Wall clock time and date at job start Tue Mar 31 2020 03:58:12
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52994 * 1
3 3 H 1.09007 * 109.47441 * 2 1
4 4 C 1.53003 * 109.47593 * 239.99782 * 2 1 3
5 5 N 1.46499 * 109.46708 * 64.99829 * 4 2 1
6 6 C 1.36935 * 119.99926 * 180.02562 * 5 4 2
7 7 H 1.08005 * 119.99877 * 359.97438 * 6 5 4
8 8 C 1.38811 * 120.00369 * 179.73019 * 6 5 4
9 9 N 1.31614 * 120.00468 * 180.02562 * 8 6 5
10 10 Si 1.86801 * 119.99699 * 359.97438 * 8 6 5
11 11 H 1.48504 * 109.47209 * 90.00536 * 10 8 6
12 12 H 1.48506 * 109.47294 * 210.00384 * 10 8 6
13 13 H 1.48501 * 109.47275 * 330.00287 * 10 8 6
14 14 C 1.52999 * 109.47313 * 119.99784 * 2 1 3
15 15 N 1.46498 * 109.47281 * 295.00596 * 14 2 1
16 16 C 1.34775 * 120.00533 * 179.97438 * 15 14 2
17 17 O 1.21285 * 119.99576 * 359.97438 * 16 15 14
18 18 C 1.50697 * 120.00168 * 179.97438 * 16 15 14
19 19 N 1.46504 * 109.46876 * 179.97438 * 18 16 15
20 20 C 1.36373 * 125.96291 * 269.69083 * 19 18 16
21 21 O 1.35633 * 125.98797 * 0.03509 * 20 19 18
22 22 N 1.30909 * 108.02701 * 179.88778 * 20 19 18
23 23 N 1.40115 * 107.93374 * 0.37213 * 22 20 19
24 24 C 1.30908 * 107.94480 * 359.76390 * 23 22 20
25 25 O 1.35625 * 125.99304 * 179.97438 * 24 23 22
26 26 H 1.09000 * 109.47110 * 180.02562 * 1 2 3
27 27 H 1.08995 * 109.47196 * 300.00119 * 1 2 3
28 28 H 1.09006 * 109.47245 * 60.00003 * 1 2 3
29 29 H 1.08998 * 109.46692 * 305.00331 * 4 2 1
30 30 H 1.08994 * 109.47584 * 185.00195 * 4 2 1
31 31 H 0.97005 * 120.00261 * 0.02562 * 5 4 2
32 32 H 0.97000 * 120.00663 * 179.97438 * 9 8 6
33 33 H 1.09000 * 109.46775 * 54.99966 * 14 2 1
34 34 H 1.08998 * 109.47583 * 174.99732 * 14 2 1
35 35 H 0.97002 * 120.00105 * 359.97438 * 15 14 2
36 36 H 1.09000 * 109.47269 * 299.99802 * 18 16 15
37 37 H 1.08994 * 109.47309 * 60.00191 * 18 16 15
38 38 H 0.96701 * 113.99674 * 90.00349 * 21 20 19
39 39 H 0.96699 * 113.99983 * 270.03031 * 25 24 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 1 1.8934 1.0277 0.0000
4 6 2.0401 -0.7213 -1.2492
5 7 1.6525 0.0353 -2.4423
6 6 2.0011 -0.4208 -3.6855
7 1 2.5623 -1.3382 -3.7864
8 6 1.6291 0.2931 -4.8163
9 7 1.9638 -0.1456 -6.0113
10 14 0.6521 1.8757 -4.6422
11 1 1.5865 3.0243 -4.5285
12 1 -0.2127 2.0574 -5.8358
13 1 -0.1942 1.8035 -3.4242
14 6 2.0400 -0.7212 1.2492
15 7 1.6523 0.0353 2.4424
16 6 1.9954 -0.4135 3.6660
17 8 2.6248 -1.4441 3.7794
18 6 1.5971 0.3651 4.8932
19 7 2.0844 -0.3262 6.0895
20 6 1.4046 -1.2696 6.8020
21 8 0.1597 -1.7324 6.5270
22 7 2.1653 -1.6525 7.7962
23 7 3.3635 -0.9296 7.7259
24 6 3.2945 -0.1343 6.6883
25 8 4.2574 0.7294 6.2806
26 1 -0.3633 -1.0277 0.0005
27 1 -0.3633 0.5138 0.8899
28 1 -0.3634 0.5139 -0.8900
29 1 1.6054 -1.7198 -1.2951
30 1 3.1263 -0.7995 -1.2055
31 1 1.1488 0.8594 -2.3517
32 1 1.7035 0.3530 -6.8015
33 1 1.6053 -1.7197 1.2952
34 1 3.1263 -0.7995 1.2056
35 1 1.1487 0.8594 2.3518
36 1 2.0324 1.3633 4.8474
37 1 0.5109 0.4440 4.9368
38 1 0.1466 -2.5006 5.9398
39 1 4.1852 1.6114 6.6703
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001666657425.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:58:12
Heat of formation + Delta-G solvation = -6.305158 kcal
Electronic energy + Delta-G solvation = -23795.024349 eV
Core-core repulsion = 19969.435281 eV
Total energy + Delta-G solvation = -3825.589068 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 299.143 amu
Computer time = 0.43 seconds
Orbital eigenvalues (eV)
-42.71428 -40.09326 -38.59993 -37.50493 -37.24455 -34.79050 -34.70979 -32.71698
-30.73517 -29.96848 -28.87386 -26.69329 -25.45752 -23.19974 -22.63016 -22.11527
-21.19331 -20.36707 -19.30754 -19.16959 -18.13775 -17.48792 -17.31670 -16.65471
-16.13781 -15.89740 -15.71116 -14.97191 -14.66647 -14.36046 -14.02564 -13.79078
-13.42959 -13.30986 -13.27207 -12.83037 -12.64912 -12.60026 -12.34239 -11.80229
-11.57825 -11.18624 -11.10556 -10.95243 -10.88737 -10.78823 -10.71572 -10.24185
-10.06423 -9.81497 -9.66036 -9.45664 -8.98942 -7.32634 -5.84084 -3.20641
1.01976 1.30173 1.83596 2.01987 2.62956 2.83555 3.27573 3.30420
3.32660 3.37611 3.87884 4.09234 4.29508 4.50641 4.66771 4.77948
4.79127 4.90456 5.05268 5.22883 5.44906 5.48805 5.58822 5.61944
5.67025 5.69523 5.87226 6.02790 6.12165 6.31026 6.52674 6.58983
6.60694 6.84101 6.99426 7.48947 7.66042 7.91349 8.34404 9.12723
9.84541 10.03612 11.34245
Molecular weight = 299.14amu
Principal moments of inertia in cm(-1)
A = 0.034127 B = 0.002484 C = 0.002453
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 820.264741 B =11267.224365 C =11413.455565
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.144 4.144
2 C -0.115 4.115
3 H 0.077 0.923
4 C 0.165 3.835
5 N -0.754 5.754
6 C -0.246 4.246
7 H 0.091 0.909
8 C 0.004 3.996
9 N -0.933 5.933
10 Si 0.886 3.114
11 H -0.284 1.284
12 H -0.290 1.290
13 H -0.278 1.278
14 C 0.127 3.873
15 N -0.717 5.717
16 C 0.494 3.506
17 O -0.524 6.524
18 C 0.081 3.919
19 N -0.498 5.498
20 C 0.416 3.584
21 O -0.438 6.438
22 N -0.293 5.293
23 N -0.295 5.295
24 C 0.418 3.582
25 O -0.432 6.432
26 H 0.058 0.942
27 H 0.044 0.956
28 H 0.065 0.935
29 H 0.031 0.969
30 H 0.030 0.970
31 H 0.361 0.639
32 H 0.260 0.740
33 H 0.073 0.927
34 H 0.074 0.926
35 H 0.403 0.597
36 H 0.127 0.873
37 H 0.131 0.869
38 H 0.416 0.584
39 H 0.411 0.589
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.308 5.461 25.513 26.444
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.202 4.202
2 C -0.134 4.134
3 H 0.096 0.904
4 C 0.037 3.963
5 N -0.400 5.400
6 C -0.376 4.376
7 H 0.108 0.892
8 C -0.192 4.192
9 N -0.580 5.580
10 Si 0.716 3.284
11 H -0.211 1.211
12 H -0.217 1.217
13 H -0.204 1.204
14 C 0.003 3.997
15 N -0.369 5.369
16 C 0.277 3.723
17 O -0.400 6.400
18 C -0.046 4.046
19 N -0.218 5.218
20 C 0.106 3.894
21 O -0.239 6.239
22 N -0.137 5.137
23 N -0.138 5.138
24 C 0.108 3.892
25 O -0.232 6.232
26 H 0.077 0.923
27 H 0.063 0.937
28 H 0.084 0.916
29 H 0.049 0.951
30 H 0.048 0.952
31 H 0.194 0.806
32 H 0.070 0.930
33 H 0.091 0.909
34 H 0.092 0.908
35 H 0.237 0.763
36 H 0.145 0.855
37 H 0.149 0.851
38 H 0.275 0.725
39 H 0.269 0.731
Dipole moment (debyes) X Y Z Total
from point charges -3.210 3.787 26.696 27.154
hybrid contribution -1.500 2.378 -1.662 3.266
sum -4.710 6.165 25.034 26.209
Atomic orbital electron populations
1.21828 0.94634 1.02353 1.01337 1.21619 0.96697 1.00605 0.94472
0.90445 1.20544 0.97277 0.94239 0.84242 1.42667 1.67732 1.27253
1.02333 1.19053 1.29508 1.07364 0.81695 0.89166 1.24688 1.00701
0.98671 0.95093 1.69695 1.51084 1.40308 0.96944 0.86541 0.80246
0.84756 0.76854 1.21077 1.21675 1.20432 1.21479 1.00619 0.95270
0.82289 1.45972 1.57305 1.27964 1.05650 1.20566 0.80515 0.86388
0.84811 1.90817 1.38876 1.23980 1.86316 1.21733 1.03432 0.97117
0.82359 1.46598 1.14733 1.36115 1.24395 1.21281 0.86461 0.90942
0.90683 1.84890 1.16861 1.51672 1.70448 1.78384 0.97547 1.19216
1.18506 1.78378 1.11991 1.09118 1.14361 1.21264 0.81008 0.96033
0.90936 1.85033 1.43012 1.25626 1.69490 0.92313 0.93705 0.91609
0.95134 0.95182 0.80639 0.92973 0.90877 0.90814 0.76253 0.85505
0.85119 0.72492 0.73120
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.65 8.94 37.15 0.33 -1.31 16
2 C -0.11 -1.40 2.46 -90.62 -0.22 -1.63 16
3 H 0.08 0.92 8.14 -51.92 -0.42 0.49 16
4 C 0.16 2.88 5.65 -4.04 -0.02 2.86 16
5 N -0.75 -16.81 5.13 -59.91 -0.31 -17.12 16
6 C -0.25 -6.78 10.47 -15.06 -0.16 -6.94 16
7 H 0.09 2.68 8.06 -52.48 -0.42 2.26 16
8 C 0.00 0.13 5.50 -17.43 -0.10 0.03 16
9 N -0.93 -28.80 13.97 55.49 0.78 -28.03 16
10 Si 0.89 21.22 27.73 -169.99 -4.71 16.50 16
11 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16
12 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16
13 H -0.28 -6.11 6.52 56.52 0.37 -5.75 16
14 C 0.13 1.35 5.06 -4.04 -0.02 1.33 16
15 N -0.72 -5.45 5.28 -60.30 -0.32 -5.77 16
16 C 0.49 4.34 7.90 -10.99 -0.09 4.25 16
17 O -0.52 -7.26 16.43 5.55 0.09 -7.17 16
18 C 0.08 0.41 6.49 -5.19 -0.03 0.37 16
19 N -0.50 -4.27 2.25 -121.35 -0.27 -4.54 16
20 C 0.42 4.18 9.15 -88.81 -0.81 3.36 16
21 O -0.44 -3.10 13.57 -18.60 -0.25 -3.35 16
22 N -0.29 -3.83 12.72 29.66 0.38 -3.45 16
23 N -0.29 -3.86 12.72 29.65 0.38 -3.48 16
24 C 0.42 4.20 9.15 -88.81 -0.81 3.39 16
25 O -0.43 -3.08 13.58 -18.57 -0.25 -3.33 16
26 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16
27 H 0.04 0.36 7.18 -51.93 -0.37 -0.01 16
28 H 0.06 0.91 7.18 -51.93 -0.37 0.54 16
29 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16
30 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16
31 H 0.36 7.71 4.72 -40.82 -0.19 7.52 16
32 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16
33 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16
34 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16
35 H 0.40 1.89 7.66 -40.82 -0.31 1.58 16
36 H 0.13 0.24 8.14 -51.93 -0.42 -0.19 16
37 H 0.13 0.31 8.14 -51.93 -0.42 -0.12 16
38 H 0.42 1.37 9.06 45.56 0.41 1.78 16
39 H 0.41 0.32 9.06 45.56 0.41 0.74 16
LS Contribution 341.27 15.07 5.14 5.14
Total: -1.00 -39.69 341.27 -4.69 -44.38
By element:
Atomic # 1 Polarization: 7.89 SS G_CDS: -3.40 Total: 4.49 kcal
Atomic # 6 Polarization: 7.66 SS G_CDS: -1.93 Total: 5.72 kcal
Atomic # 7 Polarization: -63.02 SS G_CDS: 0.63 Total: -62.39 kcal
Atomic # 8 Polarization: -13.44 SS G_CDS: -0.41 Total: -13.85 kcal
Atomic # 14 Polarization: 21.22 SS G_CDS: -4.71 Total: 16.50 kcal
Total LS contribution 5.14 Total: 5.14 kcal
Total: -39.69 -4.69 -44.38 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001666657425.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 38.075 kcal
(2) G-P(sol) polarization free energy of solvation -39.695 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.620 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.686 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.380 kcal
(6) G-S(sol) free energy of system = (1) + (5) -6.305 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.43 seconds