Wall clock time and date at job start Tue Mar 31 2020 03:58:12
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52994 * 1
3 3 H 1.09007 * 109.47441 * 2 1
4 4 C 1.53003 * 109.47593 * 239.99782 * 2 1 3
5 5 N 1.46499 * 109.46708 * 64.99829 * 4 2 1
6 6 C 1.36935 * 119.99926 * 180.02562 * 5 4 2
7 7 H 1.08005 * 119.99877 * 359.97438 * 6 5 4
8 8 C 1.38811 * 120.00369 * 179.73019 * 6 5 4
9 9 N 1.31614 * 120.00468 * 180.02562 * 8 6 5
10 10 Si 1.86801 * 119.99699 * 359.97438 * 8 6 5
11 11 H 1.48504 * 109.47209 * 90.00536 * 10 8 6
12 12 H 1.48506 * 109.47294 * 210.00384 * 10 8 6
13 13 H 1.48501 * 109.47275 * 330.00287 * 10 8 6
14 14 C 1.52999 * 109.47313 * 119.99784 * 2 1 3
15 15 N 1.46498 * 109.47281 * 295.00596 * 14 2 1
16 16 C 1.34775 * 120.00533 * 179.97438 * 15 14 2
17 17 O 1.21285 * 119.99576 * 359.97438 * 16 15 14
18 18 C 1.50697 * 120.00168 * 179.97438 * 16 15 14
19 19 N 1.46504 * 109.46876 * 179.97438 * 18 16 15
20 20 C 1.36373 * 125.96291 * 269.69083 * 19 18 16
21 21 O 1.35633 * 125.98797 * 0.03509 * 20 19 18
22 22 N 1.30909 * 108.02701 * 179.88778 * 20 19 18
23 23 N 1.40115 * 107.93374 * 0.37213 * 22 20 19
24 24 C 1.30908 * 107.94480 * 359.76390 * 23 22 20
25 25 O 1.35625 * 125.99304 * 179.97438 * 24 23 22
26 26 H 1.09000 * 109.47110 * 180.02562 * 1 2 3
27 27 H 1.08995 * 109.47196 * 300.00119 * 1 2 3
28 28 H 1.09006 * 109.47245 * 60.00003 * 1 2 3
29 29 H 1.08998 * 109.46692 * 305.00331 * 4 2 1
30 30 H 1.08994 * 109.47584 * 185.00195 * 4 2 1
31 31 H 0.97005 * 120.00261 * 0.02562 * 5 4 2
32 32 H 0.97000 * 120.00663 * 179.97438 * 9 8 6
33 33 H 1.09000 * 109.46775 * 54.99966 * 14 2 1
34 34 H 1.08998 * 109.47583 * 174.99732 * 14 2 1
35 35 H 0.97002 * 120.00105 * 359.97438 * 15 14 2
36 36 H 1.09000 * 109.47269 * 299.99802 * 18 16 15
37 37 H 1.08994 * 109.47309 * 60.00191 * 18 16 15
38 38 H 0.96701 * 113.99674 * 90.00349 * 21 20 19
39 39 H 0.96699 * 113.99983 * 270.03031 * 25 24 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 1 1.8934 1.0277 0.0000
4 6 2.0401 -0.7213 -1.2492
5 7 1.6525 0.0353 -2.4423
6 6 2.0011 -0.4208 -3.6855
7 1 2.5623 -1.3382 -3.7864
8 6 1.6291 0.2931 -4.8163
9 7 1.9638 -0.1456 -6.0113
10 14 0.6521 1.8757 -4.6422
11 1 1.5865 3.0243 -4.5285
12 1 -0.2127 2.0574 -5.8358
13 1 -0.1942 1.8035 -3.4242
14 6 2.0400 -0.7212 1.2492
15 7 1.6523 0.0353 2.4424
16 6 1.9954 -0.4135 3.6660
17 8 2.6248 -1.4441 3.7794
18 6 1.5971 0.3651 4.8932
19 7 2.0844 -0.3262 6.0895
20 6 1.4046 -1.2696 6.8020
21 8 0.1597 -1.7324 6.5270
22 7 2.1653 -1.6525 7.7962
23 7 3.3635 -0.9296 7.7259
24 6 3.2945 -0.1343 6.6883
25 8 4.2574 0.7294 6.2806
26 1 -0.3633 -1.0277 0.0005
27 1 -0.3633 0.5138 0.8899
28 1 -0.3634 0.5139 -0.8900
29 1 1.6054 -1.7198 -1.2951
30 1 3.1263 -0.7995 -1.2055
31 1 1.1488 0.8594 -2.3517
32 1 1.7035 0.3530 -6.8015
33 1 1.6053 -1.7197 1.2952
34 1 3.1263 -0.7995 1.2056
35 1 1.1487 0.8594 2.3518
36 1 2.0324 1.3633 4.8474
37 1 0.5109 0.4440 4.9368
38 1 0.1466 -2.5006 5.9398
39 1 4.1852 1.6114 6.6703
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001666657425.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:58:12
Heat of formation + Delta-G solvation = -45.983462 kcal
Electronic energy + Delta-G solvation = -23796.744930 eV
Core-core repulsion = 19969.435281 eV
Total energy + Delta-G solvation = -3827.309649 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 299.143 amu
Computer time = 0.45 seconds
Orbital eigenvalues (eV)
-43.38853 -40.84620 -39.16304 -38.40564 -38.06778 -36.13217 -35.38856 -34.21883
-32.47158 -30.70964 -29.55227 -27.82254 -26.75941 -24.04763 -23.88976 -23.10738
-21.92409 -21.52333 -19.96685 -19.86451 -19.53186 -18.52565 -18.00383 -17.32740
-17.02106 -16.68339 -16.45447 -16.30582 -15.84937 -15.56081 -15.22350 -14.89149
-14.49809 -14.31604 -13.95847 -13.91797 -13.67833 -13.40483 -13.38020 -13.18995
-12.87193 -12.56276 -12.18697 -12.13509 -12.02036 -11.86846 -11.76278 -11.66048
-11.60802 -10.99084 -10.81468 -10.56650 -10.22018 -9.31292 -8.03294 -5.37971
0.37566 0.71891 1.12251 1.36910 1.39204 1.43104 1.50512 1.98384
2.20452 2.48772 2.83884 3.27881 3.46603 3.50075 3.56741 3.92745
4.00370 4.05541 4.11948 4.15941 4.25238 4.51053 4.64905 4.67863
4.75592 4.92496 5.02871 5.08964 5.21487 5.23838 5.33767 5.46604
5.74568 6.18760 6.20035 6.35596 6.45658 6.77198 7.07182 7.07513
7.81906 8.02986 9.18380
Molecular weight = 299.14amu
Principal moments of inertia in cm(-1)
A = 0.034127 B = 0.002484 C = 0.002453
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 820.264741 B =11267.224365 C =11413.455565
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.142 4.142
2 C -0.097 4.097
3 H 0.092 0.908
4 C 0.157 3.843
5 N -0.753 5.753
6 C -0.239 4.239
7 H 0.050 0.950
8 C -0.069 4.069
9 N -0.986 5.986
10 Si 0.961 3.039
11 H -0.276 1.276
12 H -0.298 1.298
13 H -0.242 1.242
14 C 0.138 3.862
15 N -0.700 5.700
16 C 0.495 3.505
17 O -0.581 6.581
18 C 0.084 3.916
19 N -0.495 5.495
20 C 0.424 3.576
21 O -0.433 6.433
22 N -0.340 5.340
23 N -0.343 5.343
24 C 0.427 3.573
25 O -0.435 6.435
26 H 0.051 0.949
27 H 0.087 0.913
28 H 0.045 0.955
29 H 0.022 0.978
30 H 0.021 0.979
31 H 0.369 0.631
32 H 0.258 0.742
33 H 0.064 0.936
34 H 0.057 0.943
35 H 0.422 0.578
36 H 0.168 0.832
37 H 0.168 0.832
38 H 0.432 0.568
39 H 0.437 0.563
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.264 8.422 27.228 29.181
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.199 4.199
2 C -0.116 4.116
3 H 0.110 0.890
4 C 0.030 3.970
5 N -0.399 5.399
6 C -0.370 4.370
7 H 0.068 0.932
8 C -0.260 4.260
9 N -0.637 5.637
10 Si 0.787 3.213
11 H -0.202 1.202
12 H -0.225 1.225
13 H -0.166 1.166
14 C 0.013 3.987
15 N -0.353 5.353
16 C 0.280 3.720
17 O -0.460 6.460
18 C -0.041 4.041
19 N -0.215 5.215
20 C 0.113 3.887
21 O -0.236 6.236
22 N -0.184 5.184
23 N -0.187 5.187
24 C 0.116 3.884
25 O -0.239 6.239
26 H 0.070 0.930
27 H 0.106 0.894
28 H 0.064 0.936
29 H 0.040 0.960
30 H 0.039 0.961
31 H 0.203 0.797
32 H 0.067 0.933
33 H 0.082 0.918
34 H 0.075 0.925
35 H 0.260 0.740
36 H 0.186 0.814
37 H 0.185 0.815
38 H 0.294 0.706
39 H 0.301 0.699
Dipole moment (debyes) X Y Z Total
from point charges -5.197 6.797 28.462 29.720
hybrid contribution -0.825 1.377 -2.242 2.757
sum -6.022 8.174 26.219 28.116
Atomic orbital electron populations
1.21820 0.93363 1.02341 1.02414 1.21397 0.97520 1.00544 0.92166
0.88976 1.20720 0.96848 0.94229 0.85183 1.42601 1.67658 1.27867
1.01811 1.19020 1.28069 1.05813 0.84139 0.93158 1.25629 1.02669
1.03192 0.94490 1.69904 1.53288 1.42461 0.98027 0.85327 0.78767
0.79323 0.77833 1.20226 1.22519 1.16624 1.21115 0.99509 0.95141
0.82942 1.45713 1.56971 1.28215 1.04422 1.21205 0.79207 0.85723
0.85818 1.90814 1.41488 1.26642 1.87096 1.22115 1.05810 0.97402
0.78804 1.46641 1.14030 1.35845 1.24965 1.21321 0.86729 0.90521
0.90162 1.84872 1.15218 1.52489 1.71021 1.78242 0.98451 1.20898
1.20771 1.78240 1.12803 1.10844 1.16835 1.21304 0.81458 0.95512
0.90093 1.85000 1.42245 1.27064 1.69625 0.92984 0.89440 0.93624
0.96010 0.96116 0.79650 0.93306 0.91792 0.92466 0.73953 0.81419
0.81451 0.70569 0.69927
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.70 8.94 71.98 0.64 -2.06 16
2 C -0.10 -2.10 2.46 -10.80 -0.03 -2.13 16
3 H 0.09 1.79 8.14 -2.38 -0.02 1.77 16
4 C 0.16 5.39 5.65 86.38 0.49 5.88 16
5 N -0.75 -32.83 5.13 -343.46 -1.76 -34.59 16
6 C -0.24 -13.40 10.47 84.03 0.88 -12.52 16
7 H 0.05 3.14 8.06 -2.91 -0.02 3.12 16
8 C -0.07 -3.96 5.50 84.86 0.47 -3.49 16
9 N -0.99 -62.68 13.97 21.65 0.30 -62.38 16
10 Si 0.96 43.10 27.73 68.60 1.90 45.00 16
11 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16
12 H -0.30 -13.72 7.11 99.48 0.71 -13.02 16
13 H -0.24 -9.32 6.52 99.48 0.65 -8.67 16
14 C 0.14 2.63 5.06 86.38 0.44 3.07 16
15 N -0.70 -7.82 5.28 -463.07 -2.45 -10.26 16
16 C 0.50 7.04 7.90 87.66 0.69 7.73 16
17 O -0.58 -15.25 16.43 -3.05 -0.05 -15.30 16
18 C 0.08 0.45 6.49 85.63 0.56 1.01 16
19 N -0.49 -7.21 2.25 -759.27 -1.71 -8.91 16
20 C 0.42 7.87 9.15 179.71 1.65 9.51 16
21 O -0.43 -5.16 13.57 -89.46 -1.21 -6.37 16
22 N -0.34 -8.90 12.72 -173.65 -2.21 -11.10 16
23 N -0.34 -8.98 12.72 -173.66 -2.21 -11.19 16
24 C 0.43 7.93 9.15 179.71 1.65 9.58 16
25 O -0.44 -5.18 13.58 -89.38 -1.21 -6.39 16
26 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16
27 H 0.09 0.92 7.18 -2.39 -0.02 0.91 16
28 H 0.04 1.08 7.18 -2.38 -0.02 1.06 16
29 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16
30 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16
31 H 0.37 14.77 4.72 -92.70 -0.44 14.33 16
32 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16
33 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16
34 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16
35 H 0.42 1.53 7.66 -92.71 -0.71 0.82 16
36 H 0.17 -0.41 8.14 -2.39 -0.02 -0.42 16
37 H 0.17 -0.24 8.14 -2.39 -0.02 -0.26 16
38 H 0.43 1.98 9.06 -74.06 -0.67 1.31 16
39 H 0.44 -0.65 9.06 -74.06 -0.67 -1.32 16
Total: -1.00 -91.99 341.27 -4.59 -96.58
By element:
Atomic # 1 Polarization: 9.76 SS G_CDS: -1.41 Total: 8.35 kcal
Atomic # 6 Polarization: 9.15 SS G_CDS: 7.43 Total: 16.58 kcal
Atomic # 7 Polarization: -128.41 SS G_CDS: -10.03 Total: -138.44 kcal
Atomic # 8 Polarization: -25.59 SS G_CDS: -2.48 Total: -28.07 kcal
Atomic # 14 Polarization: 43.10 SS G_CDS: 1.90 Total: 45.00 kcal
Total: -91.99 -4.59 -96.58 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001666657425.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 50.595 kcal
(2) G-P(sol) polarization free energy of solvation -91.991 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.395 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.588 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.579 kcal
(6) G-S(sol) free energy of system = (1) + (5) -45.983 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.45 seconds