Wall clock time and date at job start Tue Mar 31 2020 03:58:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47165 * 2 1 4 4 C 1.52997 * 109.46729 * 119.99871 * 2 1 3 5 5 N 1.46506 * 109.47289 * 294.99928 * 4 2 1 6 6 C 1.36930 * 120.00258 * 180.02562 * 5 4 2 7 7 H 1.08004 * 119.99823 * 0.02562 * 6 5 4 8 8 C 1.38815 * 120.00439 * 179.97438 * 6 5 4 9 9 N 1.31618 * 119.99225 * 0.02562 * 8 6 5 10 10 Si 1.86794 * 120.00268 * 179.97438 * 8 6 5 11 11 H 1.48496 * 109.46935 * 90.00259 * 10 8 6 12 12 H 1.48507 * 109.47218 * 210.00042 * 10 8 6 13 13 H 1.48492 * 109.47204 * 330.00019 * 10 8 6 14 14 C 1.53001 * 109.47347 * 239.99678 * 2 1 3 15 15 N 1.46503 * 109.47149 * 65.00153 * 14 2 1 16 16 C 1.34769 * 119.99831 * 179.97438 * 15 14 2 17 17 O 1.21280 * 120.00233 * 0.02562 * 16 15 14 18 18 C 1.50702 * 119.99882 * 180.02562 * 16 15 14 19 19 N 1.46494 * 109.47495 * 180.02562 * 18 16 15 20 20 C 1.36373 * 125.96532 * 269.68991 * 19 18 16 21 21 O 1.35635 * 125.98625 * 0.03964 * 20 19 18 22 22 N 1.30906 * 108.02901 * 179.88196 * 20 19 18 23 23 N 1.40116 * 107.93569 * 0.37662 * 22 20 19 24 24 C 1.30913 * 107.94197 * 359.75940 * 23 22 20 25 25 O 1.35625 * 125.99019 * 179.97438 * 24 23 22 26 26 H 1.09004 * 109.46683 * 60.00598 * 1 2 3 27 27 H 1.09002 * 109.47620 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47757 * 300.00616 * 1 2 3 29 29 H 1.09001 * 109.47289 * 174.99800 * 4 2 1 30 30 H 1.09004 * 109.47261 * 55.00056 * 4 2 1 31 31 H 0.97001 * 119.99251 * 0.02562 * 5 4 2 32 32 H 0.97000 * 119.99950 * 179.97438 * 9 8 6 33 33 H 1.08995 * 109.47104 * 185.00632 * 14 2 1 34 34 H 1.09005 * 109.47062 * 305.00281 * 14 2 1 35 35 H 0.97002 * 119.99560 * 359.97438 * 15 14 2 36 36 H 1.09005 * 109.47433 * 300.00035 * 18 16 15 37 37 H 1.09000 * 109.47417 * 59.99690 * 18 16 15 38 38 H 0.96698 * 113.99840 * 89.99432 * 21 20 19 39 39 H 0.96704 * 114.00044 * 270.02797 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 1.6523 0.0354 2.4424 6 6 2.0017 -0.4201 3.6856 7 1 2.5634 -1.3371 3.7865 8 6 1.6349 0.2971 4.8161 9 7 0.9509 1.4147 4.6930 10 14 2.1110 -0.3248 6.5119 11 1 3.4337 0.2338 6.8906 12 1 1.0904 0.1052 7.5014 13 1 2.1872 -1.8076 6.4920 14 6 2.0401 -0.7213 -1.2492 15 7 1.6526 0.0352 -2.4424 16 6 1.9966 -0.4132 -3.6658 17 8 2.6266 -1.4434 -3.7791 18 6 1.5985 0.3653 -4.8932 19 7 2.0867 -0.3254 -6.0893 20 6 3.2946 -0.1284 -6.6909 21 8 4.2543 0.7405 -6.2862 22 7 3.3671 -0.9272 -7.7255 23 7 2.1697 -1.6516 -7.7960 24 6 1.4103 -1.2733 -6.7990 25 8 0.1682 -1.7417 -6.5209 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 3.1262 -0.7995 1.2057 30 1 1.6052 -1.7198 1.2952 31 1 1.1481 0.8591 2.3517 32 1 0.6942 1.9158 5.4829 33 1 3.1263 -0.7996 -1.2054 34 1 1.6054 -1.7199 -1.2951 35 1 1.1483 0.8590 -2.3518 36 1 0.5122 0.4436 -4.9374 37 1 2.0331 1.3638 -4.8470 38 1 4.8881 0.3632 -5.6610 39 1 -0.5438 -1.2461 -6.9483 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001666657426.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:58:14 Heat of formation + Delta-G solvation = -48.780034 kcal Electronic energy + Delta-G solvation = -23720.368338 eV Core-core repulsion = 19892.937421 eV Total energy + Delta-G solvation = -3827.430917 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 299.143 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.38517 -40.83837 -39.15793 -38.30518 -38.06221 -36.04731 -35.38450 -34.16825 -31.99204 -30.70483 -29.51567 -27.65800 -26.73319 -24.37684 -23.88444 -23.11585 -21.91353 -21.36165 -19.86120 -19.83587 -19.21894 -18.49179 -17.98609 -17.31212 -16.99493 -16.72791 -16.46142 -16.25370 -15.75964 -15.48424 -15.28661 -14.81379 -14.50551 -14.24829 -13.92865 -13.79699 -13.57774 -13.37420 -13.34687 -12.96348 -12.81896 -12.56059 -12.19964 -12.17551 -12.01037 -11.88606 -11.67251 -11.66675 -11.60652 -10.95411 -10.80873 -10.56114 -10.21423 -9.00244 -7.97011 -5.24743 0.37909 0.72283 1.12379 1.39384 1.47637 1.48206 1.56750 1.99344 2.20887 2.55541 2.84130 3.37080 3.47046 3.54078 3.71067 3.95565 4.06077 4.06536 4.15655 4.25568 4.34094 4.53841 4.65645 4.69483 4.75702 4.93820 5.05094 5.11975 5.21734 5.26311 5.38636 5.48478 5.49830 6.19046 6.26259 6.36079 6.46017 6.77369 7.06679 7.33443 8.08616 8.32706 9.26321 Molecular weight = 299.14amu Principal moments of inertia in cm(-1) A = 0.037187 B = 0.002334 C = 0.002289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.762548 B =11992.251729 C =12231.588586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.093 4.093 3 H 0.084 0.916 4 C 0.155 3.845 5 N -0.741 5.741 6 C -0.247 4.247 7 H 0.072 0.928 8 C -0.072 4.072 9 N -0.966 5.966 10 Si 0.970 3.030 11 H -0.287 1.287 12 H -0.294 1.294 13 H -0.272 1.272 14 C 0.140 3.860 15 N -0.701 5.701 16 C 0.496 3.504 17 O -0.581 6.581 18 C 0.085 3.915 19 N -0.495 5.495 20 C 0.423 3.577 21 O -0.433 6.433 22 N -0.339 5.339 23 N -0.343 5.343 24 C 0.428 3.572 25 O -0.435 6.435 26 H 0.083 0.917 27 H 0.048 0.952 28 H 0.040 0.960 29 H 0.018 0.982 30 H 0.018 0.982 31 H 0.377 0.623 32 H 0.252 0.748 33 H 0.061 0.939 34 H 0.060 0.940 35 H 0.421 0.579 36 H 0.169 0.831 37 H 0.166 0.834 38 H 0.432 0.568 39 H 0.437 0.563 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.727 2.914 -22.693 23.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.112 4.112 3 H 0.102 0.898 4 C 0.028 3.972 5 N -0.384 5.384 6 C -0.379 4.379 7 H 0.090 0.910 8 C -0.265 4.265 9 N -0.617 5.617 10 Si 0.800 3.200 11 H -0.214 1.214 12 H -0.221 1.221 13 H -0.197 1.197 14 C 0.015 3.985 15 N -0.354 5.354 16 C 0.281 3.719 17 O -0.460 6.460 18 C -0.041 4.041 19 N -0.215 5.215 20 C 0.112 3.888 21 O -0.237 6.237 22 N -0.183 5.183 23 N -0.187 5.187 24 C 0.117 3.883 25 O -0.239 6.239 26 H 0.102 0.898 27 H 0.067 0.933 28 H 0.060 0.940 29 H 0.036 0.964 30 H 0.036 0.964 31 H 0.210 0.790 32 H 0.061 0.939 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.259 0.741 36 H 0.186 0.814 37 H 0.184 0.816 38 H 0.294 0.706 39 H 0.301 0.699 Dipole moment (debyes) X Y Z Total from point charges -1.691 1.307 -23.942 24.038 hybrid contribution -0.562 0.899 2.697 2.898 sum -2.253 2.206 -21.245 21.478 Atomic orbital electron populations 1.21746 0.93744 1.01856 1.02059 1.21333 0.97238 1.00215 0.92459 0.89757 1.20741 0.96493 0.94102 0.85896 1.42491 1.66774 1.27867 1.01288 1.19600 1.27828 1.05289 0.85150 0.91034 1.25506 1.01684 0.97922 1.01391 1.69785 1.44967 1.17823 1.29139 0.85186 0.77006 0.77913 0.79934 1.21408 1.22060 1.19739 1.21121 0.99593 0.94926 0.82878 1.45744 1.56926 1.28177 1.04514 1.21190 0.79390 0.85564 0.85750 1.90803 1.41867 1.26301 1.87063 1.22102 1.05969 0.97180 0.78865 1.46644 1.16035 1.33703 1.25101 1.21330 0.84131 0.92167 0.91161 1.84872 1.38664 1.33516 1.66615 1.78240 1.13222 1.08046 1.18788 1.78238 1.00015 1.21523 1.18883 1.21303 0.89635 0.87823 0.89562 1.84998 1.10100 1.55516 1.73270 0.89826 0.93295 0.94037 0.96362 0.96442 0.78967 0.93922 0.92023 0.92134 0.74056 0.81370 0.81627 0.70580 0.69916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.24 8.94 71.98 0.64 -2.60 16 2 C -0.09 -2.36 2.46 -10.79 -0.03 -2.38 16 3 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 4 C 0.15 5.68 5.65 86.38 0.49 6.17 16 5 N -0.74 -35.55 5.33 -343.44 -1.83 -37.38 16 6 C -0.25 -13.44 9.99 84.04 0.84 -12.60 16 7 H 0.07 3.79 7.83 -2.91 -0.02 3.77 16 8 C -0.07 -4.06 5.50 84.86 0.47 -3.59 16 9 N -0.97 -57.12 13.06 21.65 0.28 -56.84 16 10 Si 0.97 45.17 29.55 68.60 2.03 47.19 16 11 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 12 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 13 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 14 C 0.14 2.97 5.06 86.38 0.44 3.41 16 15 N -0.70 -9.41 5.28 -463.06 -2.45 -11.85 16 16 C 0.50 7.82 7.90 87.66 0.69 8.51 16 17 O -0.58 -15.88 16.43 -3.03 -0.05 -15.93 16 18 C 0.08 0.58 6.49 85.63 0.56 1.14 16 19 N -0.49 -7.71 2.25 -759.26 -1.71 -9.41 16 20 C 0.42 8.28 9.15 179.72 1.65 9.92 16 21 O -0.43 -5.71 13.58 -89.48 -1.21 -6.93 16 22 N -0.34 -9.11 12.72 -173.65 -2.21 -11.32 16 23 N -0.34 -9.14 12.72 -173.65 -2.21 -11.35 16 24 C 0.43 8.21 9.15 179.71 1.65 9.85 16 25 O -0.43 -5.36 13.58 -89.38 -1.21 -6.57 16 26 H 0.08 1.27 7.18 -2.39 -0.02 1.25 16 27 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 28 H 0.04 1.26 7.18 -2.39 -0.02 1.24 16 29 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.02 0.67 8.14 -2.38 -0.02 0.65 16 31 H 0.38 18.87 6.85 -92.71 -0.63 18.24 16 32 H 0.25 14.44 8.31 -92.71 -0.77 13.67 16 33 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.06 1.46 8.14 -2.38 -0.02 1.44 16 35 H 0.42 2.76 7.65 -92.71 -0.71 2.05 16 36 H 0.17 -0.18 8.14 -2.38 -0.02 -0.20 16 37 H 0.17 0.09 8.14 -2.39 -0.02 0.07 16 38 H 0.43 2.54 9.06 -74.06 -0.67 1.87 16 39 H 0.44 -0.46 9.06 -74.05 -0.67 -1.13 16 Total: -1.00 -86.43 344.38 -4.73 -91.16 By element: Atomic # 1 Polarization: 12.95 SS G_CDS: -1.55 Total: 11.40 kcal Atomic # 6 Polarization: 10.43 SS G_CDS: 7.39 Total: 17.82 kcal Atomic # 7 Polarization: -128.03 SS G_CDS: -10.12 Total: -138.15 kcal Atomic # 8 Polarization: -26.95 SS G_CDS: -2.48 Total: -29.43 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.19 kcal Total: -86.43 -4.73 -91.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666657426.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.380 kcal (2) G-P(sol) polarization free energy of solvation -86.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds