Wall clock time and date at job start Tue Mar 31 2020 03:41:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86800 * 119.99547 * 2 1 4 4 H 1.48499 * 109.47268 * 269.99735 * 3 2 1 5 5 H 1.48498 * 109.47211 * 29.99994 * 3 2 1 6 6 H 1.48505 * 109.46734 * 149.99787 * 3 2 1 7 7 C 1.38941 * 120.00180 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00369 * 180.02562 * 7 2 1 9 9 N 1.37101 * 119.99927 * 359.97438 * 7 2 1 10 10 C 1.34780 * 119.99707 * 180.02562 * 9 7 2 11 11 O 1.21294 * 120.00356 * 359.97438 * 10 9 7 12 12 C 1.50701 * 119.99795 * 180.02562 * 10 9 7 13 13 N 1.46901 * 109.46921 * 179.97438 * 12 10 9 14 14 C 1.48554 * 111.00208 * 285.41849 * 13 12 10 15 15 C 1.54378 * 104.59426 * 200.96461 * 14 13 12 16 16 C 1.54258 * 105.06502 * 23.85028 * 15 14 13 17 17 C 1.48562 * 110.99567 * 169.99894 * 13 12 10 18 18 H 1.08997 * 110.41452 * 40.26202 * 17 13 12 19 19 C 1.50702 * 110.41407 * 277.93585 * 17 13 12 20 20 O 1.21278 * 119.99634 * 0.02562 * 19 17 13 21 21 N 1.34771 * 120.00361 * 180.02562 * 19 17 13 22 22 C 1.46500 * 120.00194 * 180.02562 * 21 19 17 23 23 C 1.50698 * 109.47093 * 179.97438 * 22 21 19 24 24 O 1.20825 * 120.00133 * 359.97438 * 23 22 21 25 25 O 1.34235 * 119.99972 * 179.97438 * 23 22 21 26 26 H 0.97000 * 119.99884 * 0.02562 * 1 2 3 27 27 H 0.96995 * 120.00282 * 359.97438 * 9 7 2 28 28 H 1.09002 * 109.47060 * 299.99722 * 12 10 9 29 29 H 1.09001 * 109.47380 * 59.99809 * 12 10 9 30 30 H 1.09002 * 110.41148 * 319.73608 * 14 13 12 31 31 H 1.08997 * 110.41369 * 82.18011 * 14 13 12 32 32 H 1.09008 * 110.31902 * 264.95542 * 15 14 13 33 33 H 1.09005 * 110.41276 * 142.79530 * 15 14 13 34 34 H 1.09002 * 110.32283 * 241.10672 * 16 15 14 35 35 H 1.08990 * 110.32351 * 118.89886 * 16 15 14 36 36 H 0.97001 * 119.99908 * 359.97438 * 21 19 17 37 37 H 1.09001 * 109.46520 * 299.99325 * 22 21 19 38 38 H 1.08996 * 109.47587 * 59.98941 * 22 21 19 39 39 H 0.96696 * 117.00108 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4956 2.0465 -1.4000 5 1 1.4454 2.6527 0.7000 6 1 3.5456 1.4403 0.7001 7 6 2.0089 -1.2032 -0.0005 8 1 3.0889 -1.2033 -0.0001 9 7 1.3234 -2.3906 -0.0005 10 6 1.9974 -3.5578 -0.0005 11 8 3.2104 -3.5578 -0.0010 12 6 1.2439 -4.8629 -0.0011 13 7 2.1986 -5.9794 -0.0016 14 6 2.8249 -6.1438 -1.3386 15 6 3.3426 -7.5982 -1.3495 16 6 2.4753 -8.3402 -0.3118 17 6 1.5064 -7.2717 0.2387 18 1 0.5601 -7.3023 -0.3013 19 6 1.2755 -7.4781 1.7135 20 8 1.6445 -6.6395 2.5082 21 7 0.6590 -8.5945 2.1494 22 6 0.4341 -8.7948 3.5831 23 6 -0.2681 -10.1100 3.8025 24 8 -0.5520 -10.8082 2.8581 25 8 -0.5782 -10.5059 5.0471 26 1 -0.4850 0.8401 -0.0004 27 1 0.3535 -2.3906 0.0002 28 1 0.6170 -4.9209 0.8886 29 1 0.6176 -4.9205 -0.8913 30 1 2.0849 -5.9980 -2.1256 31 1 3.6524 -5.4448 -1.4594 32 1 4.3922 -7.6285 -1.0567 33 1 3.2128 -8.0406 -2.3372 34 1 3.0992 -8.7348 0.4902 35 1 1.9184 -9.1456 -0.7905 36 1 0.3636 -9.2650 1.5138 37 1 1.3919 -8.8027 4.1035 38 1 -0.1833 -7.9845 3.9708 39 1 -1.0279 -11.3571 5.1378 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601074712.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:41:06 Heat of formation + Delta-G solvation = -178.647105 kcal Electronic energy + Delta-G solvation = -24234.642665 eV Core-core repulsion = 20369.287538 eV Total energy + Delta-G solvation = -3865.355127 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 299.136 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.70088 -41.06599 -40.01416 -38.66047 -37.29657 -35.93725 -35.64381 -33.46648 -32.97915 -31.16637 -28.84808 -28.34446 -26.10720 -23.91056 -22.41447 -22.10784 -21.26887 -20.97401 -19.88570 -19.22029 -18.78388 -17.62580 -17.46906 -17.23708 -16.88071 -16.80396 -16.39069 -16.00059 -15.81984 -15.62066 -15.47688 -14.80775 -14.43756 -14.17420 -13.98484 -13.83626 -13.68912 -13.50624 -13.09883 -12.93114 -12.68670 -12.62162 -12.41466 -12.28538 -12.12022 -12.09450 -11.83518 -11.54153 -11.47010 -10.92022 -10.35381 -10.29011 -10.00172 -9.35787 -8.45798 -5.94577 1.03429 1.37853 1.40573 1.49767 1.54353 1.56934 2.06472 2.26987 2.34167 2.83158 3.20290 3.37426 3.56311 3.65111 3.99301 4.05343 4.16980 4.20434 4.26601 4.28053 4.36408 4.38362 4.50918 4.60678 4.74259 4.96148 5.04529 5.17613 5.20603 5.28394 5.40877 5.49325 5.79127 5.89835 6.05649 6.43251 6.61583 6.87178 7.13689 7.18944 7.56583 8.13384 8.72080 Molecular weight = 299.14amu Principal moments of inertia in cm(-1) A = 0.019103 B = 0.003222 C = 0.002872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.352043 B = 8688.037032 C = 9747.409973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.014 4.014 3 Si 0.994 3.006 4 H -0.268 1.268 5 H -0.270 1.270 6 H -0.275 1.275 7 C -0.332 4.332 8 H 0.077 0.923 9 N -0.576 5.576 10 C 0.446 3.554 11 O -0.614 6.614 12 C 0.052 3.948 13 N -0.495 5.495 14 C 0.034 3.966 15 C -0.113 4.113 16 C -0.102 4.102 17 C 0.040 3.960 18 H 0.107 0.893 19 C 0.527 3.473 20 O -0.557 6.557 21 N -0.714 5.714 22 C 0.121 3.879 23 C 0.495 3.505 24 O -0.537 6.537 25 O -0.504 6.504 26 H 0.277 0.723 27 H 0.395 0.605 28 H 0.090 0.910 29 H 0.078 0.922 30 H 0.055 0.945 31 H 0.057 0.943 32 H 0.066 0.934 33 H 0.103 0.897 34 H 0.071 0.929 35 H 0.119 0.881 36 H 0.420 0.580 37 H 0.118 0.882 38 H 0.116 0.884 39 H 0.436 0.564 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.552 -23.997 2.461 24.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.214 4.214 3 Si 0.818 3.182 4 H -0.193 1.193 5 H -0.194 1.194 6 H -0.200 1.200 7 C -0.462 4.462 8 H 0.095 0.905 9 N -0.214 5.214 10 C 0.233 3.767 11 O -0.500 6.500 12 C -0.079 4.079 13 N -0.219 5.219 14 C -0.094 4.094 15 C -0.151 4.151 16 C -0.140 4.140 17 C -0.072 4.072 18 H 0.125 0.875 19 C 0.313 3.687 20 O -0.433 6.433 21 N -0.373 5.373 22 C -0.003 4.003 23 C 0.338 3.662 24 O -0.428 6.428 25 O -0.318 6.318 26 H 0.087 0.913 27 H 0.228 0.772 28 H 0.109 0.891 29 H 0.096 0.904 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.085 0.915 33 H 0.121 0.879 34 H 0.090 0.910 35 H 0.137 0.863 36 H 0.259 0.741 37 H 0.135 0.865 38 H 0.133 0.867 39 H 0.299 0.701 Dipole moment (debyes) X Y Z Total from point charges -3.117 -22.946 3.193 23.376 hybrid contribution -1.172 0.270 -0.528 1.314 sum -4.290 -22.676 2.664 23.232 Atomic orbital electron populations 1.69681 1.06832 1.29249 1.50581 1.26051 0.96587 1.02392 0.96331 0.84916 0.77799 0.76779 0.78748 1.19340 1.19439 1.19973 1.19652 0.92627 0.84017 1.49857 0.90492 1.41911 1.09187 1.04689 1.65629 1.20652 0.88259 0.85795 0.81958 1.90471 1.15712 1.87845 1.55945 1.21846 0.93830 0.89527 1.02718 1.64651 1.27201 1.00414 1.29681 1.23162 0.99070 0.98754 0.88366 1.22278 0.99917 0.92330 1.00579 1.22301 0.96719 0.96184 0.98797 1.22779 1.00280 0.92209 0.91919 0.87545 1.20680 0.76270 0.80558 0.91201 1.90783 1.50429 1.44523 1.57560 1.45589 1.61335 1.22882 1.07490 1.20642 1.02724 0.92964 0.84005 1.22947 0.75256 0.87252 0.80772 1.90728 1.52288 1.55937 1.43813 1.84458 1.72540 1.45063 1.29739 0.91310 0.77176 0.89134 0.90382 0.92707 0.92394 0.91536 0.87856 0.91037 0.86288 0.74094 0.86468 0.86661 0.70076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.54 13.05 21.66 0.28 -51.25 16 2 C -0.01 -0.79 5.50 84.92 0.47 -0.33 16 3 Si 0.99 44.55 29.55 68.60 2.03 46.58 16 4 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 5 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 6 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 7 C -0.33 -19.82 9.68 84.04 0.81 -19.00 16 8 H 0.08 4.89 7.16 -2.91 -0.02 4.87 16 9 N -0.58 -31.60 5.29 -306.98 -1.62 -33.22 16 10 C 0.45 23.12 7.63 87.66 0.67 23.79 16 11 O -0.61 -36.60 14.80 -3.07 -0.05 -36.65 16 12 C 0.05 2.03 5.13 85.56 0.44 2.46 16 13 N -0.49 -17.33 4.24 -865.55 -3.67 -21.00 16 14 C 0.03 1.04 5.92 86.45 0.51 1.55 16 15 C -0.11 -2.33 7.00 31.49 0.22 -2.11 16 16 C -0.10 -1.78 6.53 31.49 0.21 -1.57 16 17 C 0.04 0.95 2.67 44.32 0.12 1.07 16 18 H 0.11 1.95 8.00 -2.39 -0.02 1.93 16 19 C 0.53 14.00 6.78 87.66 0.59 14.60 16 20 O -0.56 -21.00 15.90 -3.02 -0.05 -21.05 16 21 N -0.71 -12.97 5.51 -466.80 -2.57 -15.54 16 22 C 0.12 1.90 6.27 85.63 0.54 2.43 16 23 C 0.49 6.55 8.40 71.24 0.60 7.15 16 24 O -0.54 -9.53 16.43 21.97 0.36 -9.17 16 25 O -0.50 -4.26 13.42 -51.47 -0.69 -4.95 16 26 H 0.28 14.44 8.31 -92.71 -0.77 13.67 16 27 H 0.39 20.55 7.90 -92.71 -0.73 19.82 16 28 H 0.09 3.47 7.39 -2.39 -0.02 3.45 16 29 H 0.08 2.53 7.77 -2.39 -0.02 2.51 16 30 H 0.05 1.49 7.75 -2.39 -0.02 1.47 16 31 H 0.06 2.25 7.24 -2.39 -0.02 2.24 16 32 H 0.07 1.48 8.14 -2.38 -0.02 1.47 16 33 H 0.10 1.47 8.14 -2.38 -0.02 1.45 16 34 H 0.07 1.33 7.86 -2.39 -0.02 1.31 16 35 H 0.12 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.42 5.98 7.44 -92.71 -0.69 5.29 16 37 H 0.12 1.79 8.14 -2.39 -0.02 1.77 16 38 H 0.12 1.81 8.14 -2.39 -0.02 1.79 16 39 H 0.44 -0.14 9.10 -74.06 -0.67 -0.82 16 Total: -1.00 -84.35 337.61 -1.78 -86.13 By element: Atomic # 1 Polarization: 31.06 SS G_CDS: -0.97 Total: 30.09 kcal Atomic # 6 Polarization: 24.87 SS G_CDS: 5.17 Total: 30.04 kcal Atomic # 7 Polarization: -113.43 SS G_CDS: -7.58 Total: -121.01 kcal Atomic # 8 Polarization: -71.40 SS G_CDS: -0.42 Total: -71.82 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -84.35 -1.78 -86.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601074712.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.517 kcal (2) G-P(sol) polarization free energy of solvation -84.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds