Wall clock time and date at job start Tue Mar 31 2020 03:48:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 110.37501 * 2 1 4 4 C 1.54002 * 110.32990 * 237.80802 * 2 1 3 5 5 N 1.47479 * 107.08703 * 242.41603 * 4 2 1 6 6 C 1.34767 * 127.03787 * 154.51810 * 5 4 2 7 7 O 1.21597 * 119.99924 * 359.97438 * 6 5 4 8 8 N 1.34770 * 120.00486 * 179.97438 * 6 5 4 9 9 C 1.46507 * 120.00400 * 179.97438 * 8 6 5 10 10 C 1.50697 * 109.47005 * 179.97438 * 9 8 6 11 11 O 1.21291 * 120.00763 * 359.73081 * 10 9 8 12 12 N 1.34784 * 119.99774 * 180.02562 * 10 9 8 13 13 C 1.37092 * 119.99968 * 179.72830 * 12 10 9 14 14 H 1.08005 * 120.00127 * 359.97438 * 13 12 10 15 15 C 1.38955 * 120.00107 * 179.97438 * 13 12 10 16 16 N 1.31411 * 120.00272 * 179.97438 * 15 13 12 17 17 Si 1.86803 * 119.99631 * 0.02562 * 15 13 12 18 18 H 1.48491 * 109.47423 * 89.99791 * 17 15 13 19 19 H 1.48505 * 109.46968 * 209.99733 * 17 15 13 20 20 H 1.48504 * 109.47133 * 329.99196 * 17 15 13 21 21 C 1.48116 * 105.93115 * 334.77308 * 5 4 2 22 22 C 1.54604 * 103.42162 * 39.02450 * 21 5 4 23 23 H 1.09007 * 110.72913 * 81.24037 * 22 21 5 24 24 C 1.50694 * 110.83445 * 204.44233 * 22 21 5 25 25 O 1.20822 * 119.99829 * 113.56635 * 24 22 21 26 26 O 1.34230 * 120.00111 * 293.56420 * 24 22 21 27 27 H 1.08993 * 109.46933 * 180.74203 * 1 2 3 28 28 H 1.08998 * 109.46783 * 300.73865 * 1 2 3 29 29 H 1.08997 * 109.46820 * 60.73417 * 1 2 3 30 30 H 1.09002 * 109.91247 * 123.04883 * 4 2 1 31 31 H 1.09000 * 109.90808 * 1.78078 * 4 2 1 32 32 H 0.97004 * 120.00047 * 359.97438 * 8 6 5 33 33 H 1.09001 * 109.46566 * 60.00609 * 9 8 6 34 34 H 1.08993 * 109.47390 * 300.00399 * 9 8 6 35 35 H 0.97005 * 119.99846 * 359.72750 * 12 10 9 36 36 H 0.97000 * 119.99725 * 180.02562 * 16 15 13 37 37 H 1.09000 * 110.66145 * 157.50864 * 21 5 4 38 38 H 1.08994 * 110.66939 * 280.62605 * 21 5 4 39 39 H 0.96706 * 117.00119 * 179.97438 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9095 1.0219 0.0000 4 6 2.0650 -0.7694 -1.2221 5 7 2.8277 -1.9224 -0.7084 6 6 3.0614 -3.0885 -1.3423 7 8 2.6221 -3.2709 -2.4613 8 7 3.7821 -4.0525 -0.7359 9 6 4.0357 -5.3204 -1.4248 10 6 4.8584 -6.2184 -0.5374 11 8 5.2037 -5.8352 0.5604 12 7 5.2158 -7.4454 -0.9659 13 6 5.9690 -8.2602 -0.1609 14 1 6.2764 -7.9188 0.8166 15 6 6.3370 -9.5253 -0.6024 16 7 7.0594 -10.3062 0.1691 17 14 5.8059 -10.1154 -2.2934 18 1 6.8350 -9.7381 -3.2951 19 1 5.6499 -11.5921 -2.2759 20 1 4.5103 -9.4851 -2.6532 21 6 3.2789 -1.5390 0.6493 22 6 2.0672 -0.7722 1.2270 23 1 1.3163 -1.4660 1.6054 24 6 2.5029 0.1817 2.3092 25 8 2.4035 1.3738 2.1396 26 8 3.0015 -0.2930 3.4615 27 1 -0.3633 -1.0275 0.0133 28 1 -0.3633 0.5253 0.8833 29 1 -0.3633 0.5024 -0.8965 30 1 2.7181 -0.1244 -1.8100 31 1 1.2334 -1.1174 -1.8348 32 1 4.1329 -3.9069 0.1566 33 1 4.5785 -5.1287 -2.3504 34 1 3.0869 -5.8056 -1.6539 35 1 4.9400 -7.7518 -1.8440 36 1 7.3165 -11.1892 -0.1394 37 1 3.4936 -2.4245 1.2476 38 1 4.1523 -0.8892 0.5952 39 1 3.2679 0.3574 4.1257 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001599856368.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:48:55 Heat of formation + Delta-G solvation = -175.081063 kcal Electronic energy + Delta-G solvation = -24096.384252 eV Core-core repulsion = 20231.183761 eV Total energy + Delta-G solvation = -3865.200492 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 299.136 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.94264 -41.08360 -40.22016 -38.75163 -37.10933 -36.28222 -35.36496 -33.93337 -33.74516 -31.41961 -29.64161 -27.33460 -26.11930 -25.51490 -23.12446 -21.49693 -21.24680 -20.80287 -20.49770 -19.35110 -19.12817 -18.10777 -17.65826 -17.16505 -16.94183 -16.80610 -16.56659 -16.01626 -15.74689 -15.20920 -14.97183 -14.85531 -14.51054 -14.39328 -14.31638 -14.08887 -13.90814 -13.65527 -13.24382 -13.09338 -12.94859 -12.57690 -12.43130 -12.11036 -12.05705 -11.98991 -11.78044 -11.73295 -11.56674 -11.37350 -10.64176 -10.38231 -10.29544 -9.67796 -8.44319 -6.06151 1.07175 1.32320 1.35581 1.37030 1.45770 1.79836 1.99426 2.06925 2.21836 2.69735 3.01926 3.12217 3.21226 3.40784 3.81040 3.99738 4.07495 4.12598 4.35280 4.40252 4.44895 4.45562 4.54101 4.67381 4.71468 4.81415 4.96932 5.01171 5.23570 5.25523 5.36136 5.50241 5.58830 5.88451 5.92078 6.50049 6.79101 6.82660 6.96152 7.29034 7.42631 7.79399 8.72078 Molecular weight = 299.14amu Principal moments of inertia in cm(-1) A = 0.025194 B = 0.002991 C = 0.002726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.125104 B = 9360.499217 C =10267.904838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.086 4.086 3 H 0.105 0.895 4 C 0.126 3.874 5 N -0.637 5.637 6 C 0.729 3.271 7 O -0.622 6.622 8 N -0.725 5.725 9 C 0.137 3.863 10 C 0.446 3.554 11 O -0.613 6.613 12 N -0.577 5.577 13 C -0.330 4.330 14 H 0.064 0.936 15 C -0.008 4.008 16 N -0.926 5.926 17 Si 0.958 3.042 18 H -0.257 1.257 19 H -0.274 1.274 20 H -0.231 1.231 21 C 0.112 3.888 22 C -0.092 4.092 23 H 0.134 0.866 24 C 0.501 3.499 25 O -0.536 6.536 26 O -0.510 6.510 27 H 0.059 0.941 28 H 0.063 0.937 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.409 0.591 33 H 0.103 0.897 34 H 0.104 0.896 35 H 0.392 0.608 36 H 0.281 0.719 37 H 0.095 0.905 38 H 0.088 0.912 39 H 0.431 0.569 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.750 20.411 -1.108 24.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.105 4.105 3 H 0.123 0.877 4 C 0.004 3.996 5 N -0.375 5.375 6 C 0.431 3.569 7 O -0.503 6.503 8 N -0.383 5.383 9 C 0.009 3.991 10 C 0.234 3.766 11 O -0.499 6.499 12 N -0.217 5.217 13 C -0.459 4.459 14 H 0.082 0.918 15 C -0.208 4.208 16 N -0.566 5.566 17 Si 0.778 3.222 18 H -0.182 1.182 19 H -0.199 1.199 20 H -0.155 1.155 21 C -0.011 4.011 22 C -0.112 4.112 23 H 0.151 0.849 24 C 0.344 3.656 25 O -0.426 6.426 26 O -0.324 6.324 27 H 0.078 0.922 28 H 0.082 0.918 29 H 0.093 0.907 30 H 0.094 0.906 31 H 0.098 0.902 32 H 0.247 0.753 33 H 0.121 0.879 34 H 0.122 0.878 35 H 0.228 0.772 36 H 0.091 0.909 37 H 0.113 0.887 38 H 0.106 0.894 39 H 0.293 0.707 Dipole moment (debyes) X Y Z Total from point charges -12.832 20.252 -1.536 24.024 hybrid contribution 0.571 -0.343 0.388 0.771 sum -12.262 19.908 -1.148 23.410 Atomic orbital electron populations 1.21840 0.92220 1.02521 1.03221 1.22114 0.97957 0.99901 0.90516 0.87651 1.22161 0.95821 0.85237 0.96403 1.47697 1.57435 1.14284 1.18049 1.15244 0.79078 0.79271 0.83319 1.90898 1.58667 1.80939 1.19820 1.44745 1.57314 1.14846 1.21425 1.20731 1.00520 0.83333 0.94500 1.20472 0.84629 0.83206 0.88318 1.90523 1.60242 1.74996 1.24164 1.41913 1.48095 1.14064 1.17674 1.19031 1.29507 0.96956 1.00442 0.91768 1.26055 0.96015 0.95264 1.03421 1.69779 1.37090 1.10334 1.39421 0.85455 0.80574 0.78889 0.77279 1.18153 1.19938 1.15476 1.22383 0.95854 1.00278 0.82559 1.22154 0.99879 0.96911 0.92301 0.84857 1.22929 0.72598 0.87717 0.82361 1.90719 1.52617 1.18704 1.80545 1.84536 1.74234 1.46418 1.27170 0.92222 0.91801 0.90705 0.90619 0.90189 0.75302 0.87884 0.87833 0.77198 0.90945 0.88699 0.89355 0.70705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 8.89 71.98 0.64 -0.98 16 2 C -0.09 -1.18 3.00 -9.91 -0.03 -1.21 16 3 H 0.11 1.54 6.85 -2.38 -0.02 1.52 16 4 C 0.13 2.24 6.62 86.53 0.57 2.81 16 5 N -0.64 -14.24 3.29 -828.06 -2.73 -16.96 16 6 C 0.73 21.74 8.54 179.06 1.53 23.27 16 7 O -0.62 -22.28 16.68 -4.02 -0.07 -22.34 16 8 N -0.73 -22.22 5.50 -482.30 -2.65 -24.87 16 9 C 0.14 4.44 6.15 85.63 0.53 4.97 16 10 C 0.45 19.06 7.85 87.65 0.69 19.75 16 11 O -0.61 -30.89 15.24 -3.06 -0.05 -30.94 16 12 N -0.58 -26.09 5.09 -306.97 -1.56 -27.65 16 13 C -0.33 -18.51 10.16 84.04 0.85 -17.66 16 14 H 0.06 4.25 7.39 -2.91 -0.02 4.23 16 15 C -0.01 -0.41 5.50 84.93 0.47 0.06 16 16 N -0.93 -54.03 13.96 21.66 0.30 -53.72 16 17 Si 0.96 37.67 27.74 68.60 1.90 39.57 16 18 H -0.26 -9.65 7.11 99.48 0.71 -8.95 16 19 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 20 H -0.23 -7.73 6.52 99.48 0.65 -7.08 16 21 C 0.11 1.94 6.36 86.61 0.55 2.49 16 22 C -0.09 -1.31 3.10 -10.45 -0.03 -1.34 16 23 H 0.13 1.66 7.86 -2.38 -0.02 1.64 16 24 C 0.50 7.56 7.63 71.23 0.54 8.11 16 25 O -0.54 -10.76 16.20 21.98 0.36 -10.41 16 26 O -0.51 -5.97 13.42 -51.42 -0.69 -6.66 16 27 H 0.06 0.72 8.13 -2.39 -0.02 0.70 16 28 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.08 1.52 7.59 -2.39 -0.02 1.50 16 32 H 0.41 12.51 5.77 -92.71 -0.54 11.98 16 33 H 0.10 3.03 8.14 -2.39 -0.02 3.01 16 34 H 0.10 3.03 8.14 -2.39 -0.02 3.01 16 35 H 0.39 14.84 5.76 -92.70 -0.53 14.31 16 36 H 0.28 14.98 8.31 -92.71 -0.77 14.21 16 37 H 0.09 1.69 6.83 -2.39 -0.02 1.67 16 38 H 0.09 1.39 8.04 -2.39 -0.02 1.37 16 39 H 0.43 1.50 9.10 -74.05 -0.67 0.83 16 Total: -1.00 -77.61 334.01 0.45 -77.17 By element: Atomic # 1 Polarization: 37.23 SS G_CDS: -0.68 Total: 36.56 kcal Atomic # 6 Polarization: 33.95 SS G_CDS: 6.31 Total: 40.26 kcal Atomic # 7 Polarization: -116.57 SS G_CDS: -6.64 Total: -123.21 kcal Atomic # 8 Polarization: -69.90 SS G_CDS: -0.45 Total: -70.35 kcal Atomic # 14 Polarization: 37.67 SS G_CDS: 1.90 Total: 39.57 kcal Total: -77.61 0.45 -77.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599856368.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.915 kcal (2) G-P(sol) polarization free energy of solvation -77.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds