Wall clock time and date at job start Tue Mar 31 2020 03:22:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.46926 * 2 1 4 4 H 1.08997 * 109.49459 * 304.97376 * 3 2 1 5 5 C 1.53095 * 109.48340 * 184.94241 * 3 2 1 6 6 C 1.53174 * 109.16667 * 182.40868 * 5 3 2 7 7 H 1.08998 * 109.62024 * 297.07493 * 6 5 3 8 8 C 1.50698 * 109.54553 * 176.84566 * 6 5 3 9 9 O 1.21293 * 119.99899 * 343.67717 * 8 6 5 10 10 N 1.34780 * 119.99834 * 163.39663 * 8 6 5 11 11 C 1.37096 * 119.99794 * 356.26206 * 10 8 6 12 12 H 1.07992 * 120.00514 * 317.60074 * 11 10 8 13 13 C 1.38956 * 119.99553 * 137.60650 * 11 10 8 14 14 N 1.31413 * 119.99790 * 161.42927 * 13 11 10 15 15 Si 1.86799 * 119.99784 * 341.42195 * 13 11 10 16 16 H 1.48509 * 109.46675 * 95.32557 * 15 13 11 17 17 H 1.48499 * 109.47109 * 215.32019 * 15 13 11 18 18 H 1.48491 * 109.47649 * 335.32489 * 15 13 11 19 19 C 1.46500 * 119.99692 * 176.26538 * 10 8 6 20 20 C 1.50698 * 109.47178 * 90.00164 * 19 10 8 21 21 O 1.20826 * 119.99937 * 359.97438 * 20 19 10 22 22 O 1.34229 * 120.00259 * 180.02562 * 20 19 10 23 23 C 1.45193 * 117.00186 * 179.97438 * 22 20 19 24 24 C 1.53190 * 109.03492 * 56.97930 * 6 5 3 25 25 C 1.53090 * 109.16431 * 303.02267 * 24 6 5 26 26 O 1.42898 * 109.41497 * 57.60388 * 25 24 6 27 27 H 1.09001 * 109.46230 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47073 * 299.99372 * 1 2 3 29 29 H 1.09000 * 109.46884 * 59.99943 * 1 2 3 30 30 H 1.09000 * 109.47073 * 240.00628 * 2 1 3 31 31 H 1.09003 * 109.47368 * 119.99890 * 2 1 3 32 32 H 1.08999 * 109.51977 * 62.50304 * 5 3 2 33 33 H 1.09002 * 109.52089 * 302.31529 * 5 3 2 34 34 H 0.97005 * 119.99455 * 179.97438 * 14 13 11 35 35 H 1.08997 * 109.46844 * 209.99662 * 19 10 8 36 36 H 1.08996 * 109.47016 * 329.99704 * 19 10 8 37 37 H 1.09004 * 109.47384 * 299.99667 * 23 22 20 38 38 H 1.08996 * 109.47621 * 59.99446 * 23 22 20 39 39 H 1.09001 * 109.47105 * 179.97438 * 23 22 20 40 40 H 1.08999 * 109.51513 * 62.92795 * 24 6 5 41 41 H 1.09000 * 109.52025 * 183.05235 * 24 6 5 42 42 H 1.08993 * 109.48184 * 177.59138 * 25 24 6 43 43 H 1.09005 * 109.47899 * 297.61664 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6060 1.9818 -0.8419 5 6 3.5659 1.4447 -0.1243 6 6 4.0734 2.8886 -0.0631 7 1 3.6812 3.4507 -0.9106 8 6 5.5797 2.8959 -0.1069 9 8 6.1978 1.8766 0.1170 10 7 6.2399 4.0337 -0.4003 11 6 5.5411 5.1650 -0.7340 12 1 4.6907 5.0988 -1.3964 13 6 5.9270 6.3969 -0.2198 14 7 5.5197 7.5059 -0.7954 15 14 7.0247 6.4765 1.2895 16 1 8.4409 6.6162 0.8647 17 1 6.6396 7.6454 2.1205 18 1 6.8664 5.2314 2.0830 19 6 7.7041 4.0614 -0.3629 20 6 8.2484 3.6933 -1.7191 21 8 7.4909 3.4340 -2.6240 22 8 9.5747 3.6526 -1.9215 23 6 10.0275 3.2899 -3.2525 24 6 3.5956 3.5311 1.2429 25 6 2.0686 3.4484 1.3145 26 8 1.6621 2.0817 1.2210 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5137 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 3.8544 0.9973 -1.0755 33 1 3.9989 0.8713 0.6953 34 1 5.7888 8.3658 -0.4362 35 1 8.0418 5.0627 -0.0954 36 1 8.0621 3.3471 0.3785 37 1 9.6626 2.2934 -3.5015 38 1 9.6428 4.0088 -3.9758 39 1 11.1172 3.2954 -3.2796 40 1 4.0293 2.9998 2.0901 41 1 3.9064 4.5755 1.2700 42 1 1.7259 3.8657 2.2613 43 1 1.6349 4.0140 0.4897 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000180664682.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:22:53 Heat of formation + Delta-G solvation = -169.001232 kcal Electronic energy + Delta-G solvation = -25989.117910 eV Core-core repulsion = 22227.721403 eV Total energy + Delta-G solvation = -3761.396507 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.161 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.15851 -39.51046 -38.18917 -35.95022 -34.92285 -33.81868 -33.10561 -32.10740 -29.50723 -29.00230 -26.81337 -25.55074 -24.59159 -23.26276 -21.63783 -20.87158 -20.02694 -19.01832 -17.43377 -17.13152 -16.66393 -16.14461 -15.88425 -15.51400 -15.46189 -15.20084 -14.41749 -14.30537 -13.79975 -13.56700 -13.47357 -13.21083 -13.14023 -12.87174 -12.80667 -12.29332 -12.22379 -11.87134 -11.61522 -11.57702 -11.42437 -11.16937 -10.95081 -10.78809 -10.69228 -10.56521 -10.36522 -10.21777 -10.13028 -9.92277 -9.85691 -9.40266 -9.22647 -8.63586 -7.99783 -6.59967 -4.27896 2.83359 2.91972 2.99168 3.12984 3.15698 3.66319 3.96364 4.06121 4.19980 4.77637 4.97008 5.15234 5.28756 5.31857 5.34861 5.39421 5.42910 5.47271 5.50245 5.60845 5.65458 5.70215 5.76696 5.78960 5.87169 5.92728 6.00253 6.02411 6.16625 6.23842 6.29609 6.33583 6.37727 6.52925 6.71369 6.80356 6.83394 7.12031 7.56430 7.91319 8.11759 8.37699 8.79919 9.13557 9.47206 10.49908 Molecular weight = 299.16amu Principal moments of inertia in cm(-1) A = 0.015156 B = 0.005461 C = 0.004409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1847.033034 B = 5126.475309 C = 6349.431036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.115 4.115 3 C 0.092 3.908 4 H 0.056 0.944 5 C -0.130 4.130 6 C -0.083 4.083 7 H 0.095 0.905 8 C 0.504 3.496 9 O -0.589 6.589 10 N -0.451 5.451 11 C -0.338 4.338 12 H 0.105 0.895 13 C 0.068 3.932 14 N -0.853 5.853 15 Si 0.859 3.141 16 H -0.270 1.270 17 H -0.280 1.280 18 H -0.255 1.255 19 C 0.108 3.892 20 C 0.450 3.550 21 O -0.489 6.489 22 O -0.370 6.370 23 C 0.037 3.963 24 C -0.140 4.140 25 C 0.066 3.934 26 O -0.383 6.383 27 H 0.049 0.951 28 H 0.061 0.939 29 H 0.050 0.950 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.077 0.923 34 H 0.277 0.723 35 H 0.104 0.896 36 H 0.110 0.890 37 H 0.058 0.942 38 H 0.059 0.941 39 H 0.094 0.906 40 H 0.065 0.935 41 H 0.094 0.906 42 H 0.091 0.909 43 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.801 -6.717 1.571 7.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.153 4.153 3 C 0.034 3.966 4 H 0.074 0.926 5 C -0.169 4.169 6 C -0.104 4.104 7 H 0.113 0.887 8 C 0.295 3.705 9 O -0.472 6.472 10 N -0.172 5.172 11 C -0.465 4.465 12 H 0.123 0.877 13 C -0.140 4.140 14 N -0.487 5.487 15 Si 0.685 3.315 16 H -0.196 1.196 17 H -0.206 1.206 18 H -0.179 1.179 19 C -0.017 4.017 20 C 0.290 3.710 21 O -0.374 6.374 22 O -0.287 6.287 23 C -0.058 4.058 24 C -0.178 4.178 25 C -0.010 4.010 26 O -0.303 6.303 27 H 0.069 0.931 28 H 0.080 0.920 29 H 0.070 0.930 30 H 0.092 0.908 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.096 0.904 34 H 0.088 0.912 35 H 0.121 0.879 36 H 0.128 0.872 37 H 0.076 0.924 38 H 0.078 0.922 39 H 0.113 0.887 40 H 0.084 0.916 41 H 0.113 0.887 42 H 0.109 0.891 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.828 -7.173 1.498 7.553 hybrid contribution 0.965 0.646 0.074 1.164 sum -0.863 -6.527 1.573 6.769 Atomic orbital electron populations 1.21716 0.95582 1.01064 1.02188 1.21530 0.96255 0.94824 1.02641 1.22133 0.93818 0.93551 0.87095 0.92611 1.22064 0.94814 0.96564 1.03411 1.20975 0.92699 0.96604 1.00157 0.88686 1.20458 0.89864 0.82883 0.77337 1.90545 1.69760 1.33202 1.53716 1.43408 1.01395 1.11207 1.61170 1.19024 1.15047 0.83127 1.29351 0.87708 1.25412 0.96706 0.95112 0.96753 1.69734 1.43462 0.98020 1.37524 0.87152 0.80612 0.79356 0.84334 1.19629 1.20572 1.17870 1.21387 0.85485 1.03470 0.91394 1.24754 0.80001 0.73730 0.92527 1.90608 1.58548 1.43739 1.44457 1.86523 1.26339 1.81208 1.34668 1.23129 0.99739 1.00706 0.82185 1.22045 0.95882 1.03316 0.96530 1.22550 0.94091 0.82583 1.01812 1.87843 1.78642 1.25103 1.38664 0.93147 0.91996 0.93044 0.90816 0.91201 0.91206 0.90402 0.91249 0.87854 0.87227 0.92364 0.92208 0.88739 0.91629 0.88745 0.89087 0.92998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 9.81 37.16 0.36 -1.26 16 2 C -0.12 -1.43 5.64 -26.73 -0.15 -1.58 16 3 C 0.09 1.36 2.64 -26.68 -0.07 1.29 16 4 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 5 C -0.13 -2.26 4.19 -26.59 -0.11 -2.37 16 6 C -0.08 -1.63 1.90 -91.58 -0.17 -1.80 16 7 H 0.10 1.90 6.83 -51.93 -0.35 1.55 16 8 C 0.50 11.62 6.84 -10.98 -0.08 11.54 16 9 O -0.59 -14.54 15.57 5.55 0.09 -14.45 16 10 N -0.45 -10.69 1.58 -116.10 -0.18 -10.87 16 11 C -0.34 -8.46 7.97 -14.93 -0.12 -8.58 16 12 H 0.11 2.81 6.99 -52.49 -0.37 2.44 16 13 C 0.07 1.71 5.34 -17.46 -0.09 1.62 16 14 N -0.85 -22.49 13.96 55.50 0.77 -21.71 16 15 Si 0.86 18.73 25.02 -169.99 -4.25 14.48 16 16 H -0.27 -5.67 6.74 56.52 0.38 -5.29 16 17 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 18 H -0.25 -5.50 7.11 56.52 0.40 -5.10 16 19 C 0.11 2.39 4.74 -5.19 -0.02 2.36 16 20 C 0.45 9.95 8.02 36.00 0.29 10.24 16 21 O -0.49 -12.09 16.18 -18.75 -0.30 -12.39 16 22 O -0.37 -6.93 10.56 -39.26 -0.41 -7.35 16 23 C 0.04 0.53 10.56 101.05 1.07 1.60 16 24 C -0.14 -2.48 5.31 -26.59 -0.14 -2.62 16 25 C 0.07 1.00 6.84 37.20 0.25 1.26 16 26 O -0.38 -6.02 9.94 -35.23 -0.35 -6.37 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.72 7.82 -51.93 -0.41 0.32 16 29 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 31 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.08 1.43 7.83 -51.93 -0.41 1.03 16 34 H 0.28 6.81 8.31 -40.82 -0.34 6.47 16 35 H 0.10 2.24 3.64 -51.93 -0.19 2.06 16 36 H 0.11 2.26 7.48 -51.93 -0.39 1.87 16 37 H 0.06 0.83 8.13 -51.93 -0.42 0.41 16 38 H 0.06 0.87 8.13 -51.93 -0.42 0.45 16 39 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 40 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 41 H 0.09 1.80 7.22 -51.93 -0.38 1.42 16 42 H 0.09 1.20 8.14 -51.93 -0.42 0.77 16 43 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 347.38 15.07 5.23 5.23 Total: -1.00 -30.02 347.38 -5.11 -35.12 By element: Atomic # 1 Polarization: 13.35 SS G_CDS: -6.71 Total: 6.64 kcal Atomic # 6 Polarization: 10.66 SS G_CDS: 1.01 Total: 11.67 kcal Atomic # 7 Polarization: -33.17 SS G_CDS: 0.59 Total: -32.58 kcal Atomic # 8 Polarization: -39.59 SS G_CDS: -0.98 Total: -40.57 kcal Atomic # 14 Polarization: 18.73 SS G_CDS: -4.25 Total: 14.48 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -30.02 -5.11 -35.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180664682.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -133.877 kcal (2) G-P(sol) polarization free energy of solvation -30.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds