Wall clock time and date at job start Tue Mar 31 2020 03:48:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.99882 * 2 1 4 4 C 1.54338 * 109.77860 * 121.16090 * 2 1 3 5 5 H 1.09004 * 110.51683 * 215.81190 * 4 2 1 6 6 C 1.50707 * 110.84955 * 339.03058 * 4 2 1 7 7 O 1.20823 * 119.99860 * 90.14564 * 6 4 2 8 8 O 1.34228 * 119.99972 * 270.14967 * 6 4 2 9 9 C 1.55157 * 103.02028 * 97.50028 * 4 2 1 10 10 C 1.54899 * 101.58136 * 35.30528 * 9 4 2 11 11 N 1.47016 * 109.88431 * 238.90175 * 2 1 3 12 12 C 1.34779 * 125.65019 * 59.56129 * 11 2 1 13 13 O 1.21585 * 119.99824 * 359.71712 * 12 11 2 14 14 N 1.34776 * 119.99748 * 179.71772 * 12 11 2 15 15 C 1.46504 * 119.99244 * 179.97438 * 14 12 11 16 16 C 1.50701 * 109.46738 * 179.97438 * 15 14 12 17 17 O 1.21290 * 119.99969 * 0.02562 * 16 15 14 18 18 N 1.34775 * 120.00269 * 179.97438 * 16 15 14 19 19 C 1.37099 * 120.00228 * 179.72444 * 18 16 15 20 20 H 1.07993 * 119.99842 * 0.28206 * 19 18 16 21 21 C 1.38956 * 119.99700 * 180.27567 * 19 18 16 22 22 N 1.31411 * 119.99459 * 180.02562 * 21 19 18 23 23 Si 1.86797 * 120.00314 * 0.02562 * 21 19 18 24 24 H 1.48497 * 109.46931 * 89.99877 * 23 21 19 25 25 H 1.48500 * 109.47207 * 210.00251 * 23 21 19 26 26 H 1.48500 * 109.47125 * 329.99987 * 23 21 19 27 27 H 1.08999 * 109.46761 * 182.84864 * 1 2 3 28 28 H 1.08999 * 109.47187 * 302.84717 * 1 2 3 29 29 H 1.09000 * 109.46960 * 62.85287 * 1 2 3 30 30 H 0.96704 * 116.99704 * 179.97438 * 8 6 4 31 31 H 1.09001 * 111.00096 * 277.23080 * 9 4 2 32 32 H 1.09000 * 111.03524 * 153.40260 * 9 4 2 33 33 H 1.09005 * 110.36889 * 204.15267 * 10 9 4 34 34 H 1.08999 * 110.46077 * 81.88018 * 10 9 4 35 35 H 0.96990 * 120.00283 * 359.97438 * 14 12 11 36 36 H 1.09001 * 109.47445 * 59.99962 * 15 14 12 37 37 H 1.09002 * 109.47192 * 299.99576 * 15 14 12 38 38 H 0.97000 * 119.99585 * 0.02562 * 18 16 15 39 39 H 0.96998 * 119.99617 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0523 -0.7515 1.2428 5 1 2.9606 -0.2814 1.6198 6 6 0.9963 -0.8117 2.3163 7 8 0.2223 -1.7388 2.3510 8 8 0.9156 0.1648 3.2338 9 6 2.3563 -2.1697 0.6916 10 6 2.8614 -1.8465 -0.7366 11 7 2.0301 -0.7141 -1.1838 12 6 1.7755 -0.3845 -2.4657 13 8 1.0730 0.5751 -2.7186 14 7 2.2995 -1.1188 -3.4670 15 6 2.0223 -0.7608 -4.8603 16 6 2.7209 -1.7319 -5.7769 17 8 3.3846 -2.6344 -5.3120 18 7 2.6073 -1.5982 -7.1132 19 6 3.2475 -2.4782 -7.9471 20 1 3.8390 -3.2813 -7.5332 21 6 3.1350 -2.3368 -9.3249 22 7 3.7482 -3.1806 -10.1241 23 14 2.1122 -0.9472 -10.0408 24 1 2.9705 0.2484 -10.2377 25 1 1.5465 -1.3711 -11.3467 26 1 1.0065 -0.6145 -9.1070 27 1 -0.3633 -1.0264 0.0511 28 1 -0.3633 0.5574 0.8634 29 1 -0.3633 0.4689 -0.9145 30 1 0.2217 0.0827 3.9023 31 1 1.4523 -2.7778 0.6581 32 1 3.1326 -2.6597 1.2792 33 1 2.7179 -2.7049 -1.3930 34 1 3.9126 -1.5594 -0.7131 35 1 2.8602 -1.8841 -3.2652 36 1 2.3856 0.2481 -5.0555 37 1 0.9477 -0.8010 -5.0389 38 1 2.0762 -0.8766 -7.4849 39 1 3.6700 -3.0817 -11.0859 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604625760.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:48:54 Heat of formation + Delta-G solvation = -145.407405 kcal Electronic energy + Delta-G solvation = -24261.511156 eV Core-core repulsion = 20397.597411 eV Total energy + Delta-G solvation = -3863.913745 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 299.136 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.31387 -40.03536 -38.61999 -37.59128 -36.42642 -34.57341 -33.83150 -32.22670 -31.77622 -31.47445 -27.90395 -26.83318 -24.58136 -23.59878 -23.10354 -20.45663 -19.84326 -19.58613 -18.83093 -18.41383 -17.93598 -17.13870 -16.37468 -16.08363 -15.86218 -15.44769 -15.12083 -14.85164 -14.45200 -14.18214 -13.77091 -13.68744 -13.33905 -13.12473 -12.90636 -12.71022 -12.50731 -12.42741 -12.18293 -12.07487 -11.91060 -11.80792 -11.31744 -11.24210 -11.21692 -10.83913 -10.64580 -10.08982 -10.05538 -9.70563 -9.06453 -8.78047 -8.60820 -8.31167 -6.41503 -3.94086 1.73843 2.32690 2.75022 2.99507 3.04205 3.12399 3.24589 3.56372 3.82816 3.97367 4.03175 4.16168 4.53097 4.56562 4.71158 4.87275 4.91074 5.06726 5.13572 5.23478 5.30456 5.40473 5.47166 5.62623 5.73909 5.76754 5.79056 5.84062 5.98587 6.10707 6.21243 6.60746 7.00917 7.44052 7.48081 7.99027 8.04632 8.43350 8.65952 8.80915 9.29099 9.62549 10.70644 Molecular weight = 299.14amu Principal moments of inertia in cm(-1) A = 0.039693 B = 0.002755 C = 0.002638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.242436 B =10160.774251 C =10613.553319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.175 3.825 3 H 0.088 0.912 4 C -0.097 4.097 5 H 0.120 0.880 6 C 0.497 3.503 7 O -0.507 6.507 8 O -0.515 6.515 9 C -0.118 4.118 10 C 0.097 3.903 11 N -0.635 5.635 12 C 0.727 3.273 13 O -0.591 6.591 14 N -0.722 5.722 15 C 0.126 3.874 16 C 0.439 3.561 17 O -0.580 6.580 18 N -0.576 5.576 19 C -0.310 4.310 20 H 0.122 0.878 21 C 0.045 3.955 22 N -0.874 5.874 23 Si 0.879 3.121 24 H -0.269 1.269 25 H -0.275 1.275 26 H -0.267 1.267 27 H 0.065 0.935 28 H 0.059 0.941 29 H 0.085 0.915 30 H 0.411 0.589 31 H 0.096 0.904 32 H 0.094 0.906 33 H 0.085 0.915 34 H 0.076 0.924 35 H 0.408 0.592 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.375 0.625 39 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.185 7.237 23.628 25.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.070 3.930 3 H 0.106 0.894 4 C -0.117 4.117 5 H 0.138 0.862 6 C 0.338 3.662 7 O -0.394 6.394 8 O -0.327 6.327 9 C -0.156 4.156 10 C -0.026 4.026 11 N -0.374 5.374 12 C 0.429 3.571 13 O -0.469 6.469 14 N -0.380 5.380 15 C -0.003 4.003 16 C 0.224 3.776 17 O -0.464 6.464 18 N -0.214 5.214 19 C -0.438 4.438 20 H 0.139 0.861 21 C -0.159 4.159 22 N -0.513 5.513 23 Si 0.705 3.295 24 H -0.194 1.194 25 H -0.200 1.200 26 H -0.192 1.192 27 H 0.084 0.916 28 H 0.078 0.922 29 H 0.104 0.896 30 H 0.270 0.730 31 H 0.115 0.885 32 H 0.112 0.888 33 H 0.104 0.896 34 H 0.094 0.906 35 H 0.246 0.754 36 H 0.102 0.898 37 H 0.102 0.898 38 H 0.208 0.792 39 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -4.118 7.046 23.079 24.479 hybrid contribution -0.922 0.579 -0.217 1.110 sum -5.040 7.625 22.862 24.621 Atomic orbital electron populations 1.22374 0.94411 1.03094 1.03646 1.21065 0.94935 0.95452 0.81532 0.89362 1.22142 0.97369 1.00251 0.91959 0.86237 1.22847 0.83766 0.78869 0.80692 1.90741 1.41342 1.34476 1.72823 1.84548 1.57583 1.49342 1.41240 1.22847 1.03641 0.94009 0.95077 1.22363 0.95234 0.89864 0.95134 1.47478 1.54190 1.32174 1.03580 1.15248 0.80341 0.82503 0.79017 1.90896 1.43289 1.30216 1.82532 1.44768 1.54998 1.33814 1.04373 1.20827 1.00759 0.98614 0.80081 1.19636 0.86651 0.88174 0.83091 1.90531 1.44843 1.35895 1.75135 1.42114 1.45491 1.28583 1.05168 1.19436 1.27579 1.09674 0.87150 0.86083 1.25069 0.97410 0.97629 0.95810 1.69618 1.41698 1.35748 1.04255 0.86667 0.80568 0.82341 0.79906 1.19386 1.19994 1.19186 0.91587 0.92217 0.89638 0.72974 0.88529 0.88789 0.89626 0.90589 0.75368 0.89777 0.89827 0.79214 0.91381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.99 8.11 37.16 0.30 -1.69 16 2 C 0.17 1.78 3.44 -66.95 -0.23 1.55 16 3 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 4 C -0.10 -0.73 3.37 -89.93 -0.30 -1.03 16 5 H 0.12 0.63 8.14 -51.93 -0.42 0.20 16 6 C 0.50 4.08 5.46 36.01 0.20 4.28 16 7 O -0.51 -5.62 15.76 -18.75 -0.30 -5.92 16 8 O -0.52 -3.03 13.42 -39.25 -0.53 -3.56 16 9 C -0.12 -0.88 6.39 -24.59 -0.16 -1.03 16 10 C 0.10 0.88 6.57 -2.53 -0.02 0.86 16 11 N -0.63 -7.66 3.08 -168.69 -0.52 -8.18 16 12 C 0.73 11.46 8.27 -86.92 -0.72 10.74 16 13 O -0.59 -10.91 15.18 5.29 0.08 -10.83 16 14 N -0.72 -11.69 5.49 -66.41 -0.36 -12.06 16 15 C 0.13 2.18 6.15 -5.19 -0.03 2.15 16 16 C 0.44 9.57 7.85 -10.99 -0.09 9.48 16 17 O -0.58 -14.46 15.24 5.55 0.08 -14.37 16 18 N -0.58 -13.31 5.09 -10.96 -0.06 -13.36 16 19 C -0.31 -8.49 10.16 -14.93 -0.15 -8.64 16 20 H 0.12 3.77 7.39 -52.49 -0.39 3.38 16 21 C 0.05 1.20 5.50 -17.47 -0.10 1.11 16 22 N -0.87 -24.87 13.96 55.50 0.77 -24.09 16 23 Si 0.88 18.94 27.74 -169.99 -4.71 14.22 16 24 H -0.27 -5.68 7.11 56.52 0.40 -5.27 16 25 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 26 H -0.27 -5.26 6.52 56.52 0.37 -4.89 16 27 H 0.07 0.80 7.45 -51.93 -0.39 0.42 16 28 H 0.06 0.57 7.25 -51.93 -0.38 0.19 16 29 H 0.08 1.16 6.64 -51.93 -0.34 0.82 16 30 H 0.41 0.79 9.10 45.56 0.41 1.21 16 31 H 0.10 0.88 7.22 -51.93 -0.37 0.51 16 32 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.09 0.81 7.30 -51.93 -0.38 0.43 16 34 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.41 6.49 5.92 -40.82 -0.24 6.25 16 36 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 37 H 0.08 1.38 8.14 -51.93 -0.42 0.95 16 38 H 0.37 7.64 5.76 -40.82 -0.24 7.41 16 39 H 0.28 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 328.16 15.07 4.95 4.95 Total: -1.00 -34.95 328.16 -5.90 -40.85 By element: Atomic # 1 Polarization: 18.60 SS G_CDS: -4.02 Total: 14.58 kcal Atomic # 6 Polarization: 19.06 SS G_CDS: -1.29 Total: 17.77 kcal Atomic # 7 Polarization: -57.52 SS G_CDS: -0.17 Total: -57.69 kcal Atomic # 8 Polarization: -34.02 SS G_CDS: -0.66 Total: -34.68 kcal Atomic # 14 Polarization: 18.94 SS G_CDS: -4.71 Total: 14.22 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -34.95 -5.90 -40.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604625760.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.556 kcal (2) G-P(sol) polarization free energy of solvation -34.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds