Wall clock time and date at job start Tue Mar 31 2020 03:39:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45208 * 1 3 3 C 1.34221 * 117.00041 * 2 1 4 4 O 1.20831 * 119.99972 * 0.02562 * 3 2 1 5 5 C 1.50700 * 120.00025 * 180.02562 * 3 2 1 6 6 N 1.46506 * 109.47198 * 180.02562 * 5 3 2 7 7 C 1.37103 * 119.99722 * 270.00160 * 6 5 3 8 8 H 1.07998 * 119.99653 * 202.98693 * 7 6 5 9 9 C 1.38949 * 119.99889 * 22.99622 * 7 6 5 10 10 N 1.31407 * 120.00589 * 351.27716 * 9 7 6 11 11 Si 1.86804 * 119.99819 * 171.28490 * 9 7 6 12 12 H 1.48508 * 109.46940 * 59.99340 * 11 9 7 13 13 H 1.48498 * 109.47278 * 179.97438 * 11 9 7 14 14 H 1.48501 * 109.46817 * 299.99646 * 11 9 7 15 15 C 1.34767 * 119.99933 * 89.99664 * 6 5 3 16 16 O 1.21294 * 120.00447 * 355.03939 * 15 6 5 17 17 C 1.50706 * 120.00038 * 175.03329 * 15 6 5 18 18 C 1.52994 * 109.47308 * 184.98881 * 17 15 6 19 19 C 1.53000 * 109.47390 * 180.02562 * 18 17 15 20 20 H 1.08999 * 110.33010 * 54.29837 * 19 18 17 21 21 C 1.54475 * 110.37565 * 176.55182 * 19 18 17 22 22 C 1.54680 * 103.98080 * 142.73913 * 21 19 18 23 23 C 1.54482 * 104.08153 * 0.13397 * 22 21 19 24 24 H 1.08996 * 110.36884 * 94.75877 * 23 22 21 25 25 C 1.52992 * 110.37334 * 217.10299 * 23 22 21 26 26 O 1.44424 * 110.37178 * 292.05204 * 19 18 17 27 27 H 1.09005 * 109.46841 * 299.99467 * 1 2 3 28 28 H 1.08988 * 109.47207 * 59.99629 * 1 2 3 29 29 H 1.09002 * 109.47068 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47399 * 300.00075 * 5 3 2 31 31 H 1.08998 * 109.47103 * 60.00312 * 5 3 2 32 32 H 0.96993 * 120.00681 * 185.01484 * 10 9 7 33 33 H 1.08997 * 109.47183 * 304.99432 * 17 15 6 34 34 H 1.09004 * 109.46821 * 64.99175 * 17 15 6 35 35 H 1.08997 * 109.47448 * 300.00389 * 18 17 15 36 36 H 1.09004 * 109.46940 * 60.00366 * 18 17 15 37 37 H 1.09006 * 110.51136 * 261.45509 * 21 19 18 38 38 H 1.09003 * 110.51318 * 24.16213 * 21 19 18 39 39 H 1.09003 * 110.58231 * 241.44801 * 22 21 19 40 40 H 1.09003 * 110.42900 * 118.74641 * 22 21 19 41 41 H 1.09004 * 109.47274 * 176.83698 * 25 23 22 42 42 H 1.09007 * 109.47249 * 296.82675 * 25 23 22 43 43 H 1.08996 * 109.47792 * 56.83364 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5664 1.2748 -0.0006 6 7 3.9818 2.6797 0.0002 7 6 4.1756 3.3378 -1.1869 8 1 4.8139 4.2082 -1.2237 9 6 3.5507 2.8850 -2.3424 10 7 2.9153 1.7348 -2.3382 11 14 3.6141 3.9113 -3.9019 12 1 5.0288 4.1037 -4.3107 13 1 2.8770 3.2121 -4.9850 14 1 2.9874 5.2338 -3.6499 15 6 4.1733 3.3251 1.1676 16 8 3.9156 2.7720 2.2159 17 6 4.7078 4.7342 1.1708 18 6 4.9473 5.1856 2.6129 19 6 5.4894 6.6164 2.6161 20 1 4.8237 7.2748 2.0580 21 6 5.6575 7.1245 4.0652 22 6 6.9511 7.9712 4.0165 23 6 7.4074 7.8761 2.5437 24 1 7.0363 8.7292 1.9758 25 6 8.9334 7.8037 2.4625 26 8 6.8191 6.6515 2.0536 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5138 -0.8898 29 1 -0.3633 -1.0277 0.0005 30 1 3.9565 0.7805 0.8891 31 1 3.9557 0.7809 -0.8908 32 1 2.5417 1.3840 -3.1617 33 1 5.6470 4.7678 0.6187 34 1 3.9843 5.3983 0.6977 35 1 4.0081 5.1520 3.1649 36 1 5.6708 4.5216 3.0860 37 1 4.8063 7.7406 4.3552 38 1 5.7755 6.2867 4.7525 39 1 7.7086 7.5521 4.6788 40 1 6.7386 9.0062 4.2845 41 1 9.2365 7.6806 1.4227 42 1 9.3625 8.7238 2.8594 43 1 9.2886 6.9553 3.0474 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075201223.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:39:17 Heat of formation + Delta-G solvation = -186.436563 kcal Electronic energy + Delta-G solvation = -25278.161703 eV Core-core repulsion = 21516.009143 eV Total energy + Delta-G solvation = -3762.152560 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.161 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.35298 -40.60036 -40.01461 -37.35950 -36.50226 -34.78487 -33.46364 -33.10099 -31.70771 -30.21932 -28.08962 -27.32081 -26.19810 -23.86291 -22.35365 -21.85640 -21.64147 -21.05639 -18.83415 -18.44934 -18.04286 -17.42839 -17.26133 -16.95298 -16.91645 -16.21098 -16.03082 -15.78866 -15.63148 -14.69412 -14.54098 -14.37213 -14.23696 -14.01817 -13.68984 -13.42596 -13.21564 -13.06048 -12.96534 -12.89564 -12.74085 -12.50128 -12.48415 -12.31098 -12.12477 -11.96924 -11.70003 -11.60272 -11.57601 -11.46199 -11.45054 -10.92729 -10.61110 -10.47613 -9.88944 -8.32698 -6.01151 1.41180 1.45459 1.54947 1.71084 1.85630 2.20513 2.33860 2.90245 2.95463 3.13385 3.72249 3.75875 4.04051 4.07784 4.16332 4.23867 4.29619 4.34956 4.36989 4.39899 4.47684 4.55670 4.57177 4.69824 4.72731 4.75304 4.83592 4.87868 4.97817 4.98280 5.02886 5.17633 5.23827 5.24638 5.30788 5.35725 5.43013 5.65529 5.77667 6.08441 6.33796 7.06123 7.23481 7.47147 7.86950 8.68782 Molecular weight = 299.16amu Principal moments of inertia in cm(-1) A = 0.016567 B = 0.004184 C = 0.003531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1689.654919 B = 6690.649787 C = 7928.687469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.376 6.376 3 C 0.493 3.507 4 O -0.550 6.550 5 C 0.153 3.847 6 N -0.447 5.447 7 C -0.342 4.342 8 H 0.115 0.885 9 C -0.002 4.002 10 N -0.908 5.908 11 Si 0.997 3.003 12 H -0.257 1.257 13 H -0.285 1.285 14 H -0.275 1.275 15 C 0.458 3.542 16 O -0.631 6.631 17 C -0.104 4.104 18 C -0.085 4.085 19 C 0.076 3.924 20 H 0.074 0.926 21 C -0.149 4.149 22 C -0.143 4.143 23 C 0.056 3.944 24 H 0.074 0.926 25 C -0.143 4.143 26 O -0.393 6.393 27 H 0.050 0.950 28 H 0.044 0.956 29 H 0.134 0.866 30 H 0.078 0.922 31 H 0.135 0.865 32 H 0.272 0.728 33 H 0.089 0.911 34 H 0.085 0.915 35 H 0.072 0.928 36 H 0.058 0.942 37 H 0.092 0.908 38 H 0.071 0.929 39 H 0.079 0.921 40 H 0.096 0.904 41 H 0.055 0.945 42 H 0.092 0.908 43 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.659 8.672 6.158 12.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.292 6.292 3 C 0.337 3.663 4 O -0.439 6.439 5 C 0.027 3.973 6 N -0.166 5.166 7 C -0.469 4.469 8 H 0.132 0.868 9 C -0.202 4.202 10 N -0.549 5.549 11 Si 0.821 3.179 12 H -0.181 1.181 13 H -0.210 1.210 14 H -0.200 1.200 15 C 0.249 3.751 16 O -0.519 6.519 17 C -0.144 4.144 18 C -0.122 4.122 19 C 0.019 3.981 20 H 0.092 0.908 21 C -0.187 4.187 22 C -0.181 4.181 23 C -0.001 4.001 24 H 0.092 0.908 25 C -0.201 4.201 26 O -0.313 6.313 27 H 0.068 0.932 28 H 0.063 0.937 29 H 0.152 0.848 30 H 0.096 0.904 31 H 0.152 0.848 32 H 0.082 0.918 33 H 0.107 0.893 34 H 0.104 0.896 35 H 0.091 0.909 36 H 0.077 0.923 37 H 0.111 0.889 38 H 0.090 0.910 39 H 0.098 0.902 40 H 0.115 0.885 41 H 0.074 0.926 42 H 0.111 0.889 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 5.262 8.435 6.377 11.811 hybrid contribution -0.719 0.136 -0.955 1.203 sum 4.544 8.571 5.422 11.113 Atomic orbital electron populations 1.23282 0.76390 1.04828 1.01063 1.86430 1.23950 1.33863 1.84995 1.24049 0.92611 0.80631 0.68987 1.90458 1.67486 1.37769 1.48232 1.20690 0.87045 0.85913 1.03645 1.43635 1.58116 1.08747 1.06074 1.20028 1.28290 1.13206 0.85341 0.86753 1.26133 0.93935 0.97174 1.02989 1.69688 1.37077 1.19065 1.29046 0.84918 0.79009 0.77760 0.76234 1.18100 1.21036 1.20046 1.21145 0.81525 0.89670 0.82773 1.90485 1.58563 1.70191 1.32652 1.21287 1.01970 0.92083 0.99071 1.21291 1.00929 0.94893 0.95134 1.23029 0.84943 0.95905 0.94221 0.90785 1.23015 0.99341 1.00466 0.95893 1.23021 0.97006 1.01612 0.96436 1.23227 0.95373 0.87320 0.94207 0.90804 1.21809 0.92468 1.03241 1.02541 1.89175 1.27752 1.42188 1.72215 0.93168 0.93748 0.84780 0.90432 0.84804 0.91797 0.89270 0.89650 0.90929 0.92342 0.88919 0.91030 0.90215 0.88541 0.92568 0.88908 0.92526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.34 10.56 113.37 1.20 2.53 16 2 O -0.38 -16.86 10.57 -51.33 -0.54 -17.40 16 3 C 0.49 25.80 5.92 71.24 0.42 26.22 16 4 O -0.55 -32.05 15.94 21.95 0.35 -31.70 16 5 C 0.15 7.80 5.21 85.63 0.45 8.25 16 6 N -0.45 -23.50 2.11 -639.59 -1.35 -24.86 16 7 C -0.34 -17.53 9.14 84.04 0.77 -16.77 16 8 H 0.11 5.44 6.51 -2.91 -0.02 5.42 16 9 C 0.00 -0.12 5.41 84.93 0.46 0.33 16 10 N -0.91 -47.69 8.21 21.66 0.18 -47.52 16 11 Si 1.00 40.61 29.57 68.60 2.03 42.64 16 12 H -0.26 -9.73 7.11 99.48 0.71 -9.02 16 13 H -0.28 -11.56 7.11 99.48 0.71 -10.86 16 14 H -0.28 -11.25 7.11 99.48 0.71 -10.54 16 15 C 0.46 23.19 7.61 87.66 0.67 23.86 16 16 O -0.63 -34.55 15.61 -3.07 -0.05 -34.60 16 17 C -0.10 -4.29 4.16 29.85 0.12 -4.16 16 18 C -0.08 -2.96 4.15 30.59 0.13 -2.84 16 19 C 0.08 2.13 3.26 31.10 0.10 2.23 16 20 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 21 C -0.15 -3.18 6.65 31.67 0.21 -2.97 16 22 C -0.14 -2.49 6.64 31.67 0.21 -2.28 16 23 C 0.06 1.18 3.92 31.10 0.12 1.30 16 24 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 25 C -0.14 -2.56 9.52 71.98 0.69 -1.87 16 26 O -0.39 -11.73 10.75 -148.98 -1.60 -13.34 16 27 H 0.05 1.75 8.13 -2.38 -0.02 1.73 16 28 H 0.04 1.63 8.13 -2.39 -0.02 1.61 16 29 H 0.13 3.35 8.14 -2.39 -0.02 3.33 16 30 H 0.08 3.80 7.49 -2.39 -0.02 3.78 16 31 H 0.13 6.86 6.28 -2.39 -0.02 6.85 16 32 H 0.27 13.74 8.32 -92.71 -0.77 12.97 16 33 H 0.09 3.59 7.39 -2.39 -0.02 3.57 16 34 H 0.09 3.44 8.14 -2.38 -0.02 3.43 16 35 H 0.07 2.60 8.05 -2.39 -0.02 2.58 16 36 H 0.06 2.18 8.14 -2.38 -0.02 2.16 16 37 H 0.09 1.63 8.14 -2.38 -0.02 1.61 16 38 H 0.07 1.61 7.87 -2.39 -0.02 1.59 16 39 H 0.08 1.31 7.86 -2.39 -0.02 1.29 16 40 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 41 H 0.06 1.07 8.14 -2.38 -0.02 1.05 16 42 H 0.09 1.14 8.14 -2.38 -0.02 1.12 16 43 H 0.06 1.07 8.12 -2.39 -0.02 1.06 16 Total: -1.00 -69.22 353.66 5.54 -63.68 By element: Atomic # 1 Polarization: 28.26 SS G_CDS: 0.99 Total: 29.25 kcal Atomic # 6 Polarization: 28.30 SS G_CDS: 5.54 Total: 33.84 kcal Atomic # 7 Polarization: -71.20 SS G_CDS: -1.17 Total: -72.37 kcal Atomic # 8 Polarization: -95.19 SS G_CDS: -1.84 Total: -97.03 kcal Atomic # 14 Polarization: 40.61 SS G_CDS: 2.03 Total: 42.64 kcal Total: -69.22 5.54 -63.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075201223.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.760 kcal (2) G-P(sol) polarization free energy of solvation -69.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -191.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds