Wall clock time and date at job start Tue Mar 31 2020 04:16:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42895 * 109.47320 * 2 1 4 4 C 1.42899 * 113.99992 * 180.02562 * 3 2 1 5 5 H 1.08996 * 112.85312 * 21.68998 * 4 3 2 6 6 C 1.53782 * 113.61526 * 250.49450 * 4 3 2 7 7 C 1.53783 * 87.08109 * 220.02236 * 6 4 3 8 8 N 1.46507 * 113.60937 * 270.88121 * 7 6 4 9 9 C 1.34770 * 119.99885 * 280.21982 * 8 7 6 10 10 O 1.21687 * 120.00511 * 0.28143 * 9 8 7 11 11 C 1.46376 * 119.99702 * 180.27651 * 9 8 7 12 12 H 1.08000 * 120.00120 * 353.94383 * 11 9 8 13 13 C 1.40057 * 119.99755 * 173.93935 * 11 9 8 14 14 N 1.30671 * 120.00075 * 6.15252 * 13 11 9 15 15 Si 1.86803 * 119.99793 * 186.15024 * 13 11 9 16 16 H 1.48503 * 109.47007 * 94.98007 * 15 13 11 17 17 H 1.48489 * 109.47077 * 214.98182 * 15 13 11 18 18 H 1.48500 * 109.47038 * 334.98634 * 15 13 11 19 19 C 1.50703 * 113.61250 * 140.06906 * 7 6 4 20 20 O 1.20829 * 119.99607 * 287.37699 * 19 7 6 21 21 O 1.34226 * 119.99991 * 107.38419 * 19 7 6 22 22 C 1.45201 * 116.99606 * 179.97438 * 21 19 7 23 23 C 1.53778 * 87.08084 * 25.43171 * 7 6 4 24 24 C 1.53002 * 113.61385 * 89.11926 * 23 7 6 25 25 C 1.53001 * 113.61056 * 220.01640 * 23 7 6 26 26 H 1.08998 * 109.47083 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.46972 * 299.99854 * 1 2 3 28 28 H 1.09003 * 109.46984 * 59.99708 * 1 2 3 29 29 H 1.08999 * 109.46972 * 240.00146 * 2 1 3 30 30 H 1.09003 * 109.46984 * 120.00292 * 2 1 3 31 31 H 1.09003 * 113.61358 * 105.46929 * 6 4 3 32 32 H 1.09009 * 113.68925 * 334.58062 * 6 4 3 33 33 H 0.96992 * 119.99837 * 100.50374 * 8 7 6 34 34 H 0.96999 * 119.99470 * 180.02562 * 14 13 11 35 35 H 1.09003 * 109.47444 * 60.00337 * 22 21 19 36 36 H 1.09004 * 109.47226 * 179.97438 * 22 21 19 37 37 H 1.09000 * 109.47280 * 299.99400 * 22 21 19 38 38 H 1.09007 * 109.46839 * 68.42378 * 24 23 7 39 39 H 1.08999 * 109.46925 * 188.42327 * 24 23 7 40 40 H 1.08994 * 109.46819 * 308.42517 * 24 23 7 41 41 H 1.09001 * 109.47226 * 60.00573 * 25 23 7 42 42 H 1.09007 * 109.46992 * 180.02562 * 25 23 7 43 43 H 1.08994 * 109.47318 * 300.00307 * 25 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4600 -0.0006 5 1 3.9264 0.5631 -0.3721 6 6 4.0085 1.9774 1.3274 7 6 4.9920 2.8075 0.4856 8 7 6.2328 2.0981 0.1639 9 6 7.2165 2.0112 1.0810 10 8 7.0721 2.5174 2.1781 11 6 8.4586 1.3076 0.7574 12 1 8.5498 0.7751 -0.1777 13 6 9.5290 1.3252 1.6606 14 7 9.3792 1.8656 2.8408 15 14 11.1707 0.5759 1.1778 16 1 12.0626 1.6380 0.6471 17 1 11.7992 -0.0487 2.3694 18 1 10.9552 -0.4572 0.1330 19 6 5.2336 4.1918 1.0301 20 8 4.3736 5.0356 0.9385 21 8 6.4041 4.4874 1.6167 22 6 6.5673 5.8404 2.1176 23 6 3.9456 2.7603 -0.6403 24 6 2.9372 3.9098 -0.5885 25 6 4.5509 2.5612 -2.0314 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 4.4903 1.2035 1.9250 32 1 3.3081 2.5824 1.9034 33 1 6.3480 1.6946 -0.7106 34 1 10.1207 1.8780 3.4661 35 1 5.8037 6.0446 2.8683 36 1 7.5549 5.9450 2.5668 37 1 6.4656 6.5474 1.2943 38 1 3.4423 4.8469 -0.8230 39 1 2.1456 3.7317 -1.3163 40 1 2.5057 3.9697 0.4105 41 1 5.0995 1.6197 -2.0576 42 1 3.7537 2.5384 -2.7746 43 1 5.2304 3.3840 -2.2531 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000332077648.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:16:02 Heat of formation + Delta-G solvation = -155.419447 kcal Electronic energy + Delta-G solvation = -26600.860485 eV Core-core repulsion = 22840.052928 eV Total energy + Delta-G solvation = -3760.807557 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.161 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.56037 -40.35588 -38.88177 -37.85045 -36.89098 -34.59738 -33.55006 -32.03951 -31.39238 -29.12642 -28.47922 -28.00885 -26.17519 -23.94863 -23.51636 -22.64377 -21.54703 -19.75381 -19.12461 -18.59866 -17.78135 -17.45963 -17.17446 -17.05565 -16.52512 -16.28310 -15.82532 -15.35762 -14.87338 -14.66451 -14.41488 -14.39135 -13.99950 -13.87434 -13.74000 -13.34780 -13.30974 -13.11457 -12.97641 -12.89909 -12.81607 -12.70138 -12.47851 -12.29249 -12.21194 -12.03180 -11.91111 -11.79404 -11.54014 -11.42493 -10.88073 -10.72291 -10.34014 -9.60483 -9.47660 -8.19180 -6.72373 1.17524 1.44371 1.45027 1.59205 1.98483 2.27934 2.60046 2.75121 2.86741 3.16696 3.37677 3.57658 3.77587 3.91289 4.10930 4.17781 4.22362 4.24671 4.29053 4.34018 4.38529 4.55824 4.59193 4.61833 4.71288 4.80207 4.84426 4.91546 5.00146 5.08606 5.10235 5.11431 5.30503 5.34621 5.41291 5.43188 5.68123 5.95328 6.11314 6.31494 6.32548 6.93923 6.98355 7.59308 8.62022 8.80233 Molecular weight = 299.16amu Principal moments of inertia in cm(-1) A = 0.015913 B = 0.005336 C = 0.004501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.147097 B = 5246.261300 C = 6218.763483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.043 3.957 3 O -0.377 6.377 4 C 0.100 3.900 5 H 0.108 0.892 6 C -0.149 4.149 7 C 0.163 3.837 8 N -0.729 5.729 9 C 0.543 3.457 10 O -0.576 6.576 11 C -0.570 4.570 12 H 0.083 0.917 13 C 0.037 3.963 14 N -0.815 5.815 15 Si 0.987 3.013 16 H -0.268 1.268 17 H -0.277 1.277 18 H -0.250 1.250 19 C 0.463 3.537 20 O -0.532 6.532 21 O -0.319 6.319 22 C 0.027 3.973 23 C -0.055 4.055 24 C -0.094 4.094 25 C -0.138 4.138 26 H 0.090 0.910 27 H 0.053 0.947 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.045 0.955 31 H 0.062 0.938 32 H 0.083 0.917 33 H 0.400 0.600 34 H 0.270 0.730 35 H 0.056 0.944 36 H 0.097 0.903 37 H 0.065 0.935 38 H 0.055 0.945 39 H 0.072 0.928 40 H 0.044 0.956 41 H 0.072 0.928 42 H 0.089 0.911 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.960 -2.399 -9.462 14.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.033 4.033 3 O -0.296 6.296 4 C 0.042 3.958 5 H 0.125 0.875 6 C -0.189 4.189 7 C 0.072 3.928 8 N -0.387 5.387 9 C 0.346 3.654 10 O -0.459 6.459 11 C -0.607 4.607 12 H 0.102 0.898 13 C -0.178 4.178 14 N -0.444 5.444 15 Si 0.808 3.192 16 H -0.193 1.193 17 H -0.202 1.202 18 H -0.173 1.173 19 C 0.307 3.693 20 O -0.423 6.423 21 O -0.232 6.232 22 C -0.067 4.067 23 C -0.056 4.056 24 C -0.151 4.151 25 C -0.195 4.195 26 H 0.108 0.892 27 H 0.073 0.927 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.063 0.937 31 H 0.081 0.919 32 H 0.102 0.898 33 H 0.237 0.763 34 H 0.080 0.920 35 H 0.075 0.925 36 H 0.116 0.884 37 H 0.084 0.916 38 H 0.074 0.926 39 H 0.091 0.909 40 H 0.063 0.937 41 H 0.091 0.909 42 H 0.108 0.892 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -11.328 -1.563 -8.482 14.238 hybrid contribution 1.156 -0.150 0.306 1.205 sum -10.172 -1.714 -8.176 13.163 Atomic orbital electron populations 1.21740 0.92481 1.03338 1.02738 1.22773 0.96626 0.83080 1.00794 1.87932 1.19492 1.27766 1.94379 1.23470 0.81666 0.97288 0.93395 0.87455 1.23791 0.96944 0.99464 0.98694 1.20747 0.87211 0.86176 0.98653 1.45820 1.14506 1.60037 1.18376 1.18494 0.83229 0.80210 0.83488 1.90615 1.80999 1.50380 1.23868 1.21299 0.98066 1.35355 1.05997 0.89840 1.26729 1.03762 0.93758 0.93571 1.70180 1.32553 1.35392 1.06322 0.85160 0.76512 0.78908 0.78658 1.19336 1.20235 1.17281 1.24342 0.79891 0.90862 0.74240 1.90565 1.45164 1.50232 1.56351 1.87276 1.36634 1.32294 1.66996 1.23298 1.02966 0.81342 0.99117 1.22379 0.92622 0.96580 0.94047 1.21376 0.96798 0.95184 1.01770 1.21769 1.01559 1.02518 0.93632 0.89171 0.92746 0.91676 0.91734 0.93676 0.91916 0.89827 0.76279 0.91980 0.92502 0.88405 0.91610 0.92609 0.90897 0.93675 0.90923 0.89185 0.92356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.38 10.28 71.98 0.74 -1.64 16 2 C 0.04 0.89 6.51 71.98 0.47 1.36 16 3 O -0.38 -10.14 9.55 -148.98 -1.42 -11.56 16 4 C 0.10 2.92 3.63 31.12 0.11 3.03 16 5 H 0.11 2.81 7.72 -2.39 -0.02 2.79 16 6 C -0.15 -5.63 6.88 31.12 0.21 -5.41 16 7 C 0.16 6.42 0.91 3.38 0.00 6.43 16 8 N -0.73 -31.01 5.04 -428.15 -2.16 -33.17 16 9 C 0.54 29.43 7.03 86.36 0.61 30.04 16 10 O -0.58 -35.53 11.77 19.60 0.23 -35.30 16 11 C -0.57 -30.71 9.54 24.83 0.24 -30.47 16 12 H 0.08 4.03 7.85 -2.91 -0.02 4.01 16 13 C 0.04 2.00 5.49 85.31 0.47 2.46 16 14 N -0.81 -47.95 11.85 21.84 0.26 -47.69 16 15 Si 0.99 39.87 29.56 68.60 2.03 41.90 16 16 H -0.27 -10.53 7.11 99.48 0.71 -9.82 16 17 H -0.28 -10.95 7.11 99.48 0.71 -10.24 16 18 H -0.25 -9.33 7.11 99.48 0.71 -8.63 16 19 C 0.46 20.73 7.02 71.24 0.50 21.23 16 20 O -0.53 -22.93 12.28 21.96 0.27 -22.66 16 21 O -0.32 -15.77 6.47 -43.47 -0.28 -16.05 16 22 C 0.03 1.06 10.56 113.37 1.20 2.25 16 23 C -0.06 -1.68 1.26 -51.66 -0.07 -1.74 16 24 C -0.09 -2.88 6.67 71.98 0.48 -2.40 16 25 C -0.14 -3.30 8.39 71.98 0.60 -2.69 16 26 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 27 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.06 2.62 8.14 -2.39 -0.02 2.60 16 32 H 0.08 3.24 7.55 -2.38 -0.02 3.22 16 33 H 0.40 14.43 6.43 -92.71 -0.60 13.84 16 34 H 0.27 14.58 8.29 -92.71 -0.77 13.81 16 35 H 0.06 2.11 8.13 -2.39 -0.02 2.09 16 36 H 0.10 3.66 8.14 -2.39 -0.02 3.64 16 37 H 0.07 2.28 8.13 -2.39 -0.02 2.26 16 38 H 0.06 1.84 6.58 -2.38 -0.02 1.83 16 39 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 40 H 0.04 1.55 6.58 -2.39 -0.02 1.54 16 41 H 0.07 1.58 6.55 -2.39 -0.02 1.56 16 42 H 0.09 1.71 8.14 -2.38 -0.02 1.69 16 43 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 Total: -1.00 -72.47 347.27 4.91 -67.56 By element: Atomic # 1 Polarization: 34.11 SS G_CDS: 0.42 Total: 34.53 kcal Atomic # 6 Polarization: 16.87 SS G_CDS: 5.57 Total: 22.43 kcal Atomic # 7 Polarization: -78.95 SS G_CDS: -1.90 Total: -80.85 kcal Atomic # 8 Polarization: -84.37 SS G_CDS: -1.20 Total: -85.57 kcal Atomic # 14 Polarization: 39.87 SS G_CDS: 2.03 Total: 41.90 kcal Total: -72.47 4.91 -67.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332077648.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.855 kcal (2) G-P(sol) polarization free energy of solvation -72.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds