Wall clock time and date at job start Tue Mar 31 2020 03:41:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86800 * 119.99547 * 2 1 4 4 H 1.48499 * 109.47268 * 269.99735 * 3 2 1 5 5 H 1.48498 * 109.47211 * 29.99994 * 3 2 1 6 6 H 1.48505 * 109.46734 * 149.99787 * 3 2 1 7 7 C 1.38941 * 120.00180 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00369 * 180.02562 * 7 2 1 9 9 N 1.37101 * 119.99927 * 359.97438 * 7 2 1 10 10 C 1.34780 * 119.99707 * 180.02562 * 9 7 2 11 11 O 1.21294 * 120.00356 * 359.97438 * 10 9 7 12 12 C 1.50701 * 119.99795 * 180.02562 * 10 9 7 13 13 N 1.46901 * 109.46921 * 179.97438 * 12 10 9 14 14 C 1.48554 * 111.00208 * 285.41849 * 13 12 10 15 15 C 1.54378 * 104.59426 * 200.96461 * 14 13 12 16 16 C 1.54258 * 105.06502 * 23.85028 * 15 14 13 17 17 C 1.48562 * 110.99567 * 169.99894 * 13 12 10 18 18 H 1.08997 * 110.41452 * 40.26202 * 17 13 12 19 19 C 1.50702 * 110.41407 * 277.93585 * 17 13 12 20 20 O 1.21278 * 119.99634 * 0.02562 * 19 17 13 21 21 N 1.34771 * 120.00361 * 180.02562 * 19 17 13 22 22 C 1.46500 * 120.00194 * 180.02562 * 21 19 17 23 23 C 1.50698 * 109.47093 * 179.97438 * 22 21 19 24 24 O 1.20825 * 120.00133 * 359.97438 * 23 22 21 25 25 O 1.34235 * 119.99972 * 179.97438 * 23 22 21 26 26 H 0.97000 * 119.99884 * 0.02562 * 1 2 3 27 27 H 0.96995 * 120.00282 * 359.97438 * 9 7 2 28 28 H 1.09002 * 109.47060 * 299.99722 * 12 10 9 29 29 H 1.09001 * 109.47380 * 59.99809 * 12 10 9 30 30 H 1.09002 * 110.41148 * 319.73608 * 14 13 12 31 31 H 1.08997 * 110.41369 * 82.18011 * 14 13 12 32 32 H 1.09008 * 110.31902 * 264.95542 * 15 14 13 33 33 H 1.09005 * 110.41276 * 142.79530 * 15 14 13 34 34 H 1.09002 * 110.32283 * 241.10672 * 16 15 14 35 35 H 1.08990 * 110.32351 * 118.89886 * 16 15 14 36 36 H 0.97001 * 119.99908 * 359.97438 * 21 19 17 37 37 H 1.09001 * 109.46520 * 299.99325 * 22 21 19 38 38 H 1.08996 * 109.47587 * 59.98941 * 22 21 19 39 39 H 0.96696 * 117.00108 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4956 2.0465 -1.4000 5 1 1.4454 2.6527 0.7000 6 1 3.5456 1.4403 0.7001 7 6 2.0089 -1.2032 -0.0005 8 1 3.0889 -1.2033 -0.0001 9 7 1.3234 -2.3906 -0.0005 10 6 1.9974 -3.5578 -0.0005 11 8 3.2104 -3.5578 -0.0010 12 6 1.2439 -4.8629 -0.0011 13 7 2.1986 -5.9794 -0.0016 14 6 2.8249 -6.1438 -1.3386 15 6 3.3426 -7.5982 -1.3495 16 6 2.4753 -8.3402 -0.3118 17 6 1.5064 -7.2717 0.2387 18 1 0.5601 -7.3023 -0.3013 19 6 1.2755 -7.4781 1.7135 20 8 1.6445 -6.6395 2.5082 21 7 0.6590 -8.5945 2.1494 22 6 0.4341 -8.7948 3.5831 23 6 -0.2681 -10.1100 3.8025 24 8 -0.5520 -10.8082 2.8581 25 8 -0.5782 -10.5059 5.0471 26 1 -0.4850 0.8401 -0.0004 27 1 0.3535 -2.3906 0.0002 28 1 0.6170 -4.9209 0.8886 29 1 0.6176 -4.9205 -0.8913 30 1 2.0849 -5.9980 -2.1256 31 1 3.6524 -5.4448 -1.4594 32 1 4.3922 -7.6285 -1.0567 33 1 3.2128 -8.0406 -2.3372 34 1 3.0992 -8.7348 0.4902 35 1 1.9184 -9.1456 -0.7905 36 1 0.3636 -9.2650 1.5138 37 1 1.3919 -8.8027 4.1035 38 1 -0.1833 -7.9845 3.9708 39 1 -1.0279 -11.3571 5.1378 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601074712.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:41:06 Heat of formation + Delta-G solvation = -146.031098 kcal Electronic energy + Delta-G solvation = -24233.228328 eV Core-core repulsion = 20369.287538 eV Total energy + Delta-G solvation = -3863.940791 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 299.136 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.93704 -40.06670 -38.38794 -37.25535 -36.70705 -34.70496 -33.83224 -32.00269 -31.05522 -30.20518 -27.99807 -26.69897 -24.24908 -22.95410 -21.65474 -20.96844 -20.31303 -19.10365 -18.55506 -17.91961 -17.79515 -16.70735 -16.37326 -16.11493 -15.73259 -15.56935 -14.83065 -14.68295 -14.42967 -14.31621 -13.73998 -13.61636 -13.27305 -13.16167 -12.94106 -12.65590 -12.10055 -12.06268 -12.01741 -11.65526 -11.41608 -11.18872 -11.15076 -11.04087 -10.85295 -10.58086 -10.33007 -10.13757 -9.80088 -9.41266 -9.39938 -8.45903 -7.96651 -7.86016 -6.33269 -3.73497 1.63140 2.18719 2.61007 3.06645 3.23537 3.31357 3.38136 4.00087 4.05274 4.29903 4.47451 4.55573 4.67067 4.86417 4.91024 4.93979 5.10134 5.22347 5.25905 5.32839 5.52138 5.66530 5.72988 5.78927 5.91646 5.93648 5.98956 6.06089 6.18556 6.36185 6.41078 6.99274 7.18889 7.27530 7.36787 7.63289 8.14860 8.17171 8.71711 9.27299 9.64240 10.16979 10.84936 Molecular weight = 299.14amu Principal moments of inertia in cm(-1) A = 0.019103 B = 0.003222 C = 0.002872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.352043 B = 8688.037032 C = 9747.409973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.020 3.980 3 Si 0.929 3.071 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.295 4.295 8 H 0.103 0.897 9 N -0.568 5.568 10 C 0.453 3.547 11 O -0.574 6.574 12 C 0.036 3.964 13 N -0.459 5.459 14 C 0.038 3.962 15 C -0.122 4.122 16 C -0.111 4.111 17 C 0.042 3.958 18 H 0.077 0.923 19 C 0.525 3.475 20 O -0.499 6.499 21 N -0.733 5.733 22 C 0.128 3.872 23 C 0.480 3.520 24 O -0.514 6.514 25 O -0.509 6.509 26 H 0.270 0.730 27 H 0.391 0.609 28 H 0.089 0.911 29 H 0.050 0.950 30 H 0.041 0.959 31 H 0.101 0.899 32 H 0.075 0.925 33 H 0.070 0.930 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.409 0.591 37 H 0.114 0.886 38 H 0.114 0.886 39 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.367 -22.223 2.906 22.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.181 4.181 3 Si 0.757 3.243 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.194 1.194 7 C -0.424 4.424 8 H 0.120 0.880 9 N -0.205 5.205 10 C 0.238 3.762 11 O -0.457 6.457 12 C -0.095 4.095 13 N -0.183 5.183 14 C -0.090 4.090 15 C -0.160 4.160 16 C -0.149 4.149 17 C -0.071 4.071 18 H 0.095 0.905 19 C 0.311 3.689 20 O -0.370 6.370 21 N -0.393 5.393 22 C 0.003 3.997 23 C 0.322 3.678 24 O -0.402 6.402 25 O -0.321 6.321 26 H 0.080 0.920 27 H 0.224 0.776 28 H 0.108 0.892 29 H 0.068 0.932 30 H 0.059 0.941 31 H 0.119 0.881 32 H 0.094 0.906 33 H 0.088 0.912 34 H 0.094 0.906 35 H 0.094 0.906 36 H 0.247 0.753 37 H 0.131 0.869 38 H 0.132 0.868 39 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges -1.876 -21.095 3.633 21.488 hybrid contribution -1.516 -0.204 -0.735 1.697 sum -3.393 -21.299 2.898 21.761 Atomic orbital electron populations 1.69619 1.05907 1.27969 1.51163 1.25236 0.95624 0.99618 0.97596 0.85868 0.79274 0.80933 0.78267 1.20520 1.21000 1.19422 1.19691 0.93331 0.82219 1.47183 0.87965 1.41833 1.09098 1.04527 1.65065 1.19579 0.88335 0.84301 0.84019 1.90506 1.13624 1.86940 1.54644 1.22079 0.94124 0.91873 1.01470 1.64813 1.26317 0.98963 1.28212 1.23198 1.00078 0.96937 0.88778 1.22301 1.00395 0.94958 0.98345 1.22239 0.97237 0.96282 0.99184 1.22608 0.98577 0.93876 0.92026 0.90508 1.20479 0.76841 0.80519 0.91096 1.90800 1.47622 1.42369 1.56229 1.45799 1.63048 1.23990 1.06440 1.20549 1.02163 0.92054 0.84958 1.23324 0.75908 0.88034 0.80509 1.90730 1.51148 1.55328 1.43003 1.84504 1.72709 1.43646 1.31229 0.92012 0.77605 0.89236 0.93239 0.94066 0.88061 0.90641 0.91166 0.90648 0.90560 0.75349 0.86854 0.86834 0.72446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.31 13.05 55.50 0.72 -24.58 16 2 C 0.02 0.56 5.50 -17.47 -0.10 0.46 16 3 Si 0.93 21.65 29.55 -169.99 -5.02 16.63 16 4 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 5 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 6 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 7 C -0.29 -8.49 9.68 -14.94 -0.14 -8.64 16 8 H 0.10 3.08 7.16 -52.49 -0.38 2.71 16 9 N -0.57 -15.05 5.29 -10.96 -0.06 -15.11 16 10 C 0.45 11.30 7.63 -10.98 -0.08 11.22 16 11 O -0.57 -16.25 14.80 5.55 0.08 -16.17 16 12 C 0.04 0.70 5.13 -4.97 -0.03 0.67 16 13 N -0.46 -8.08 4.24 -224.93 -0.95 -9.04 16 14 C 0.04 0.58 5.92 -2.19 -0.01 0.57 16 15 C -0.12 -1.39 7.00 -25.35 -0.18 -1.57 16 16 C -0.11 -1.15 6.53 -25.35 -0.17 -1.31 16 17 C 0.04 0.54 2.67 -67.22 -0.18 0.36 16 18 H 0.08 0.85 8.00 -51.93 -0.42 0.43 16 19 C 0.53 7.27 6.78 -10.99 -0.07 7.20 16 20 O -0.50 -9.28 15.90 5.56 0.09 -9.19 16 21 N -0.73 -7.34 5.51 -61.48 -0.34 -7.68 16 22 C 0.13 1.08 6.27 -5.19 -0.03 1.05 16 23 C 0.48 3.67 8.40 36.00 0.30 3.97 16 24 O -0.51 -5.14 16.43 -18.75 -0.31 -5.45 16 25 O -0.51 -2.74 13.42 -39.27 -0.53 -3.27 16 26 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 27 H 0.39 9.92 7.90 -40.82 -0.32 9.60 16 28 H 0.09 1.70 7.39 -51.93 -0.38 1.32 16 29 H 0.05 0.83 7.77 -51.93 -0.40 0.43 16 30 H 0.04 0.59 7.75 -51.93 -0.40 0.19 16 31 H 0.10 1.87 7.24 -51.93 -0.38 1.49 16 32 H 0.07 0.88 8.14 -51.92 -0.42 0.46 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.07 0.80 7.86 -51.93 -0.41 0.39 16 35 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.41 3.50 7.44 -40.82 -0.30 3.19 16 37 H 0.11 0.92 8.14 -51.93 -0.42 0.49 16 38 H 0.11 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.42 0.48 9.10 45.56 0.41 0.89 16 LS Contribution 337.61 15.07 5.09 5.09 Total: -1.00 -37.32 337.61 -6.14 -43.46 By element: Atomic # 1 Polarization: 15.54 SS G_CDS: -4.22 Total: 11.32 kcal Atomic # 6 Polarization: 14.68 SS G_CDS: -0.69 Total: 13.99 kcal Atomic # 7 Polarization: -55.78 SS G_CDS: -0.63 Total: -56.41 kcal Atomic # 8 Polarization: -33.41 SS G_CDS: -0.66 Total: -34.08 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -37.32 -6.14 -43.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601074712.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.567 kcal (2) G-P(sol) polarization free energy of solvation -37.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds