Wall clock time and date at job start Tue Mar 31 2020 03:42:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50699 * 110.29199 * 2 1 4 4 O 1.20830 * 119.99484 * 240.68003 * 3 2 1 5 5 O 1.34229 * 120.00329 * 60.67939 * 3 2 1 6 6 C 1.54617 * 110.41359 * 237.80181 * 2 1 3 7 7 C 1.54595 * 102.91507 * 262.76402 * 6 2 1 8 8 N 1.48119 * 103.42320 * 322.86787 * 7 6 2 9 9 C 1.34771 * 127.03888 * 219.28164 * 8 7 6 10 10 O 1.21583 * 120.00543 * 179.97438 * 9 8 7 11 11 N 1.34784 * 119.99547 * 359.68865 * 9 8 7 12 12 C 1.46499 * 119.99971 * 179.97438 * 11 9 8 13 13 C 1.50697 * 109.47276 * 180.02562 * 12 11 9 14 14 O 1.21294 * 119.99892 * 359.97438 * 13 12 11 15 15 N 1.34773 * 119.99847 * 180.02562 * 13 12 11 16 16 C 1.37104 * 119.99655 * 180.02562 * 15 13 12 17 17 H 1.07993 * 120.00229 * 359.97438 * 16 15 13 18 18 C 1.38953 * 119.99679 * 179.97438 * 16 15 13 19 19 N 1.31413 * 119.99861 * 179.97438 * 18 16 15 20 20 Si 1.86802 * 120.00323 * 359.97438 * 18 16 15 21 21 H 1.48503 * 109.47049 * 89.99897 * 20 18 16 22 22 H 1.48492 * 109.47045 * 210.00510 * 20 18 16 23 23 H 1.48500 * 109.46729 * 330.00155 * 20 18 16 24 24 C 1.47489 * 105.93162 * 39.02455 * 8 7 6 25 25 H 1.09000 * 109.47536 * 299.32223 * 1 2 3 26 26 H 1.09003 * 109.46681 * 59.32347 * 1 2 3 27 27 H 1.08998 * 109.47336 * 179.32174 * 1 2 3 28 28 H 0.96698 * 117.00041 * 180.02562 * 5 3 2 29 29 H 1.08992 * 110.74222 * 21.25426 * 6 2 1 30 30 H 1.09006 * 110.73478 * 144.58007 * 6 2 1 31 31 H 1.08994 * 110.61874 * 204.35598 * 7 6 2 32 32 H 1.09001 * 110.54457 * 81.34572 * 7 6 2 33 33 H 0.96999 * 120.00044 * 359.97438 * 11 9 8 34 34 H 1.09004 * 109.47024 * 300.00310 * 12 11 9 35 35 H 1.09005 * 109.47136 * 59.99926 * 12 11 9 36 36 H 0.97000 * 120.00550 * 359.97438 * 15 13 12 37 37 H 0.96998 * 120.00171 * 179.97438 * 19 18 16 38 38 H 1.08998 * 109.91644 * 94.13887 * 24 8 7 39 39 H 1.08994 * 109.91285 * 215.41981 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0526 1.4135 0.0000 4 8 2.7427 1.8023 -0.9124 5 8 1.7515 2.2404 1.0135 6 6 2.0693 -0.7721 -1.2262 7 6 2.3677 -2.1744 -0.6477 8 7 2.8824 -1.8836 0.7104 9 6 3.8945 -2.5069 1.3456 10 8 4.2132 -2.1614 2.4669 11 7 4.5497 -3.5172 0.7400 12 6 5.6503 -4.1944 1.4301 13 6 6.2094 -5.2767 0.5430 14 8 5.7348 -5.4642 -0.5574 15 7 7.2359 -6.0369 0.9727 16 6 7.7449 -7.0212 0.1653 17 1 7.3230 -7.1876 -0.8147 18 6 8.8037 -7.8046 0.6081 19 7 9.2912 -8.7484 -0.1655 20 14 9.5340 -7.5162 2.3031 21 1 8.8209 -8.3561 3.2988 22 1 10.9739 -7.8790 2.2899 23 1 9.3877 -6.0842 2.6680 24 6 2.0649 -0.7682 1.2230 25 1 -0.3634 0.5033 0.8960 26 1 -0.3633 0.5243 -0.8839 27 1 -0.3634 -1.0276 -0.0122 28 1 2.1093 3.1377 0.9692 29 1 1.3136 -0.8288 -2.0096 30 1 2.9825 -0.3105 -1.6019 31 1 3.1243 -2.6829 -1.2450 32 1 1.4552 -2.7682 -0.5941 33 1 4.2926 -3.7958 -0.1528 34 1 6.4340 -3.4725 1.6600 35 1 5.2813 -4.6370 2.3554 36 1 7.6152 -5.8872 1.8528 37 1 10.0305 -9.2950 0.1434 38 1 1.2330 -1.1568 1.8103 39 1 2.6793 -0.1087 1.8359 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604499128.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:42:18 Heat of formation + Delta-G solvation = -174.520754 kcal Electronic energy + Delta-G solvation = -24165.358811 eV Core-core repulsion = 20300.182616 eV Total energy + Delta-G solvation = -3865.176195 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 299.136 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.07563 -41.11645 -40.22087 -38.74186 -37.17096 -36.30177 -35.38980 -34.09985 -33.80465 -30.70148 -29.67858 -27.50810 -26.27906 -25.17067 -24.12834 -21.50140 -21.20717 -20.74373 -20.58784 -19.31629 -18.91417 -17.77252 -17.52120 -17.40321 -16.97165 -16.73770 -16.69455 -16.12937 -15.80565 -15.38646 -14.94799 -14.83908 -14.54312 -14.32265 -14.09376 -13.94309 -13.73480 -13.53177 -13.36432 -13.06825 -12.96191 -12.73724 -12.55422 -12.44827 -12.13828 -12.00438 -11.80906 -11.58246 -11.54878 -11.43088 -10.66524 -10.40004 -10.31145 -9.67031 -8.45706 -6.07689 1.06253 1.31220 1.34124 1.37400 1.44667 1.77595 1.95663 2.06186 2.20488 2.66959 3.00303 3.10626 3.19068 3.42302 3.80057 3.97447 4.08769 4.21320 4.28653 4.36723 4.41511 4.50050 4.58438 4.70610 4.79996 4.90590 4.95344 5.06451 5.14853 5.23786 5.33354 5.48706 5.54643 5.86840 5.90702 6.48373 6.77343 6.81891 6.91204 7.27102 7.40690 7.77196 8.70680 Molecular weight = 299.14amu Principal moments of inertia in cm(-1) A = 0.033140 B = 0.002779 C = 0.002701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.706332 B =10072.962847 C =10365.571390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.062 4.062 3 C 0.493 3.507 4 O -0.546 6.546 5 O -0.506 6.506 6 C -0.116 4.116 7 C 0.095 3.905 8 N -0.643 5.643 9 C 0.726 3.274 10 O -0.627 6.627 11 N -0.725 5.725 12 C 0.137 3.863 13 C 0.446 3.554 14 O -0.613 6.613 15 N -0.577 5.577 16 C -0.331 4.331 17 H 0.064 0.936 18 C -0.007 4.007 19 N -0.926 5.926 20 Si 0.958 3.042 21 H -0.255 1.255 22 H -0.274 1.274 23 H -0.233 1.233 24 C 0.139 3.861 25 H 0.080 0.920 26 H 0.076 0.924 27 H 0.095 0.905 28 H 0.428 0.572 29 H 0.123 0.877 30 H 0.068 0.932 31 H 0.079 0.921 32 H 0.108 0.892 33 H 0.409 0.591 34 H 0.099 0.901 35 H 0.105 0.895 36 H 0.392 0.608 37 H 0.281 0.719 38 H 0.104 0.896 39 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.037 19.782 4.693 27.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.064 4.064 3 C 0.337 3.663 4 O -0.436 6.436 5 O -0.319 6.319 6 C -0.154 4.154 7 C -0.027 4.027 8 N -0.380 5.380 9 C 0.427 3.573 10 O -0.508 6.508 11 N -0.383 5.383 12 C 0.009 3.991 13 C 0.234 3.766 14 O -0.499 6.499 15 N -0.217 5.217 16 C -0.460 4.460 17 H 0.082 0.918 18 C -0.207 4.207 19 N -0.565 5.565 20 Si 0.778 3.222 21 H -0.180 1.180 22 H -0.199 1.199 23 H -0.157 1.157 24 C 0.015 3.985 25 H 0.099 0.901 26 H 0.095 0.905 27 H 0.114 0.886 28 H 0.290 0.710 29 H 0.142 0.858 30 H 0.087 0.913 31 H 0.098 0.902 32 H 0.126 0.874 33 H 0.248 0.752 34 H 0.117 0.883 35 H 0.123 0.877 36 H 0.228 0.772 37 H 0.091 0.909 38 H 0.122 0.878 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -18.846 19.383 4.566 27.417 hybrid contribution 1.264 0.224 0.061 1.285 sum -17.581 19.607 4.626 26.738 Atomic orbital electron populations 1.21917 0.87314 1.05311 1.04288 1.21493 1.00416 0.86927 0.97589 1.23415 0.75872 0.88685 0.78373 1.90727 1.37377 1.77614 1.37900 1.84487 1.71850 1.29131 1.46440 1.22806 1.03204 0.93315 0.96079 1.22767 1.00867 0.97713 0.81310 1.47799 1.34080 1.37023 1.19131 1.15300 0.78991 0.79578 0.83389 1.90883 1.70446 1.69671 1.19839 1.44717 1.36152 1.35994 1.21404 1.20725 0.90233 0.93522 0.94620 1.20439 0.82605 0.85251 0.88326 1.90519 1.62722 1.72741 1.23955 1.41911 1.30993 1.31345 1.17443 1.19032 1.15856 1.10946 1.00148 0.91760 1.26057 0.96397 0.94797 1.03488 1.69777 1.26356 1.21047 1.39357 0.85451 0.78601 0.80838 0.77280 1.17973 1.19879 1.15685 1.21966 0.94914 0.87117 0.94458 0.90058 0.90515 0.88649 0.71012 0.85840 0.91316 0.90207 0.87353 0.75242 0.88264 0.87682 0.77203 0.90906 0.87832 0.91809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.88 8.17 71.98 0.59 -0.29 16 2 C -0.06 -0.86 0.91 -52.04 -0.05 -0.90 16 3 C 0.49 8.64 6.75 71.24 0.48 9.12 16 4 O -0.55 -13.49 16.20 21.95 0.36 -13.13 16 5 O -0.51 -6.11 13.30 -51.41 -0.68 -6.79 16 6 C -0.12 -1.70 5.94 31.69 0.19 -1.51 16 7 C 0.10 1.58 6.92 86.61 0.60 2.18 16 8 N -0.64 -15.04 3.29 -828.03 -2.73 -17.76 16 9 C 0.73 22.89 8.54 179.05 1.53 24.42 16 10 O -0.63 -23.58 16.68 -3.98 -0.07 -23.65 16 11 N -0.72 -23.34 5.50 -482.29 -2.65 -26.00 16 12 C 0.14 4.63 6.15 85.63 0.53 5.16 16 13 C 0.45 19.56 7.85 87.66 0.69 20.24 16 14 O -0.61 -31.53 15.24 -3.07 -0.05 -31.58 16 15 N -0.58 -26.58 5.09 -306.99 -1.56 -28.15 16 16 C -0.33 -18.76 10.16 84.04 0.85 -17.91 16 17 H 0.06 4.30 7.39 -2.91 -0.02 4.27 16 18 C -0.01 -0.40 5.50 84.93 0.47 0.07 16 19 N -0.93 -54.35 13.96 21.66 0.30 -54.05 16 20 Si 0.96 38.16 27.74 68.60 1.90 40.06 16 21 H -0.26 -9.65 7.11 99.48 0.71 -8.95 16 22 H -0.27 -10.84 7.11 99.48 0.71 -10.14 16 23 H -0.23 -7.98 6.52 99.48 0.65 -7.33 16 24 C 0.14 2.53 6.26 86.53 0.54 3.07 16 25 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 26 H 0.08 0.42 8.14 -2.39 -0.02 0.40 16 27 H 0.09 0.37 8.14 -2.39 -0.02 0.35 16 28 H 0.43 1.90 9.10 -74.06 -0.67 1.23 16 29 H 0.12 1.09 7.86 -2.39 -0.02 1.07 16 30 H 0.07 1.41 6.92 -2.38 -0.02 1.40 16 31 H 0.08 1.49 6.83 -2.39 -0.02 1.48 16 32 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.41 13.10 5.77 -92.71 -0.54 12.57 16 34 H 0.10 3.11 8.14 -2.38 -0.02 3.09 16 35 H 0.11 3.19 8.14 -2.38 -0.02 3.17 16 36 H 0.39 15.19 5.76 -92.71 -0.53 14.66 16 37 H 0.28 15.09 8.31 -92.71 -0.77 14.32 16 38 H 0.10 1.47 7.68 -2.39 -0.02 1.45 16 39 H 0.06 1.42 7.55 -2.39 -0.02 1.40 16 Total: -1.00 -81.86 332.91 0.56 -81.30 By element: Atomic # 1 Polarization: 36.78 SS G_CDS: -0.68 Total: 36.10 kcal Atomic # 6 Polarization: 37.24 SS G_CDS: 6.42 Total: 43.65 kcal Atomic # 7 Polarization: -119.32 SS G_CDS: -6.64 Total: -125.96 kcal Atomic # 8 Polarization: -74.71 SS G_CDS: -0.44 Total: -75.15 kcal Atomic # 14 Polarization: 38.16 SS G_CDS: 1.90 Total: 40.06 kcal Total: -81.86 0.56 -81.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604499128.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.224 kcal (2) G-P(sol) polarization free energy of solvation -81.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds