Wall clock time and date at job start Tue Mar 31 2020 03:22:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.46926 * 2 1 4 4 H 1.08997 * 109.49459 * 304.97376 * 3 2 1 5 5 C 1.53095 * 109.48340 * 184.94241 * 3 2 1 6 6 C 1.53174 * 109.16667 * 182.40868 * 5 3 2 7 7 H 1.08998 * 109.62024 * 297.07493 * 6 5 3 8 8 C 1.50698 * 109.54553 * 176.84566 * 6 5 3 9 9 O 1.21293 * 119.99899 * 343.67717 * 8 6 5 10 10 N 1.34780 * 119.99834 * 163.39663 * 8 6 5 11 11 C 1.37096 * 119.99794 * 356.26206 * 10 8 6 12 12 H 1.07992 * 120.00514 * 317.60074 * 11 10 8 13 13 C 1.38956 * 119.99553 * 137.60650 * 11 10 8 14 14 N 1.31413 * 119.99790 * 161.42927 * 13 11 10 15 15 Si 1.86799 * 119.99784 * 341.42195 * 13 11 10 16 16 H 1.48509 * 109.46675 * 95.32557 * 15 13 11 17 17 H 1.48499 * 109.47109 * 215.32019 * 15 13 11 18 18 H 1.48491 * 109.47649 * 335.32489 * 15 13 11 19 19 C 1.46500 * 119.99692 * 176.26538 * 10 8 6 20 20 C 1.50698 * 109.47178 * 90.00164 * 19 10 8 21 21 O 1.20826 * 119.99937 * 359.97438 * 20 19 10 22 22 O 1.34229 * 120.00259 * 180.02562 * 20 19 10 23 23 C 1.45193 * 117.00186 * 179.97438 * 22 20 19 24 24 C 1.53190 * 109.03492 * 56.97930 * 6 5 3 25 25 C 1.53090 * 109.16431 * 303.02267 * 24 6 5 26 26 O 1.42898 * 109.41497 * 57.60388 * 25 24 6 27 27 H 1.09001 * 109.46230 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47073 * 299.99372 * 1 2 3 29 29 H 1.09000 * 109.46884 * 59.99943 * 1 2 3 30 30 H 1.09000 * 109.47073 * 240.00628 * 2 1 3 31 31 H 1.09003 * 109.47368 * 119.99890 * 2 1 3 32 32 H 1.08999 * 109.51977 * 62.50304 * 5 3 2 33 33 H 1.09002 * 109.52089 * 302.31529 * 5 3 2 34 34 H 0.97005 * 119.99455 * 179.97438 * 14 13 11 35 35 H 1.08997 * 109.46844 * 209.99662 * 19 10 8 36 36 H 1.08996 * 109.47016 * 329.99704 * 19 10 8 37 37 H 1.09004 * 109.47384 * 299.99667 * 23 22 20 38 38 H 1.08996 * 109.47621 * 59.99446 * 23 22 20 39 39 H 1.09001 * 109.47105 * 179.97438 * 23 22 20 40 40 H 1.08999 * 109.51513 * 62.92795 * 24 6 5 41 41 H 1.09000 * 109.52025 * 183.05235 * 24 6 5 42 42 H 1.08993 * 109.48184 * 177.59138 * 25 24 6 43 43 H 1.09005 * 109.47899 * 297.61664 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6060 1.9818 -0.8419 5 6 3.5659 1.4447 -0.1243 6 6 4.0734 2.8886 -0.0631 7 1 3.6812 3.4507 -0.9106 8 6 5.5797 2.8959 -0.1069 9 8 6.1978 1.8766 0.1170 10 7 6.2399 4.0337 -0.4003 11 6 5.5411 5.1650 -0.7340 12 1 4.6907 5.0988 -1.3964 13 6 5.9270 6.3969 -0.2198 14 7 5.5197 7.5059 -0.7954 15 14 7.0247 6.4765 1.2895 16 1 8.4409 6.6162 0.8647 17 1 6.6396 7.6454 2.1205 18 1 6.8664 5.2314 2.0830 19 6 7.7041 4.0614 -0.3629 20 6 8.2484 3.6933 -1.7191 21 8 7.4909 3.4340 -2.6240 22 8 9.5747 3.6526 -1.9215 23 6 10.0275 3.2899 -3.2525 24 6 3.5956 3.5311 1.2429 25 6 2.0686 3.4484 1.3145 26 8 1.6621 2.0817 1.2210 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5137 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 3.8544 0.9973 -1.0755 33 1 3.9989 0.8713 0.6953 34 1 5.7888 8.3658 -0.4362 35 1 8.0418 5.0627 -0.0954 36 1 8.0621 3.3471 0.3785 37 1 9.6626 2.2934 -3.5015 38 1 9.6428 4.0088 -3.9758 39 1 11.1172 3.2954 -3.2796 40 1 4.0293 2.9998 2.0901 41 1 3.9064 4.5755 1.2700 42 1 1.7259 3.8657 2.2613 43 1 1.6349 4.0140 0.4897 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000180664682.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:22:52 Heat of formation + Delta-G solvation = -187.138668 kcal Electronic energy + Delta-G solvation = -25989.904408 eV Core-core repulsion = 22227.721403 eV Total energy + Delta-G solvation = -3762.183005 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.161 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.85967 -41.04621 -39.71365 -37.62485 -36.78444 -34.93412 -34.56775 -34.04558 -30.73588 -30.60986 -28.17256 -27.25819 -26.13703 -24.56059 -23.03236 -22.26934 -21.47083 -20.82903 -19.14744 -18.86359 -18.37657 -17.48155 -17.36654 -17.16958 -17.06783 -16.74317 -16.07841 -15.69839 -15.38056 -14.93961 -14.76482 -14.61346 -14.53285 -14.46259 -14.14669 -14.02547 -13.72628 -13.50937 -13.01375 -12.97132 -12.72955 -12.65627 -12.39403 -12.20021 -12.08441 -11.94593 -11.85331 -11.74395 -11.71679 -11.52225 -11.26052 -11.14847 -10.74651 -10.28631 -9.89764 -8.53852 -6.26101 1.09304 1.17867 1.30106 1.39980 1.45987 1.91093 2.13855 2.47260 2.86991 2.90060 3.71544 3.78494 3.86119 3.90176 3.94321 4.01504 4.13704 4.21801 4.26717 4.27135 4.27791 4.44408 4.50899 4.54970 4.61154 4.61603 4.78467 4.83907 4.92347 4.97027 5.14613 5.14820 5.17948 5.21136 5.25500 5.29116 5.38299 5.49933 6.01147 6.10981 6.32780 6.68552 6.87310 7.22636 7.59508 8.59445 Molecular weight = 299.16amu Principal moments of inertia in cm(-1) A = 0.015156 B = 0.005461 C = 0.004409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1847.033034 B = 5126.475309 C = 6349.431036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.113 4.113 3 C 0.094 3.906 4 H 0.061 0.939 5 C -0.123 4.123 6 C -0.084 4.084 7 H 0.084 0.916 8 C 0.495 3.505 9 O -0.608 6.608 10 N -0.458 5.458 11 C -0.336 4.336 12 H 0.075 0.925 13 C 0.035 3.965 14 N -0.890 5.890 15 Si 0.909 3.091 16 H -0.253 1.253 17 H -0.273 1.273 18 H -0.252 1.252 19 C 0.099 3.901 20 C 0.451 3.549 21 O -0.524 6.524 22 O -0.366 6.366 23 C 0.028 3.972 24 C -0.133 4.133 25 C 0.070 3.930 26 O -0.386 6.386 27 H 0.067 0.933 28 H 0.053 0.947 29 H 0.055 0.945 30 H 0.085 0.915 31 H 0.067 0.933 32 H 0.064 0.936 33 H 0.066 0.934 34 H 0.283 0.717 35 H 0.110 0.890 36 H 0.125 0.875 37 H 0.058 0.942 38 H 0.056 0.944 39 H 0.141 0.859 40 H 0.062 0.938 41 H 0.078 0.922 42 H 0.116 0.884 43 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.399 -7.291 2.379 7.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.151 4.151 3 C 0.036 3.964 4 H 0.079 0.921 5 C -0.161 4.161 6 C -0.105 4.105 7 H 0.102 0.898 8 C 0.287 3.713 9 O -0.494 6.494 10 N -0.179 5.179 11 C -0.464 4.464 12 H 0.093 0.907 13 C -0.170 4.170 14 N -0.526 5.526 15 Si 0.732 3.268 16 H -0.178 1.178 17 H -0.199 1.199 18 H -0.176 1.176 19 C -0.026 4.026 20 C 0.293 3.707 21 O -0.412 6.412 22 O -0.282 6.282 23 C -0.065 4.065 24 C -0.172 4.172 25 C -0.006 4.006 26 O -0.305 6.305 27 H 0.086 0.914 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.103 0.897 31 H 0.086 0.914 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.093 0.907 35 H 0.127 0.873 36 H 0.142 0.858 37 H 0.077 0.923 38 H 0.075 0.925 39 H 0.159 0.841 40 H 0.080 0.920 41 H 0.097 0.903 42 H 0.134 0.866 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.402 -7.747 2.305 8.203 hybrid contribution 0.930 0.793 -0.280 1.254 sum -0.472 -6.954 2.025 7.258 Atomic orbital electron populations 1.21681 0.94177 1.02229 1.02025 1.21554 0.97432 0.92959 1.03126 1.22215 0.91830 0.95269 0.87095 0.92100 1.22020 0.96779 0.94652 1.02635 1.21031 0.90503 0.98215 1.00734 0.89780 1.21091 0.91295 0.82374 0.76538 1.90515 1.70546 1.33644 1.54654 1.43468 1.02194 1.10978 1.61282 1.18737 1.14778 0.83906 1.28948 0.90724 1.25919 0.97990 0.94409 0.98705 1.69805 1.45174 0.98699 1.38934 0.86356 0.79873 0.79526 0.81044 1.17809 1.19916 1.17573 1.21510 0.84706 1.04251 0.92140 1.24665 0.80982 0.72998 0.92029 1.90592 1.59653 1.45533 1.45437 1.86490 1.24047 1.80592 1.37050 1.23558 1.02443 1.00541 0.79969 1.21997 0.98016 1.01926 0.95217 1.22595 0.91899 0.82698 1.03413 1.87855 1.78352 1.25249 1.39045 0.91361 0.92758 0.92588 0.89686 0.91424 0.91684 0.91549 0.90739 0.87304 0.85760 0.92316 0.92484 0.84058 0.91968 0.90292 0.86580 0.92556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.84 9.81 71.98 0.71 -2.14 16 2 C -0.11 -2.63 5.64 30.60 0.17 -2.46 16 3 C 0.09 2.68 2.64 30.63 0.08 2.77 16 4 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 5 C -0.12 -4.26 4.19 30.68 0.13 -4.13 16 6 C -0.08 -3.33 1.90 -11.42 -0.02 -3.36 16 7 H 0.08 3.51 6.83 -2.39 -0.02 3.50 16 8 C 0.50 23.20 6.84 87.66 0.60 23.80 16 9 O -0.61 -30.33 15.57 -3.07 -0.05 -30.38 16 10 N -0.46 -21.99 1.58 -639.61 -1.01 -23.00 16 11 C -0.34 -17.23 7.97 84.04 0.67 -16.56 16 12 H 0.08 4.21 6.99 -2.91 -0.02 4.19 16 13 C 0.04 1.77 5.34 84.93 0.45 2.22 16 14 N -0.89 -47.46 13.96 21.67 0.30 -47.16 16 15 Si 0.91 37.84 25.02 68.60 1.72 39.55 16 16 H -0.25 -9.80 6.74 99.48 0.67 -9.13 16 17 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 18 H -0.25 -10.33 7.11 99.48 0.71 -9.63 16 19 C 0.10 4.32 4.74 85.63 0.41 4.72 16 20 C 0.45 19.83 8.02 71.24 0.57 20.40 16 21 O -0.52 -26.25 16.18 21.96 0.36 -25.90 16 22 O -0.37 -13.12 10.56 -51.41 -0.54 -13.67 16 23 C 0.03 0.75 10.56 113.37 1.20 1.95 16 24 C -0.13 -4.74 5.31 30.69 0.16 -4.58 16 25 C 0.07 2.05 6.84 72.01 0.49 2.54 16 26 O -0.39 -11.57 9.94 -148.98 -1.48 -13.05 16 27 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.05 1.16 7.82 -2.39 -0.02 1.14 16 29 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 33 H 0.07 2.45 7.83 -2.39 -0.02 2.43 16 34 H 0.28 13.93 8.31 -92.70 -0.77 13.16 16 35 H 0.11 4.59 3.64 -2.39 -0.01 4.58 16 36 H 0.12 5.01 7.48 -2.39 -0.02 5.00 16 37 H 0.06 1.59 8.13 -2.39 -0.02 1.57 16 38 H 0.06 1.58 8.13 -2.39 -0.02 1.56 16 39 H 0.14 2.47 8.14 -2.39 -0.02 2.45 16 40 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 41 H 0.08 3.04 7.22 -2.39 -0.02 3.03 16 42 H 0.12 2.81 8.14 -2.39 -0.02 2.79 16 43 H 0.06 1.60 8.14 -2.38 -0.02 1.58 16 Total: -1.00 -64.85 347.38 5.87 -58.98 By element: Atomic # 1 Polarization: 28.48 SS G_CDS: 0.96 Total: 29.44 kcal Atomic # 6 Polarization: 19.56 SS G_CDS: 5.62 Total: 25.18 kcal Atomic # 7 Polarization: -69.45 SS G_CDS: -0.71 Total: -70.16 kcal Atomic # 8 Polarization: -81.27 SS G_CDS: -1.72 Total: -82.99 kcal Atomic # 14 Polarization: 37.84 SS G_CDS: 1.72 Total: 39.55 kcal Total: -64.85 5.87 -58.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180664682.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.162 kcal (2) G-P(sol) polarization free energy of solvation -64.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -193.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds