Wall clock time and date at job start Tue Mar 31 2020 04:36:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.36774 * 126.01269 * 2 1 4 4 O 1.35096 * 122.89430 * 355.28719 * 3 2 1 5 5 N 1.29490 * 114.20652 * 175.55022 * 3 2 1 6 6 C 1.46317 * 109.09992 * 358.68874 * 5 3 2 7 7 H 1.09003 * 106.17562 * 253.89965 * 6 5 3 8 8 C 1.49712 * 113.08145 * 137.44744 * 6 5 3 9 9 N 1.46323 * 113.36349 * 267.30671 * 8 6 5 10 10 C 1.46898 * 111.00098 * 180.73398 * 9 8 6 11 11 C 1.53005 * 109.46761 * 66.68126 * 10 9 8 12 12 C 1.52999 * 109.46938 * 179.88042 * 11 10 9 13 13 S 1.80997 * 109.47164 * 179.97438 * 12 11 10 14 14 C 1.76201 * 100.00157 * 180.02562 * 13 12 11 15 15 H 1.07998 * 119.99966 * 359.97438 * 14 13 12 16 16 C 1.38801 * 120.00283 * 180.02562 * 14 13 12 17 17 N 1.31637 * 119.99456 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 120.00166 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.47059 * 60.00220 * 18 16 14 20 20 H 1.48509 * 109.46905 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.47262 * 299.99962 * 18 16 14 22 22 C 1.47311 * 109.26370 * 303.47227 * 9 8 6 23 23 C 1.51366 * 108.46627 * 69.66025 * 22 9 8 24 24 C 1.48344 * 126.01984 * 180.02562 * 2 1 3 25 25 H 1.09000 * 110.00723 * 304.80136 * 24 2 1 26 26 H 1.09008 * 109.47595 * 359.97288 * 1 2 3 27 27 H 1.09008 * 109.47399 * 119.97045 * 1 2 3 28 28 H 1.09000 * 109.47038 * 239.97181 * 1 2 3 29 29 H 0.96700 * 113.99578 * 180.02562 * 4 3 2 30 30 H 1.09002 * 108.70569 * 28.30687 * 8 6 5 31 31 H 1.08993 * 108.70798 * 146.30402 * 8 6 5 32 32 H 1.09005 * 109.47471 * 186.67631 * 10 9 8 33 33 H 1.08992 * 109.47546 * 306.68341 * 10 9 8 34 34 H 1.09001 * 109.47131 * 299.87580 * 11 10 9 35 35 H 1.08994 * 109.47273 * 59.88327 * 11 10 9 36 36 H 1.08998 * 109.47531 * 299.99884 * 12 11 10 37 37 H 1.09004 * 109.47348 * 60.00367 * 12 11 10 38 38 H 0.97004 * 119.99546 * 180.02562 * 17 16 14 39 39 H 1.09004 * 109.74757 * 189.77936 * 22 9 8 40 40 H 1.09001 * 109.74754 * 310.46163 * 22 9 8 41 41 H 1.09000 * 109.62882 * 181.62234 * 23 22 9 42 42 H 1.09005 * 107.60898 * 63.45372 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2691 1.1063 0.0000 4 8 1.7860 2.3645 -0.0932 5 7 3.5337 0.8435 0.0916 6 6 3.7151 -0.6043 0.2010 7 1 3.9820 -0.7992 1.2397 8 6 4.8470 -1.1186 -0.6331 9 7 4.4324 -1.5598 -1.9651 10 6 5.5776 -2.0694 -2.7311 11 6 6.0944 -3.3547 -2.0814 12 6 7.2853 -3.8870 -2.8809 13 16 7.8971 -5.4070 -2.1120 14 6 9.2263 -5.7888 -3.2039 15 1 9.4367 -5.1442 -4.0445 16 6 10.0022 -6.9186 -2.9844 17 7 9.7453 -7.7045 -1.9602 18 14 11.4108 -7.3236 -4.1424 19 1 12.3915 -6.2085 -4.1380 20 1 12.0786 -8.5713 -3.6921 21 1 10.8825 -7.5129 -5.5173 22 6 3.3862 -2.5884 -1.8327 23 6 2.1264 -1.9272 -1.3159 24 6 2.3373 -1.1998 -0.0005 25 1 2.0838 -1.8456 0.8402 26 1 -0.3634 1.0277 0.0005 27 1 -0.3634 -0.5134 -0.8903 28 1 -0.3633 -0.5143 0.8897 29 1 2.4684 3.0496 -0.0813 30 1 5.5887 -0.3273 -0.7421 31 1 5.3095 -1.9586 -0.1149 32 1 5.2659 -2.2795 -3.7543 33 1 6.3709 -1.3220 -2.7391 34 1 6.4081 -3.1442 -1.0590 35 1 5.3005 -4.1014 -2.0715 36 1 6.9717 -4.0975 -3.9034 37 1 8.0793 -3.1403 -2.8908 38 1 10.2878 -8.4939 -1.8065 39 1 3.1944 -3.0458 -2.8033 40 1 3.7072 -3.3510 -1.1231 41 1 1.3470 -2.6775 -1.1832 42 1 1.7985 -1.2093 -2.0677 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330557656.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:36:46 Heat of formation + Delta-G solvation = -23.907267 kcal Electronic energy + Delta-G solvation = -22075.256046 eV Core-core repulsion = 18795.196907 eV Total energy + Delta-G solvation = -3280.059139 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 299.141 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.04303 -39.58083 -37.89099 -34.75185 -34.60400 -34.46663 -32.08070 -30.55386 -28.02650 -27.67845 -26.54927 -24.48506 -24.24171 -22.47281 -21.85743 -20.04959 -19.49411 -18.41770 -17.51814 -17.23213 -16.89847 -16.81812 -16.24041 -16.16314 -15.80269 -15.58747 -15.13330 -14.75425 -14.54044 -14.24618 -14.12296 -13.81034 -13.62278 -13.35856 -13.11440 -13.02670 -12.86226 -12.78150 -12.58632 -12.50255 -12.42237 -11.97566 -11.85078 -11.50997 -11.47652 -11.13507 -11.01585 -10.74201 -10.36236 -9.25245 -8.86160 -8.67336 -8.37763 -6.14109 1.31081 1.40412 1.47169 1.54212 1.67635 1.75594 2.28344 2.90848 2.96355 3.13498 3.31174 3.41464 3.73075 3.90123 3.94028 4.08465 4.18245 4.23473 4.25950 4.31967 4.45511 4.51099 4.54876 4.66286 4.67946 4.72917 4.75692 4.82347 4.89173 4.91832 4.98972 5.04173 5.13484 5.25326 5.30624 5.39083 5.47807 5.96957 6.06376 6.08642 6.17515 6.61490 7.04375 7.14408 8.71346 Molecular weight = 299.14amu Principal moments of inertia in cm(-1) A = 0.043075 B = 0.002506 C = 0.002466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.872708 B =11169.720055 C =11351.646296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.634 5.634 3 C 0.541 3.459 4 O -0.469 6.469 5 N -0.643 5.643 6 C 0.081 3.919 7 H 0.065 0.935 8 C 0.072 3.928 9 N -0.526 5.526 10 C 0.069 3.931 11 C -0.120 4.120 12 C -0.084 4.084 13 S -0.201 6.201 14 C -0.538 4.538 15 H 0.072 0.928 16 C 0.015 3.985 17 N -0.908 5.908 18 Si 0.993 3.007 19 H -0.265 1.265 20 H -0.275 1.275 21 H -0.264 1.264 22 C 0.046 3.954 23 C -0.111 4.111 24 C 0.139 3.861 25 H 0.101 0.899 26 H 0.081 0.919 27 H 0.067 0.933 28 H 0.071 0.929 29 H 0.437 0.563 30 H 0.073 0.927 31 H 0.040 0.960 32 H 0.085 0.915 33 H 0.075 0.925 34 H 0.059 0.941 35 H 0.068 0.932 36 H 0.064 0.936 37 H 0.060 0.940 38 H 0.271 0.729 39 H 0.087 0.913 40 H 0.041 0.959 41 H 0.093 0.907 42 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.070 16.605 3.183 26.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.035 4.035 2 N -0.365 5.365 3 C 0.229 3.771 4 O -0.268 6.268 5 N -0.395 5.395 6 C -0.030 4.030 7 H 0.083 0.917 8 C -0.057 4.057 9 N -0.248 5.248 10 C -0.061 4.061 11 C -0.160 4.160 12 C -0.234 4.234 13 S 0.027 5.973 14 C -0.686 4.686 15 H 0.090 0.910 16 C -0.190 4.190 17 N -0.544 5.544 18 Si 0.815 3.185 19 H -0.190 1.190 20 H -0.199 1.199 21 H -0.188 1.188 22 C -0.082 4.082 23 C -0.150 4.150 24 C 0.035 3.965 25 H 0.119 0.881 26 H 0.100 0.900 27 H 0.086 0.914 28 H 0.090 0.910 29 H 0.297 0.703 30 H 0.092 0.908 31 H 0.058 0.942 32 H 0.103 0.897 33 H 0.093 0.907 34 H 0.078 0.922 35 H 0.087 0.913 36 H 0.083 0.917 37 H 0.078 0.922 38 H 0.080 0.920 39 H 0.105 0.895 40 H 0.060 0.940 41 H 0.112 0.888 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -20.511 16.532 3.965 26.641 hybrid contribution 1.649 -0.598 -1.008 2.023 sum -18.862 15.933 2.957 24.868 Atomic orbital electron populations 1.21610 0.75674 1.03690 1.02478 1.48255 1.06595 1.02408 1.79217 1.20932 0.86254 0.82676 0.87223 1.84542 1.40106 1.12511 1.89592 1.74916 1.11726 1.13700 1.39111 1.20782 0.93893 0.89042 0.99332 0.91746 1.21183 0.96401 0.99193 0.88917 1.62829 1.10360 1.36186 1.15472 1.22179 0.92447 0.93775 0.97690 1.21863 0.96211 0.98639 0.99263 1.23124 1.00175 0.98378 1.01724 1.84598 1.40486 1.29584 1.42605 1.23009 1.17491 1.13643 1.14474 0.90951 1.26075 1.00496 0.94841 0.97600 1.70154 1.40360 1.14604 1.29301 0.85075 0.77320 0.77925 0.78163 1.18993 1.19946 1.18850 1.21967 0.91763 0.92898 1.01578 1.21282 0.97962 1.00215 0.95550 1.21616 0.89177 0.86246 0.99434 0.88141 0.89987 0.91406 0.91036 0.70314 0.90833 0.94193 0.89653 0.90680 0.92187 0.91287 0.91716 0.92155 0.91973 0.89490 0.94033 0.88831 0.91834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.18 11.09 127.77 1.42 2.60 16 2 N -0.63 -11.11 2.95 -824.91 -2.43 -13.54 16 3 C 0.54 11.15 8.76 179.99 1.58 12.73 16 4 O -0.47 -7.24 13.04 -83.71 -1.09 -8.33 16 5 N -0.64 -15.75 11.36 -454.49 -5.16 -20.92 16 6 C 0.08 1.86 3.43 43.47 0.15 2.01 16 7 H 0.06 1.50 8.10 -2.39 -0.02 1.48 16 8 C 0.07 1.80 4.83 85.36 0.41 2.21 16 9 N -0.53 -12.83 5.00 -906.41 -4.53 -17.36 16 10 C 0.07 1.79 5.37 86.31 0.46 2.25 16 11 C -0.12 -3.77 4.46 30.60 0.14 -3.63 16 12 C -0.08 -3.38 5.67 71.98 0.41 -2.98 16 13 S -0.20 -10.77 21.44 -56.49 -1.21 -11.98 16 14 C -0.54 -31.35 9.50 67.95 0.65 -30.71 16 15 H 0.07 4.05 7.80 -2.91 -0.02 4.03 16 16 C 0.01 0.85 5.49 84.86 0.47 1.31 16 17 N -0.91 -55.15 13.22 21.65 0.29 -54.86 16 18 Si 0.99 44.16 29.55 68.60 2.03 46.19 16 19 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 20 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 21 H -0.26 -11.21 7.11 99.48 0.71 -10.51 16 22 C 0.05 0.96 4.48 85.69 0.38 1.34 16 23 C -0.11 -1.90 5.47 29.66 0.16 -1.74 16 24 C 0.14 2.54 3.77 43.73 0.17 2.70 16 25 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 26 H 0.08 0.86 7.61 -2.38 -0.02 0.84 16 27 H 0.07 0.62 8.14 -2.38 -0.02 0.60 16 28 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.44 3.59 9.03 -74.06 -0.67 2.92 16 30 H 0.07 2.03 8.04 -2.39 -0.02 2.01 16 31 H 0.04 1.03 6.33 -2.39 -0.02 1.02 16 32 H 0.09 2.10 8.14 -2.38 -0.02 2.08 16 33 H 0.07 1.97 8.10 -2.39 -0.02 1.95 16 34 H 0.06 1.98 6.53 -2.39 -0.02 1.96 16 35 H 0.07 2.17 6.63 -2.39 -0.02 2.15 16 36 H 0.06 2.53 8.14 -2.40 -0.02 2.51 16 37 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 38 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 39 H 0.09 1.74 8.06 -2.39 -0.02 1.72 16 40 H 0.04 0.91 6.96 -2.39 -0.02 0.89 16 41 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 42 H 0.06 1.25 7.90 -2.38 -0.02 1.23 16 Total: -1.00 -71.87 346.60 -5.38 -77.25 By element: Atomic # 1 Polarization: 15.10 SS G_CDS: 0.35 Total: 15.45 kcal Atomic # 6 Polarization: -18.29 SS G_CDS: 6.39 Total: -11.91 kcal Atomic # 7 Polarization: -94.84 SS G_CDS: -11.83 Total: -106.67 kcal Atomic # 8 Polarization: -7.24 SS G_CDS: -1.09 Total: -8.33 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.19 kcal Atomic # 16 Polarization: -10.77 SS G_CDS: -1.21 Total: -11.98 kcal Total: -71.87 -5.38 -77.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330557656.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.344 kcal (2) G-P(sol) polarization free energy of solvation -71.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds