.062 0.938 38 H 0.067 0.933 39 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.885 6.535 1.315 10.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.293 6.293 3 C 0.336 3.664 4 O -0.439 6.439 5 C 0.025 3.975 6 N -0.159 5.159 7 C -0.462 4.462 8 H 0.145 0.855 9 C -0.206 4.206 10 N -0.553 5.553 11 Si 0.821 3.179 12 H -0.176 1.176 13 H -0.219 1.219 14 H -0.198 1.198 15 C 0.255 3.745 16 O -0.523 6.523 17 C -0.134 4.134 18 H 0.146 0.854 19 C -0.139 4.139 20 C -0.112 4.112 21 H 0.185 0.815 22 C 0.318 3.682 23 O -0.430 6.430 24 O -0.273 6.273 25 C -0.067 4.067 26 C -0.127 4.127 27 H 0.068 0.932 28 H 0.063 0.937 29 H 0.151 0.849 30 H 0.155 0.845 31 H 0.091 0.909 32 H 0.080 0.920 33 H 0.110 0.890 34 H 0.089 0.911 35 H 0.074 0.926 36 H 0.153 0.847 37 H 0.081 0.919 38 H 0.086 0.914 39 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 7.388 6.305 2.007 9.918 hybrid contribution -0.617 -0.160 -0.487 0.802 sum 6.770 6.145 1.520 9.269 Atomic orbital electron populations 1.23276 0.76423 1.04799 1.01063 1.86434 1.23931 1.33980 1.84994 1.24101 0.92695 0.80606 0.69005 1.90459 1.67509 1.37710 1.48207 1.20734 0.86936 0.86257 1.03598 1.43621 1.57608 1.08509 1.06157 1.20155 1.28680 1.12669 0.84662 0.85500 1.26174 0.94111 0.97134 1.03150 1.69725 1.37880 1.18794 1.28872 0.84908 0.79151 0.77737 0.76094 1.17643 1.21938 1.19810 1.20875 0.81568 0.89340 0.82691 1.90513 1.58423 1.70206 1.33116 1.22434 0.98123 0.93233 0.99627 0.85369 1.22775 0.95622 0.99691 0.95845 1.22632 0.89588 1.03698 0.95307 0.81539 1.23964 0.84246 0.73311 0.86703 1.90654 1.84224 1.42756 1.25404 1.86522 1.20561 1.72912 1.47338 1.23554 0.88358 1.02853 0.91977 1.22734 0.93304 0.96683 0.99995 0.93234 0.93661 0.84859 0.84466 0.90884 0.92008 0.88966 0.91056 0.92607 0.84705 0.91874 0.91389 0.86621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.33 10.56 113.37 1.20 2.53 16 2 O -0.38 -16.79 10.57 -51.42 -0.54 -17.33 16 3 C 0.49 25.34 5.94 71.24 0.42 25.76 16 4 O -0.55 -31.46 15.98 21.96 0.35 -31.11 16 5 C 0.15 7.49 5.21 85.63 0.45 7.94 16 6 N -0.44 -21.89 2.11 -639.60 -1.35 -23.24 16 7 C -0.34 -15.75 9.02 84.04 0.76 -14.99 16 8 H 0.13 5.19 6.12 -2.91 -0.02 5.17 16 9 C -0.01 -0.30 5.41 84.92 0.46 0.16 16 10 N -0.91 -46.21 8.24 21.66 0.18 -46.03 16 11 Si 1.00 37.96 29.57 68.60 2.03 39.99 16 12 H -0.25 -8.72 7.11 99.48 0.71 -8.01 16 13 H -0.29 -11.53 7.11 99.48 0.71 -10.82 16 14 H -0.27 -10.35 7.11 99.48 0.71 -9.64 16 15 C 0.46 22.40 7.14 87.66 0.63 23.03 16 16 O -0.63 -34.78 15.55 -3.06 -0.05 -34.83 16 17 C -0.11 -4.10 2.77 -11.01 -0.03 -4.13 16 18 H 0.13 4.30 7.74 -2.39 -0.02 4.28 16 19 C -0.10 -3.36 6.71 31.12 0.21 -3.15 16 20 C -0.09 -2.39 4.26 -10.96 -0.05 -2.44 16 21 H 0.17 2.90 8.14 -2.38 -0.02 2.88 16 22 C 0.47 13.48 7.49 71.24 0.53 14.02 16 23 O -0.54 -19.27 15.65 21.99 0.34 -18.92 16 24 O -0.36 -8.40 10.57 -51.41 -0.54 -8.94 16 25 C 0.03 0.45 10.56 113.37 1.20 1.64 16 26 C -0.09 -2.60 6.74 31.18 0.21 -2.39 16 27 H 0.05 1.72 8.13 -2.39 -0.02 1.70 16 28 H 0.04 1.65 8.13 -2.39 -0.02 1.63 16 29 H 0.13 3.33 8.14 -2.39 -0.02 3.31 16 30 H 0.14 6.84 6.22 -2.39 -0.01 6.82 16 31 H 0.07 3.54 7.50 -2.39 -0.02 3.52 16 32 H 0.27 13.28 8.32 -92.71 -0.77 12.51 16 33 H 0.09 2.68 8.14 -2.39 -0.02 2.66 16 34 H 0.07 2.90 6.76 -2.39 -0.02 2.89 16 35 H 0.06 1.05 8.13 -2.39 -0.02 1.03 16 36 H 0.13 1.34 8.14 -2.38 -0.02 1.32 16 37 H 0.06 1.08 8.13 -2.39 -0.02 1.06 16 38 H 0.07 2.24 8.05 -2.39 -0.02 2.22 16 39 H 0.12 2.74 7.92 -2.39 -0.02 2.72 16 Total: -1.00 -72.68 335.10 7.47 -65.21 By element: Atomic # 1 Polarization: 26.17 SS G_CDS: 1.07 Total: 27.25 kcal Atomic # 6 Polarization: 41.99 SS G_CDS: 5.98 Total: 47.97 kcal Atomic # 7 Polarization: -68.10 SS G_CDS: -1.17 Total: -69.27 kcal Atomic # 8 Polarization: -110.70 SS G_CDS: -0.44 Total: -111.14 kcal Atomic # 14 Polarization: 37.96 SS G_CDS: 2.03 Total: 39.99 kcal Total: -72.68 7.47 -65.21 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001337083388.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.414 kcal (2) G-P(sol) polarization free energy of solvation -72.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -196.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -188.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds