Wall clock time and date at job start Tue Mar 31 2020 03:48:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.99882 * 2 1 4 4 C 1.54338 * 109.77860 * 121.16090 * 2 1 3 5 5 H 1.09004 * 110.51683 * 215.81190 * 4 2 1 6 6 C 1.50707 * 110.84955 * 339.03058 * 4 2 1 7 7 O 1.20823 * 119.99860 * 90.14564 * 6 4 2 8 8 O 1.34228 * 119.99972 * 270.14967 * 6 4 2 9 9 C 1.55157 * 103.02028 * 97.50028 * 4 2 1 10 10 C 1.54899 * 101.58136 * 35.30528 * 9 4 2 11 11 N 1.47016 * 109.88431 * 238.90175 * 2 1 3 12 12 C 1.34779 * 125.65019 * 59.56129 * 11 2 1 13 13 O 1.21585 * 119.99824 * 359.71712 * 12 11 2 14 14 N 1.34776 * 119.99748 * 179.71772 * 12 11 2 15 15 C 1.46504 * 119.99244 * 179.97438 * 14 12 11 16 16 C 1.50701 * 109.46738 * 179.97438 * 15 14 12 17 17 O 1.21290 * 119.99969 * 0.02562 * 16 15 14 18 18 N 1.34775 * 120.00269 * 179.97438 * 16 15 14 19 19 C 1.37099 * 120.00228 * 179.72444 * 18 16 15 20 20 H 1.07993 * 119.99842 * 0.28206 * 19 18 16 21 21 C 1.38956 * 119.99700 * 180.27567 * 19 18 16 22 22 N 1.31411 * 119.99459 * 180.02562 * 21 19 18 23 23 Si 1.86797 * 120.00314 * 0.02562 * 21 19 18 24 24 H 1.48497 * 109.46931 * 89.99877 * 23 21 19 25 25 H 1.48500 * 109.47207 * 210.00251 * 23 21 19 26 26 H 1.48500 * 109.47125 * 329.99987 * 23 21 19 27 27 H 1.08999 * 109.46761 * 182.84864 * 1 2 3 28 28 H 1.08999 * 109.47187 * 302.84717 * 1 2 3 29 29 H 1.09000 * 109.46960 * 62.85287 * 1 2 3 30 30 H 0.96704 * 116.99704 * 179.97438 * 8 6 4 31 31 H 1.09001 * 111.00096 * 277.23080 * 9 4 2 32 32 H 1.09000 * 111.03524 * 153.40260 * 9 4 2 33 33 H 1.09005 * 110.36889 * 204.15267 * 10 9 4 34 34 H 1.08999 * 110.46077 * 81.88018 * 10 9 4 35 35 H 0.96990 * 120.00283 * 359.97438 * 14 12 11 36 36 H 1.09001 * 109.47445 * 59.99962 * 15 14 12 37 37 H 1.09002 * 109.47192 * 299.99576 * 15 14 12 38 38 H 0.97000 * 119.99585 * 0.02562 * 18 16 15 39 39 H 0.96998 * 119.99617 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0523 -0.7515 1.2428 5 1 2.9606 -0.2814 1.6198 6 6 0.9963 -0.8117 2.3163 7 8 0.2223 -1.7388 2.3510 8 8 0.9156 0.1648 3.2338 9 6 2.3563 -2.1697 0.6916 10 6 2.8614 -1.8465 -0.7366 11 7 2.0301 -0.7141 -1.1838 12 6 1.7755 -0.3845 -2.4657 13 8 1.0730 0.5751 -2.7186 14 7 2.2995 -1.1188 -3.4670 15 6 2.0223 -0.7608 -4.8603 16 6 2.7209 -1.7319 -5.7769 17 8 3.3846 -2.6344 -5.3120 18 7 2.6073 -1.5982 -7.1132 19 6 3.2475 -2.4782 -7.9471 20 1 3.8390 -3.2813 -7.5332 21 6 3.1350 -2.3368 -9.3249 22 7 3.7482 -3.1806 -10.1241 23 14 2.1122 -0.9472 -10.0408 24 1 2.9705 0.2484 -10.2377 25 1 1.5465 -1.3711 -11.3467 26 1 1.0065 -0.6145 -9.1070 27 1 -0.3633 -1.0264 0.0511 28 1 -0.3633 0.5574 0.8634 29 1 -0.3633 0.4689 -0.9145 30 1 0.2217 0.0827 3.9023 31 1 1.4523 -2.7778 0.6581 32 1 3.1326 -2.6597 1.2792 33 1 2.7179 -2.7049 -1.3930 34 1 3.9126 -1.5594 -0.7131 35 1 2.8602 -1.8841 -3.2652 36 1 2.3856 0.2481 -5.0555 37 1 0.9477 -0.8010 -5.0389 38 1 2.0762 -0.8766 -7.4849 39 1 3.6700 -3.0817 -11.0859 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604625760.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:48:53 Heat of formation + Delta-G solvation = -173.968362 kcal Electronic energy + Delta-G solvation = -24262.749652 eV Core-core repulsion = 20397.597411 eV Total energy + Delta-G solvation = -3865.152241 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 299.136 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.09046 -41.08688 -40.23832 -38.61047 -37.04458 -36.29359 -35.40143 -33.84483 -33.12010 -32.27186 -29.35479 -27.71194 -26.29839 -24.47579 -23.97320 -21.51075 -21.24226 -20.85267 -20.41633 -19.35418 -18.92638 -17.80514 -17.56151 -17.28443 -17.00024 -16.79096 -16.69570 -16.14050 -15.81339 -15.35312 -15.01716 -14.77547 -14.43722 -14.29321 -14.15083 -13.99307 -13.76531 -13.62787 -13.34605 -13.20194 -12.95697 -12.69238 -12.46257 -12.44162 -12.06298 -11.99988 -11.87283 -11.57624 -11.53435 -11.32373 -10.65227 -10.35340 -10.28293 -9.62790 -8.45147 -6.06972 1.07176 1.31745 1.34553 1.39572 1.45091 1.78837 2.02600 2.13775 2.20972 2.69371 3.02551 3.11265 3.29740 3.36955 3.87405 3.99022 4.06007 4.21103 4.23977 4.32337 4.39316 4.43788 4.48730 4.62953 4.66190 4.85057 4.91861 5.10656 5.13566 5.24969 5.32627 5.49645 5.62044 5.88076 5.93087 6.49149 6.78340 6.85689 6.99378 7.28305 7.45054 7.78280 8.71234 Molecular weight = 299.14amu Principal moments of inertia in cm(-1) A = 0.039693 B = 0.002755 C = 0.002638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.242436 B =10160.774251 C =10613.553319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.168 3.832 3 H 0.095 0.905 4 C -0.089 4.089 5 H 0.152 0.848 6 C 0.502 3.498 7 O -0.540 6.540 8 O -0.508 6.508 9 C -0.110 4.110 10 C 0.091 3.909 11 N -0.633 5.633 12 C 0.724 3.276 13 O -0.621 6.621 14 N -0.725 5.725 15 C 0.138 3.862 16 C 0.446 3.554 17 O -0.613 6.613 18 N -0.578 5.578 19 C -0.330 4.330 20 H 0.064 0.936 21 C -0.008 4.008 22 N -0.926 5.926 23 Si 0.958 3.042 24 H -0.256 1.256 25 H -0.274 1.274 26 H -0.233 1.233 27 H 0.051 0.949 28 H 0.075 0.925 29 H 0.058 0.942 30 H 0.429 0.571 31 H 0.076 0.924 32 H 0.124 0.876 33 H 0.077 0.923 34 H 0.097 0.903 35 H 0.409 0.591 36 H 0.104 0.896 37 H 0.100 0.900 38 H 0.392 0.608 39 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.845 9.469 25.244 27.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.065 3.935 3 H 0.113 0.887 4 C -0.108 4.108 5 H 0.170 0.830 6 C 0.345 3.655 7 O -0.430 6.430 8 O -0.322 6.322 9 C -0.148 4.148 10 C -0.031 4.031 11 N -0.371 5.371 12 C 0.426 3.574 13 O -0.502 6.502 14 N -0.383 5.383 15 C 0.010 3.990 16 C 0.234 3.766 17 O -0.499 6.499 18 N -0.218 5.218 19 C -0.459 4.459 20 H 0.082 0.918 21 C -0.208 4.208 22 N -0.565 5.565 23 Si 0.778 3.222 24 H -0.180 1.180 25 H -0.199 1.199 26 H -0.156 1.156 27 H 0.070 0.930 28 H 0.094 0.906 29 H 0.077 0.923 30 H 0.291 0.709 31 H 0.095 0.905 32 H 0.142 0.858 33 H 0.096 0.904 34 H 0.115 0.885 35 H 0.247 0.753 36 H 0.122 0.878 37 H 0.118 0.882 38 H 0.228 0.772 39 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -4.779 9.286 24.772 26.883 hybrid contribution -0.670 -0.182 -0.557 0.891 sum -5.449 9.104 24.214 26.437 Atomic orbital electron populations 1.22269 0.95460 1.02053 1.02949 1.21241 0.94139 0.96177 0.81980 0.88691 1.22157 0.98254 0.99879 0.90554 0.83014 1.22907 0.83185 0.78548 0.80865 1.90744 1.42582 1.35898 1.73781 1.84508 1.58277 1.48173 1.41260 1.22815 1.03655 0.94041 0.94311 1.22602 0.95918 0.88648 0.95883 1.47535 1.53868 1.32840 1.02841 1.15326 0.80065 0.82091 0.79910 1.90872 1.44558 1.31444 1.83295 1.44737 1.55379 1.34084 1.04130 1.20711 1.00940 0.97718 0.79664 1.20466 0.85196 0.87824 0.83128 1.90519 1.46036 1.37525 1.75858 1.41917 1.45954 1.28647 1.05246 1.19028 1.28637 1.09865 0.88392 0.91767 1.26060 0.98458 1.00720 0.95563 1.69779 1.43575 1.38287 1.04909 0.85450 0.79401 0.78109 0.79204 1.18027 1.19906 1.15647 0.92988 0.90625 0.92288 0.70896 0.90495 0.85813 0.90446 0.88499 0.75289 0.87768 0.88220 0.77220 0.90932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.67 8.11 71.98 0.58 -3.09 16 2 C 0.17 3.12 3.44 45.35 0.16 3.27 16 3 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 4 C -0.09 -1.08 3.37 -10.34 -0.03 -1.11 16 5 H 0.15 0.92 8.14 -2.39 -0.02 0.90 16 6 C 0.50 7.08 5.46 71.24 0.39 7.47 16 7 O -0.54 -11.29 15.76 21.97 0.35 -10.94 16 8 O -0.51 -4.49 13.42 -51.40 -0.69 -5.18 16 9 C -0.11 -1.39 6.39 31.98 0.20 -1.19 16 10 C 0.09 1.49 6.57 86.85 0.57 2.06 16 11 N -0.63 -14.39 3.08 -805.87 -2.48 -16.87 16 12 C 0.72 22.05 8.27 179.05 1.48 23.53 16 13 O -0.62 -22.30 15.18 -3.98 -0.06 -22.36 16 14 N -0.73 -22.78 5.49 -482.28 -2.65 -25.42 16 15 C 0.14 4.57 6.15 85.63 0.53 5.10 16 16 C 0.45 19.36 7.85 87.66 0.69 20.05 16 17 O -0.61 -31.28 15.24 -3.06 -0.05 -31.33 16 18 N -0.58 -26.44 5.09 -306.99 -1.56 -28.01 16 19 C -0.33 -18.65 10.16 84.04 0.85 -17.80 16 20 H 0.06 4.28 7.39 -2.91 -0.02 4.26 16 21 C -0.01 -0.43 5.50 84.93 0.47 0.03 16 22 N -0.93 -54.24 13.96 21.66 0.30 -53.93 16 23 Si 0.96 38.03 27.74 68.60 1.90 39.94 16 24 H -0.26 -9.66 7.11 99.48 0.71 -8.95 16 25 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 26 H -0.23 -7.92 6.52 99.48 0.65 -7.27 16 27 H 0.05 1.26 7.45 -2.39 -0.02 1.24 16 28 H 0.07 1.35 7.25 -2.39 -0.02 1.33 16 29 H 0.06 1.60 6.64 -2.39 -0.02 1.59 16 30 H 0.43 0.50 9.10 -74.05 -0.67 -0.17 16 31 H 0.08 1.32 7.22 -2.39 -0.02 1.31 16 32 H 0.12 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.08 1.40 7.30 -2.38 -0.02 1.39 16 34 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.41 12.81 5.92 -92.72 -0.55 12.26 16 36 H 0.10 3.11 8.14 -2.39 -0.02 3.09 16 37 H 0.10 3.05 8.14 -2.39 -0.02 3.03 16 38 H 0.39 15.08 5.76 -92.71 -0.53 14.55 16 39 H 0.28 15.05 8.31 -92.71 -0.77 14.28 16 Total: -1.00 -79.64 328.16 0.26 -79.38 By element: Atomic # 1 Polarization: 37.09 SS G_CDS: -0.69 Total: 36.40 kcal Atomic # 6 Polarization: 32.45 SS G_CDS: 5.89 Total: 38.33 kcal Atomic # 7 Polarization: -117.85 SS G_CDS: -6.39 Total: -124.24 kcal Atomic # 8 Polarization: -69.36 SS G_CDS: -0.45 Total: -69.81 kcal Atomic # 14 Polarization: 38.03 SS G_CDS: 1.90 Total: 39.94 kcal Total: -79.64 0.26 -79.38 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604625760.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.587 kcal (2) G-P(sol) polarization free energy of solvation -79.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds