Wall clock time and date at job start Tue Mar 31 2020 04:36:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.36774 * 126.01269 * 2 1 4 4 O 1.35096 * 122.89430 * 355.28719 * 3 2 1 5 5 N 1.29490 * 114.20652 * 175.55022 * 3 2 1 6 6 C 1.46317 * 109.09992 * 358.68874 * 5 3 2 7 7 H 1.09003 * 106.17562 * 253.89965 * 6 5 3 8 8 C 1.49712 * 113.08145 * 137.44744 * 6 5 3 9 9 N 1.46323 * 113.36349 * 267.30671 * 8 6 5 10 10 C 1.46898 * 111.00098 * 180.73398 * 9 8 6 11 11 C 1.53005 * 109.46761 * 66.68126 * 10 9 8 12 12 C 1.52999 * 109.46938 * 179.88042 * 11 10 9 13 13 S 1.80997 * 109.47164 * 179.97438 * 12 11 10 14 14 C 1.76201 * 100.00157 * 180.02562 * 13 12 11 15 15 H 1.07998 * 119.99966 * 359.97438 * 14 13 12 16 16 C 1.38801 * 120.00283 * 180.02562 * 14 13 12 17 17 N 1.31637 * 119.99456 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 120.00166 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.47059 * 60.00220 * 18 16 14 20 20 H 1.48509 * 109.46905 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.47262 * 299.99962 * 18 16 14 22 22 C 1.47311 * 109.26370 * 303.47227 * 9 8 6 23 23 C 1.51366 * 108.46627 * 69.66025 * 22 9 8 24 24 C 1.48344 * 126.01984 * 180.02562 * 2 1 3 25 25 H 1.09000 * 110.00723 * 304.80136 * 24 2 1 26 26 H 1.09008 * 109.47595 * 359.97288 * 1 2 3 27 27 H 1.09008 * 109.47399 * 119.97045 * 1 2 3 28 28 H 1.09000 * 109.47038 * 239.97181 * 1 2 3 29 29 H 0.96700 * 113.99578 * 180.02562 * 4 3 2 30 30 H 1.09002 * 108.70569 * 28.30687 * 8 6 5 31 31 H 1.08993 * 108.70798 * 146.30402 * 8 6 5 32 32 H 1.09005 * 109.47471 * 186.67631 * 10 9 8 33 33 H 1.08992 * 109.47546 * 306.68341 * 10 9 8 34 34 H 1.09001 * 109.47131 * 299.87580 * 11 10 9 35 35 H 1.08994 * 109.47273 * 59.88327 * 11 10 9 36 36 H 1.08998 * 109.47531 * 299.99884 * 12 11 10 37 37 H 1.09004 * 109.47348 * 60.00367 * 12 11 10 38 38 H 0.97004 * 119.99546 * 180.02562 * 17 16 14 39 39 H 1.09004 * 109.74757 * 189.77936 * 22 9 8 40 40 H 1.09001 * 109.74754 * 310.46163 * 22 9 8 41 41 H 1.09000 * 109.62882 * 181.62234 * 23 22 9 42 42 H 1.09005 * 107.60898 * 63.45372 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2691 1.1063 0.0000 4 8 1.7860 2.3645 -0.0932 5 7 3.5337 0.8435 0.0916 6 6 3.7151 -0.6043 0.2010 7 1 3.9820 -0.7992 1.2397 8 6 4.8470 -1.1186 -0.6331 9 7 4.4324 -1.5598 -1.9651 10 6 5.5776 -2.0694 -2.7311 11 6 6.0944 -3.3547 -2.0814 12 6 7.2853 -3.8870 -2.8809 13 16 7.8971 -5.4070 -2.1120 14 6 9.2263 -5.7888 -3.2039 15 1 9.4367 -5.1442 -4.0445 16 6 10.0022 -6.9186 -2.9844 17 7 9.7453 -7.7045 -1.9602 18 14 11.4108 -7.3236 -4.1424 19 1 12.3915 -6.2085 -4.1380 20 1 12.0786 -8.5713 -3.6921 21 1 10.8825 -7.5129 -5.5173 22 6 3.3862 -2.5884 -1.8327 23 6 2.1264 -1.9272 -1.3159 24 6 2.3373 -1.1998 -0.0005 25 1 2.0838 -1.8456 0.8402 26 1 -0.3634 1.0277 0.0005 27 1 -0.3634 -0.5134 -0.8903 28 1 -0.3633 -0.5143 0.8897 29 1 2.4684 3.0496 -0.0813 30 1 5.5887 -0.3273 -0.7421 31 1 5.3095 -1.9586 -0.1149 32 1 5.2659 -2.2795 -3.7543 33 1 6.3709 -1.3220 -2.7391 34 1 6.4081 -3.1442 -1.0590 35 1 5.3005 -4.1014 -2.0715 36 1 6.9717 -4.0975 -3.9034 37 1 8.0793 -3.1403 -2.8908 38 1 10.2878 -8.4939 -1.8065 39 1 3.1944 -3.0458 -2.8033 40 1 3.7072 -3.3510 -1.1231 41 1 1.3470 -2.6775 -1.1832 42 1 1.7985 -1.2093 -2.0677 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330557656.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:36:47 Heat of formation + Delta-G solvation = 3.372172 kcal Electronic energy + Delta-G solvation = -22074.073120 eV Core-core repulsion = 18795.196907 eV Total energy + Delta-G solvation = -3278.876213 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 299.141 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.22889 -38.68793 -37.06514 -33.87306 -33.43754 -32.42354 -31.04449 -29.63461 -27.07821 -25.84813 -25.36692 -23.39049 -23.26735 -21.33360 -21.09385 -19.04807 -17.68316 -17.45603 -16.63183 -16.43813 -15.86335 -15.27023 -14.96587 -14.79862 -14.65079 -14.17025 -14.10989 -13.74217 -13.54062 -13.27351 -13.12951 -12.79606 -12.48361 -12.20592 -11.82335 -11.70847 -11.61353 -11.46273 -11.08358 -11.02706 -11.01341 -10.73641 -10.68842 -10.29092 -10.22869 -9.91409 -9.68729 -9.04615 -8.37586 -8.16090 -8.03641 -6.52893 -6.22307 -3.92687 2.23185 2.47805 3.22508 3.23768 3.28221 3.58594 3.81515 3.90566 4.23101 4.23377 4.54253 4.60975 4.89980 5.02686 5.08936 5.10968 5.13595 5.15148 5.30621 5.33103 5.36886 5.40309 5.50037 5.59487 5.62485 5.68985 5.71438 5.74265 5.91724 5.95270 6.09353 6.11832 6.26392 6.35491 6.52475 6.59452 6.72591 7.07602 7.11070 7.35762 7.60890 7.87845 8.37101 9.23965 10.85877 Molecular weight = 299.14amu Principal moments of inertia in cm(-1) A = 0.043075 B = 0.002506 C = 0.002466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.872708 B =11169.720055 C =11351.646296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.111 3.889 2 N -0.633 5.633 3 C 0.543 3.457 4 O -0.473 6.473 5 N -0.611 5.611 6 C 0.084 3.916 7 H 0.070 0.930 8 C 0.067 3.933 9 N -0.524 5.524 10 C 0.058 3.942 11 C -0.135 4.135 12 C -0.109 4.109 13 S -0.138 6.138 14 C -0.515 4.515 15 H 0.072 0.928 16 C 0.070 3.930 17 N -0.871 5.871 18 Si 0.918 3.082 19 H -0.274 1.274 20 H -0.283 1.283 21 H -0.274 1.274 22 C 0.049 3.951 23 C -0.121 4.121 24 C 0.141 3.859 25 H 0.086 0.914 26 H 0.078 0.922 27 H 0.057 0.943 28 H 0.056 0.944 29 H 0.424 0.576 30 H 0.088 0.912 31 H 0.046 0.954 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.267 0.733 39 H 0.082 0.918 40 H 0.046 0.954 41 H 0.069 0.931 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.025 16.051 4.037 25.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.032 4.032 2 N -0.364 5.364 3 C 0.231 3.769 4 O -0.269 6.269 5 N -0.361 5.361 6 C -0.027 4.027 7 H 0.088 0.912 8 C -0.062 4.062 9 N -0.247 5.247 10 C -0.071 4.071 11 C -0.175 4.175 12 C -0.258 4.258 13 S 0.090 5.910 14 C -0.664 4.664 15 H 0.090 0.910 16 C -0.138 4.138 17 N -0.506 5.506 18 Si 0.745 3.255 19 H -0.199 1.199 20 H -0.208 1.208 21 H -0.199 1.199 22 C -0.080 4.080 23 C -0.160 4.160 24 C 0.037 3.963 25 H 0.104 0.896 26 H 0.097 0.903 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.280 0.720 30 H 0.106 0.894 31 H 0.064 0.936 32 H 0.095 0.905 33 H 0.094 0.906 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.077 0.923 39 H 0.100 0.900 40 H 0.064 0.936 41 H 0.088 0.912 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -19.432 15.952 4.815 25.598 hybrid contribution 1.417 -0.523 -1.305 1.996 sum -18.015 15.429 3.510 23.977 Atomic orbital electron populations 1.21419 0.77487 1.03040 1.01265 1.48089 1.05558 1.02976 1.79764 1.20770 0.86302 0.81730 0.88116 1.84543 1.39460 1.12921 1.89978 1.74952 1.10506 1.13415 1.37200 1.20814 0.93120 0.88794 0.99954 0.91213 1.21260 0.96113 0.99946 0.88879 1.62784 1.10661 1.35811 1.15445 1.22299 0.92024 0.95403 0.97413 1.21957 0.97978 0.97490 1.00036 1.23179 0.99026 1.02001 1.01590 1.84596 1.40178 1.25238 1.40945 1.22646 1.16564 1.13060 1.14090 0.91005 1.25020 0.97682 0.95221 0.95893 1.70020 1.39031 1.14073 1.27503 0.86223 0.81065 0.77837 0.80410 1.19920 1.20827 1.19930 1.21884 0.91595 0.93228 1.01270 1.21359 0.98346 1.00098 0.96246 1.21584 0.90135 0.85916 0.98662 0.89639 0.90301 0.92432 0.92503 0.71955 0.89369 0.93553 0.90546 0.90627 0.91537 0.91421 0.92138 0.92132 0.92282 0.89993 0.93616 0.91189 0.90787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.75 11.09 59.84 0.66 1.41 16 2 N -0.63 -6.15 2.95 -177.07 -0.52 -6.67 16 3 C 0.54 5.93 8.76 -89.60 -0.79 5.15 16 4 O -0.47 -3.99 13.04 -16.99 -0.22 -4.21 16 5 N -0.61 -7.64 11.36 -58.80 -0.67 -8.31 16 6 C 0.08 0.99 3.43 -70.44 -0.24 0.75 16 7 H 0.07 0.81 8.10 -51.93 -0.42 0.39 16 8 C 0.07 0.84 4.83 -5.77 -0.03 0.81 16 9 N -0.52 -6.66 5.00 -237.85 -1.19 -7.85 16 10 C 0.06 0.78 5.37 -3.82 -0.02 0.76 16 11 C -0.13 -2.16 4.46 -26.73 -0.12 -2.28 16 12 C -0.11 -2.19 5.67 37.16 0.21 -1.98 16 13 S -0.14 -3.62 21.44 -107.50 -2.30 -5.92 16 14 C -0.52 -14.88 9.50 30.94 0.29 -14.58 16 15 H 0.07 2.01 7.80 -52.49 -0.41 1.60 16 16 C 0.07 2.02 5.49 -17.43 -0.10 1.93 16 17 N -0.87 -26.15 13.22 55.49 0.73 -25.42 16 18 Si 0.92 21.65 29.55 -169.99 -5.02 16.63 16 19 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 20 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 21 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 22 C 0.05 0.55 4.48 -4.42 -0.02 0.53 16 23 C -0.12 -1.17 5.47 -28.18 -0.15 -1.32 16 24 C 0.14 1.40 3.77 -68.32 -0.26 1.15 16 25 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.08 0.50 7.61 -51.92 -0.40 0.11 16 27 H 0.06 0.34 8.14 -51.92 -0.42 -0.08 16 28 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.42 1.98 9.03 45.56 0.41 2.39 16 30 H 0.09 1.20 8.04 -51.93 -0.42 0.78 16 31 H 0.05 0.59 6.33 -51.93 -0.33 0.27 16 32 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.08 1.03 8.10 -51.93 -0.42 0.61 16 34 H 0.07 1.10 6.53 -51.93 -0.34 0.76 16 35 H 0.07 1.09 6.63 -51.93 -0.34 0.74 16 36 H 0.06 1.21 8.14 -51.92 -0.42 0.78 16 37 H 0.06 1.22 8.14 -51.91 -0.42 0.80 16 38 H 0.27 7.49 8.31 -40.82 -0.34 7.16 16 39 H 0.08 0.90 8.06 -51.93 -0.42 0.48 16 40 H 0.05 0.53 6.96 -51.93 -0.36 0.17 16 41 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.07 0.81 7.90 -51.93 -0.41 0.40 16 LS Contribution 346.60 15.07 5.22 5.22 Total: -1.00 -33.41 346.60 -10.47 -43.88 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: -5.95 Total: 0.31 kcal Atomic # 6 Polarization: -7.12 SS G_CDS: -0.55 Total: -7.68 kcal Atomic # 7 Polarization: -46.60 SS G_CDS: -1.64 Total: -48.25 kcal Atomic # 8 Polarization: -3.99 SS G_CDS: -0.22 Total: -4.21 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Atomic # 16 Polarization: -3.62 SS G_CDS: -2.30 Total: -5.92 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -33.41 -10.47 -43.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330557656.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.257 kcal (2) G-P(sol) polarization free energy of solvation -33.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.885 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds