Wall clock time and date at job start Tue Mar 31 2020 03:30:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86802 * 119.99743 * 2 1 4 4 H 1.48499 * 109.47245 * 264.83069 * 3 2 1 5 5 H 1.48501 * 109.47095 * 24.83446 * 3 2 1 6 6 H 1.48501 * 109.47258 * 144.82885 * 3 2 1 7 7 C 1.37876 * 120.00368 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99828 * 3.79106 * 7 2 1 9 9 C 1.50696 * 120.00009 * 183.78946 * 7 2 1 10 10 O 1.42906 * 110.64010 * 61.95175 * 9 7 2 11 11 C 1.55161 * 110.72018 * 185.08817 * 9 7 2 12 12 C 1.54916 * 101.58196 * 153.86547 * 11 9 7 13 13 N 1.47421 * 104.83255 * 322.99586 * 12 11 9 14 14 C 1.34779 * 125.64902 * 203.86551 * 13 12 11 15 15 O 1.21272 * 120.00227 * 180.02562 * 14 13 12 16 16 C 1.50703 * 119.99666 * 0.02562 * 14 13 12 17 17 H 1.09007 * 109.86618 * 303.99524 * 16 14 13 18 18 C 1.54096 * 109.87788 * 65.00307 * 16 14 13 19 19 C 1.54818 * 104.18677 * 121.45533 * 18 16 14 20 20 C 1.54991 * 102.09122 * 20.87641 * 19 18 16 21 21 H 1.09007 * 110.61702 * 81.47714 * 20 19 18 22 22 C 1.50697 * 110.61718 * 204.31805 * 20 19 18 23 23 O 1.20829 * 120.00025 * 115.00649 * 22 20 19 24 24 O 1.34227 * 120.00268 * 295.00010 * 22 20 19 25 25 O 1.43744 * 109.87609 * 182.83480 * 16 14 13 26 26 C 1.47024 * 108.70557 * 24.12631 * 13 12 11 27 27 H 0.96995 * 120.00647 * 359.97438 * 1 2 3 28 28 H 0.96690 * 114.00008 * 61.68737 * 10 9 7 29 29 H 1.09003 * 111.00364 * 35.79697 * 11 9 7 30 30 H 1.08994 * 111.03886 * 271.95523 * 11 9 7 31 31 H 1.08994 * 110.36581 * 204.15366 * 12 11 9 32 32 H 1.09000 * 110.45357 * 81.87738 * 12 11 9 33 33 H 1.09008 * 110.48650 * 240.12637 * 18 16 14 34 34 H 1.08998 * 110.48844 * 2.64114 * 18 16 14 35 35 H 1.09000 * 110.90628 * 139.07655 * 19 18 16 36 36 H 1.08999 * 110.90268 * 262.68335 * 19 18 16 37 37 H 0.96702 * 117.00437 * 180.02562 * 24 22 20 38 38 H 1.08992 * 109.88214 * 118.36423 * 26 13 12 39 39 H 1.09000 * 109.88412 * 239.52799 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.6058 1.9834 -1.3944 5 1 1.3961 2.6817 0.5880 6 1 3.4877 1.4743 0.8065 7 6 2.0045 -1.1940 -0.0005 8 1 1.4663 -2.1283 -0.0628 9 6 3.5090 -1.1954 0.0857 10 8 3.9437 -0.6069 1.3133 11 6 4.0659 -2.6363 -0.0597 12 6 5.4849 -2.3663 -0.6196 13 7 5.3191 -1.2194 -1.5309 14 6 6.1302 -0.9123 -2.5626 15 8 5.8967 0.0600 -3.2489 16 6 7.3271 -1.7771 -2.8634 17 1 7.9617 -1.8515 -1.9801 18 6 6.8634 -3.1817 -3.2954 19 6 7.4674 -3.3624 -4.7094 20 6 8.6187 -2.3248 -4.7057 21 1 9.4983 -2.7291 -4.2045 22 6 8.9581 -1.9037 -6.1123 23 8 8.7740 -0.7620 -6.4622 24 8 9.4651 -2.7970 -6.9764 25 8 8.0718 -1.2173 -3.9581 26 6 4.1261 -0.4626 -1.1242 27 1 -0.4851 0.8399 0.0004 28 1 3.6442 -1.0777 2.1029 29 1 3.4711 -3.2156 -0.7659 30 1 4.1161 -3.1358 0.9077 31 1 5.8487 -3.2360 -1.1665 32 1 6.1712 -2.1127 0.1883 33 1 7.2533 -3.9384 -2.6145 34 1 5.7752 -3.2290 -3.3342 35 1 7.8547 -4.3728 -4.8407 36 1 6.7329 -3.1256 -5.4792 37 1 9.6675 -2.4800 -7.8674 38 1 4.4092 0.5506 -0.8391 39 1 3.4088 -0.4323 -1.9443 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570990158.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:30:18 Heat of formation + Delta-G solvation = -229.828259 kcal Electronic energy + Delta-G solvation = -25278.561262 eV Core-core repulsion = 21378.694002 eV Total energy + Delta-G solvation = -3899.867259 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 299.129 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.98027 -41.18480 -39.94285 -38.78268 -37.17017 -36.26747 -34.56078 -33.44215 -32.28326 -31.16157 -30.13570 -27.41222 -25.78179 -24.35430 -22.95652 -22.32632 -21.55876 -20.79403 -19.31700 -19.17397 -18.57638 -17.88385 -17.75511 -17.37277 -16.80118 -16.68184 -16.37462 -16.19782 -15.85354 -15.36096 -14.96294 -14.79097 -14.67371 -14.50525 -14.07730 -13.72845 -13.55517 -13.29304 -13.08174 -12.94439 -12.76852 -12.71543 -12.59210 -12.34480 -12.10472 -12.02669 -12.00071 -11.67441 -11.31065 -11.04968 -10.90854 -10.65679 -10.25839 -9.72607 -8.44919 -6.55617 1.05038 1.24879 1.32454 1.39392 1.47410 1.52787 1.94320 2.27353 2.89782 2.93002 3.23669 3.48597 3.58474 3.64950 3.79577 3.86569 3.97621 4.15521 4.18787 4.29574 4.34304 4.41760 4.55632 4.62453 4.78728 4.84556 4.92542 4.97155 5.00029 5.10091 5.26211 5.38757 5.45930 5.51495 5.60336 6.04532 6.48171 6.58379 6.89973 7.03668 7.16139 7.33091 8.69024 Molecular weight = 299.13amu Principal moments of inertia in cm(-1) A = 0.027430 B = 0.003918 C = 0.003701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.523332 B = 7144.171629 C = 7563.359574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.047 3.953 3 Si 0.909 3.091 4 H -0.301 1.301 5 H -0.295 1.295 6 H -0.216 1.216 7 C -0.541 4.541 8 H 0.060 0.940 9 C 0.213 3.787 10 O -0.578 6.578 11 C -0.136 4.136 12 C 0.096 3.904 13 N -0.608 5.608 14 C 0.507 3.493 15 O -0.593 6.593 16 C 0.071 3.929 17 H 0.142 0.858 18 C -0.142 4.142 19 C -0.130 4.130 20 C 0.075 3.925 21 H 0.162 0.838 22 C 0.486 3.514 23 O -0.550 6.550 24 O -0.494 6.494 25 O -0.368 6.368 26 C 0.115 3.885 27 H 0.267 0.733 28 H 0.384 0.616 29 H 0.075 0.925 30 H 0.111 0.889 31 H 0.120 0.880 32 H 0.092 0.908 33 H 0.151 0.849 34 H 0.077 0.923 35 H 0.147 0.853 36 H 0.061 0.939 37 H 0.432 0.568 38 H 0.033 0.967 39 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.254 -16.093 -4.771 27.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.154 4.154 3 Si 0.737 3.263 4 H -0.229 1.229 5 H -0.222 1.222 6 H -0.138 1.138 7 C -0.579 4.579 8 H 0.078 0.922 9 C 0.172 3.828 10 O -0.386 6.386 11 C -0.174 4.174 12 C -0.025 4.025 13 N -0.342 5.342 14 C 0.296 3.704 15 O -0.473 6.473 16 C 0.011 3.989 17 H 0.159 0.841 18 C -0.179 4.179 19 C -0.167 4.167 20 C 0.018 3.982 21 H 0.179 0.821 22 C 0.328 3.672 23 O -0.439 6.439 24 O -0.309 6.309 25 O -0.287 6.287 26 C -0.008 4.008 27 H 0.077 0.923 28 H 0.233 0.767 29 H 0.094 0.906 30 H 0.129 0.871 31 H 0.138 0.862 32 H 0.110 0.890 33 H 0.169 0.831 34 H 0.096 0.904 35 H 0.165 0.835 36 H 0.080 0.920 37 H 0.295 0.705 38 H 0.051 0.949 39 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 21.216 -14.662 -5.349 26.339 hybrid contribution -0.895 1.678 -0.633 2.005 sum 20.321 -12.984 -5.982 24.846 Atomic orbital electron populations 1.69994 1.07805 1.28165 1.50694 1.25533 0.94937 1.01995 0.92953 0.86538 0.81314 0.80342 0.78133 1.22902 1.22249 1.13805 1.21580 0.90948 0.93628 1.51707 0.92218 1.19794 0.90645 0.90671 0.81682 1.86448 1.78104 1.57855 1.16224 1.23270 0.94732 0.96126 1.03295 1.22830 0.98435 0.88046 0.93140 1.48665 1.26098 1.29610 1.29871 1.21212 0.84556 0.85647 0.78956 1.90709 1.74429 1.31376 1.50767 1.22883 0.90423 0.92794 0.92799 0.84075 1.23168 1.02920 0.93735 0.98091 1.23154 0.95326 1.01106 0.97149 1.22990 1.01439 0.87169 0.86636 0.82120 1.23292 0.72637 0.82650 0.88575 1.90794 1.50742 1.23282 1.79120 1.84410 1.75080 1.43412 1.27950 1.89095 1.68277 1.29610 1.41747 1.22219 0.86370 0.95023 0.97226 0.92346 0.76696 0.90598 0.87095 0.86182 0.89032 0.83083 0.90437 0.83490 0.92023 0.70496 0.94873 0.93527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.62 13.96 21.45 0.30 -56.32 16 2 C 0.05 2.70 5.47 84.66 0.46 3.16 16 3 Si 0.91 47.19 23.99 68.60 1.65 48.84 16 4 H -0.30 -16.61 7.11 99.48 0.71 -15.91 16 5 H -0.30 -15.16 7.11 99.48 0.71 -14.45 16 6 H -0.22 -10.65 5.41 99.48 0.54 -10.11 16 7 C -0.54 -28.40 8.71 25.60 0.22 -28.18 16 8 H 0.06 3.35 8.03 -2.91 -0.02 3.33 16 9 C 0.21 8.89 0.68 -10.35 -0.01 8.89 16 10 O -0.58 -22.88 10.49 -148.98 -1.56 -24.44 16 11 C -0.14 -3.96 6.22 31.99 0.20 -3.76 16 12 C 0.10 2.23 6.59 86.86 0.57 2.80 16 13 N -0.61 -21.64 3.33 -811.81 -2.70 -24.34 16 14 C 0.51 18.89 7.01 87.66 0.61 19.50 16 15 O -0.59 -29.97 16.85 15.71 0.26 -29.70 16 16 C 0.07 1.66 3.27 30.22 0.10 1.76 16 17 H 0.14 2.16 8.14 -2.38 -0.02 2.14 16 18 C -0.14 -1.89 4.84 31.59 0.15 -1.74 16 19 C -0.13 -1.62 6.57 31.90 0.21 -1.41 16 20 C 0.08 1.30 3.87 30.53 0.12 1.42 16 21 H 0.16 1.26 8.14 -2.38 -0.02 1.24 16 22 C 0.49 10.40 7.70 71.24 0.55 10.95 16 23 O -0.55 -18.41 17.33 28.15 0.49 -17.92 16 24 O -0.49 -5.76 13.42 -51.39 -0.69 -6.45 16 25 O -0.37 -10.83 10.03 -121.19 -1.22 -12.04 16 26 C 0.12 5.27 4.40 86.73 0.38 5.65 16 27 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 28 H 0.38 12.18 9.10 -74.06 -0.67 11.51 16 29 H 0.08 2.30 8.04 -2.39 -0.02 2.28 16 30 H 0.11 2.53 8.14 -2.39 -0.02 2.51 16 31 H 0.12 1.63 5.61 -2.39 -0.01 1.62 16 32 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.15 0.42 7.83 -2.38 -0.02 0.40 16 34 H 0.08 1.36 7.45 -2.39 -0.02 1.34 16 35 H 0.15 0.52 8.14 -2.39 -0.02 0.50 16 36 H 0.06 1.08 8.05 -2.39 -0.02 1.06 16 37 H 0.43 1.84 9.10 -74.06 -0.67 1.17 16 38 H 0.03 1.68 5.68 -2.39 -0.01 1.67 16 39 H 0.05 2.43 7.64 -2.39 -0.02 2.42 16 Total: -1.00 -93.74 319.88 -0.30 -94.04 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: -0.41 Total: 9.30 kcal Atomic # 6 Polarization: 15.47 SS G_CDS: 3.57 Total: 19.04 kcal Atomic # 7 Polarization: -78.26 SS G_CDS: -2.40 Total: -80.66 kcal Atomic # 8 Polarization: -87.85 SS G_CDS: -2.71 Total: -90.57 kcal Atomic # 14 Polarization: 47.19 SS G_CDS: 1.65 Total: 48.84 kcal Total: -93.74 -0.30 -94.04 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570990158.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.784 kcal (2) G-P(sol) polarization free energy of solvation -93.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -229.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -229.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds