Wall clock time and date at job start Tue Mar 31 2020 04:16:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42903 * 109.47365 * 2 1 4 4 C 1.42901 * 114.00099 * 179.97438 * 3 2 1 5 5 H 1.08999 * 112.84713 * 341.19588 * 4 3 2 6 6 C 1.54049 * 113.69720 * 112.46168 * 4 3 2 7 7 C 1.53783 * 86.98401 * 139.99131 * 6 4 3 8 8 N 1.46502 * 113.61401 * 219.98576 * 7 6 4 9 9 C 1.34778 * 119.99458 * 279.13661 * 8 7 6 10 10 O 1.21686 * 120.00617 * 359.97438 * 9 8 7 11 11 C 1.46384 * 119.99761 * 180.02562 * 9 8 7 12 12 H 1.08000 * 119.99770 * 359.97438 * 11 9 8 13 13 C 1.40048 * 119.99810 * 179.97438 * 11 9 8 14 14 N 1.30670 * 120.00228 * 359.97438 * 13 11 9 15 15 Si 1.86802 * 119.99816 * 179.97438 * 13 11 9 16 16 H 1.48499 * 109.46948 * 359.97438 * 15 13 11 17 17 H 1.48496 * 109.47161 * 119.99858 * 15 13 11 18 18 H 1.48501 * 109.46999 * 239.99911 * 15 13 11 19 19 C 1.50693 * 113.61419 * 89.16144 * 7 6 4 20 20 O 1.20818 * 120.00307 * 347.48611 * 19 7 6 21 21 O 1.34231 * 120.00104 * 167.20335 * 19 7 6 22 22 C 1.45196 * 117.00665 * 180.27919 * 21 19 7 23 23 C 1.53775 * 113.61578 * 209.99754 * 4 3 2 24 24 C 1.53002 * 113.61520 * 105.38116 * 23 4 3 25 25 C 1.53004 * 113.61438 * 334.48525 * 23 4 3 26 26 H 1.09000 * 109.47033 * 59.99710 * 1 2 3 27 27 H 1.08994 * 109.47458 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46921 * 300.00385 * 1 2 3 29 29 H 1.08997 * 109.47257 * 239.99771 * 2 1 3 30 30 H 1.09000 * 109.46719 * 119.99576 * 2 1 3 31 31 H 1.08997 * 113.61188 * 25.49089 * 6 4 3 32 32 H 1.08994 * 113.69840 * 254.50764 * 6 4 3 33 33 H 0.96993 * 120.00535 * 99.13280 * 8 7 6 34 34 H 0.96995 * 120.00261 * 180.02562 * 14 13 11 35 35 H 1.09000 * 109.46992 * 59.99715 * 22 21 19 36 36 H 1.08992 * 109.47804 * 180.02562 * 22 21 19 37 37 H 1.09008 * 109.46929 * 300.00180 * 22 21 19 38 38 H 1.09007 * 109.47292 * 152.91285 * 24 23 4 39 39 H 1.08997 * 109.47244 * 272.91614 * 24 23 4 40 40 H 1.08998 * 109.46934 * 32.91650 * 24 23 4 41 41 H 1.09001 * 109.46626 * 322.49785 * 25 23 4 42 42 H 1.08994 * 109.47361 * 82.50241 * 25 23 4 43 43 H 1.08997 * 109.47230 * 202.50625 * 25 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.9277 0.5456 0.3247 6 6 4.0061 2.0460 -1.3028 7 6 4.9915 2.8299 -0.4200 8 7 5.2257 4.2019 -0.8773 9 6 6.0931 4.4386 -1.8813 10 8 6.6821 3.5130 -2.4077 11 6 6.3276 5.8095 -2.3379 12 1 5.8052 6.6311 -1.8705 13 6 7.2293 6.0556 -3.3809 14 7 7.8617 5.0616 -3.9461 15 14 7.5279 7.8050 -3.9641 16 1 6.6949 8.7413 -3.1674 17 1 8.9624 8.1468 -3.7895 18 1 7.1633 7.9173 -5.3992 19 6 6.2682 2.0834 -0.1308 20 8 6.3495 0.9048 -0.3837 21 8 7.3172 2.7292 0.4027 22 6 8.5164 1.9485 0.6488 23 6 3.9484 2.7252 0.7050 24 6 4.5574 2.4543 2.0823 25 6 2.9407 3.8765 0.7156 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 1.8932 -0.5138 0.8900 31 1 3.3040 2.6809 -1.8433 32 1 4.4865 1.3050 -1.9417 33 1 4.7565 4.9398 -0.4576 34 1 8.4865 5.2320 -4.6681 35 1 8.8769 1.5304 -0.2910 36 1 9.2851 2.5894 1.0804 37 1 8.2871 1.1392 1.3422 38 1 5.2985 3.2208 2.3091 39 1 3.7715 2.4740 2.8373 40 1 5.0360 1.4750 2.0815 41 1 2.3987 3.8936 -0.2299 42 1 2.2366 3.7355 1.5356 43 1 3.4689 4.8206 0.8486 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332077650.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:16:28 Heat of formation + Delta-G solvation = -147.134804 kcal Electronic energy + Delta-G solvation = -26485.440629 eV Core-core repulsion = 22724.992322 eV Total energy + Delta-G solvation = -3760.448308 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.161 amu Computer time = 2.28 seconds Orbital eigenvalues (eV) -41.12109 -38.86445 -37.23567 -36.31110 -35.58023 -32.68048 -31.84954 -31.07478 -30.12259 -27.94396 -27.15838 -26.39167 -24.29273 -22.87181 -22.36313 -21.23268 -19.83628 -18.46513 -17.41845 -16.97652 -16.47261 -15.85152 -15.70615 -15.47557 -15.23341 -15.01964 -14.38350 -13.73104 -13.60083 -13.24494 -13.20511 -12.89917 -12.55290 -12.46706 -12.38099 -12.28798 -12.09476 -11.95385 -11.65902 -11.56707 -11.31688 -11.27693 -11.12485 -10.98459 -10.85459 -10.52425 -10.39948 -10.27885 -10.17534 -10.08144 -9.81789 -9.17630 -8.87671 -7.67169 -7.65815 -6.20933 -4.66275 2.78652 3.12415 3.20757 3.25000 3.31453 3.70089 4.09053 4.43205 4.48785 4.67915 4.77042 4.95606 5.02149 5.15793 5.20180 5.30531 5.37123 5.43338 5.51110 5.52287 5.63343 5.67507 5.75747 5.78535 5.86457 5.91429 5.95978 5.97506 6.03057 6.09329 6.13251 6.31002 6.40970 6.45480 6.57234 7.02181 7.38220 7.41663 7.79206 7.94450 8.27502 8.44592 9.00565 9.44656 10.56071 10.74026 Molecular weight = 299.16amu Principal moments of inertia in cm(-1) A = 0.017024 B = 0.005043 C = 0.004446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1644.305507 B = 5550.699992 C = 6296.366766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.054 3.946 3 O -0.367 6.367 4 C 0.072 3.928 5 H 0.093 0.907 6 C -0.135 4.135 7 C 0.179 3.821 8 N -0.740 5.740 9 C 0.556 3.444 10 O -0.570 6.570 11 C -0.539 4.539 12 H 0.069 0.931 13 C 0.088 3.912 14 N -0.765 5.765 15 Si 0.908 3.092 16 H -0.263 1.263 17 H -0.277 1.277 18 H -0.277 1.277 19 C 0.506 3.494 20 O -0.523 6.523 21 O -0.338 6.338 22 C 0.039 3.961 23 C -0.071 4.071 24 C -0.145 4.145 25 C -0.116 4.116 26 H 0.063 0.937 27 H 0.067 0.933 28 H 0.061 0.939 29 H 0.048 0.952 30 H 0.045 0.955 31 H 0.102 0.898 32 H 0.082 0.918 33 H 0.388 0.612 34 H 0.268 0.732 35 H 0.062 0.938 36 H 0.094 0.906 37 H 0.052 0.948 38 H 0.069 0.931 39 H 0.065 0.935 40 H 0.053 0.947 41 H 0.069 0.931 42 H 0.063 0.937 43 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.036 -5.263 11.101 15.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.022 4.022 3 O -0.286 6.286 4 C 0.014 3.986 5 H 0.110 0.890 6 C -0.174 4.174 7 C 0.088 3.912 8 N -0.398 5.398 9 C 0.361 3.639 10 O -0.452 6.452 11 C -0.576 4.576 12 H 0.088 0.912 13 C -0.132 4.132 14 N -0.394 5.394 15 Si 0.732 3.268 16 H -0.187 1.187 17 H -0.202 1.202 18 H -0.202 1.202 19 C 0.349 3.651 20 O -0.412 6.412 21 O -0.253 6.253 22 C -0.055 4.055 23 C -0.072 4.072 24 C -0.203 4.203 25 C -0.173 4.173 26 H 0.082 0.918 27 H 0.086 0.914 28 H 0.080 0.920 29 H 0.066 0.934 30 H 0.063 0.937 31 H 0.121 0.879 32 H 0.100 0.900 33 H 0.223 0.777 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.113 0.887 37 H 0.071 0.929 38 H 0.088 0.912 39 H 0.084 0.916 40 H 0.072 0.928 41 H 0.088 0.912 42 H 0.082 0.918 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -8.507 -6.192 10.500 14.865 hybrid contribution 0.464 0.759 -0.221 0.917 sum -8.043 -5.433 10.279 14.137 Atomic orbital electron populations 1.21730 0.94005 1.01915 1.03013 1.22486 0.95279 0.84457 1.00026 1.87906 1.20406 1.25708 1.94566 1.23858 0.80923 0.97154 0.96697 0.88965 1.23801 0.96851 0.99747 0.97000 1.20548 0.87576 0.86977 0.96121 1.46225 1.49852 1.03358 1.40381 1.18297 0.77422 0.90661 0.77508 1.90622 1.51064 1.45803 1.57742 1.20841 1.26402 0.91242 1.19135 0.91247 1.25692 0.94214 0.98036 0.95220 1.70028 1.19469 1.31630 1.18267 0.86318 0.78607 0.82956 0.78898 1.18709 1.20206 1.20202 1.23010 0.84691 0.85518 0.71858 1.90547 1.83213 1.17455 1.49980 1.86548 1.22146 1.42895 1.73672 1.23128 0.85042 0.95903 1.01403 1.22410 0.94393 0.96689 0.93721 1.21884 1.01061 1.01856 0.95449 1.21375 0.97156 0.95624 1.03144 0.91832 0.91445 0.92020 0.93352 0.93659 0.87948 0.89980 0.77665 0.92171 0.91951 0.88737 0.92908 0.91229 0.91639 0.92839 0.91182 0.91758 0.91945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 10.28 37.16 0.38 -1.01 16 2 C 0.05 0.63 6.50 37.16 0.24 0.87 16 3 O -0.37 -5.26 9.45 -35.23 -0.33 -5.60 16 4 C 0.07 1.14 3.33 -25.78 -0.09 1.06 16 5 H 0.09 1.48 7.12 -51.93 -0.37 1.11 16 6 C -0.13 -2.60 6.71 -25.78 -0.17 -2.77 16 7 C 0.18 3.58 1.02 -132.16 -0.13 3.45 16 8 N -0.74 -16.39 5.01 -49.32 -0.25 -16.64 16 9 C 0.56 15.49 7.31 -12.98 -0.09 15.39 16 10 O -0.57 -18.06 13.75 5.20 0.07 -17.99 16 11 C -0.54 -14.95 9.54 -35.63 -0.34 -15.29 16 12 H 0.07 1.76 7.85 -52.49 -0.41 1.35 16 13 C 0.09 2.43 5.50 -17.37 -0.10 2.34 16 14 N -0.77 -22.75 11.83 55.55 0.66 -22.09 16 15 Si 0.91 19.94 29.56 -169.99 -5.02 14.92 16 16 H -0.26 -5.56 7.11 56.52 0.40 -5.16 16 17 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 18 H -0.28 -5.99 7.11 56.52 0.40 -5.58 16 19 C 0.51 11.17 3.82 36.00 0.14 11.31 16 20 O -0.52 -12.05 15.12 -18.74 -0.28 -12.33 16 21 O -0.34 -7.29 10.17 -39.44 -0.40 -7.69 16 22 C 0.04 0.68 10.56 101.05 1.07 1.75 16 23 C -0.07 -1.11 1.29 -153.70 -0.20 -1.31 16 24 C -0.15 -1.99 8.30 37.16 0.31 -1.68 16 25 C -0.12 -1.56 7.69 37.16 0.29 -1.28 16 26 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.10 1.95 7.65 -51.93 -0.40 1.55 16 32 H 0.08 1.75 7.63 -51.93 -0.40 1.36 16 33 H 0.39 7.52 6.49 -40.82 -0.26 7.25 16 34 H 0.27 7.23 8.29 -40.82 -0.34 6.89 16 35 H 0.06 1.17 8.13 -51.93 -0.42 0.75 16 36 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 37 H 0.05 0.78 8.13 -51.92 -0.42 0.36 16 38 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.06 0.74 8.09 -51.93 -0.42 0.32 16 40 H 0.05 0.75 7.35 -51.93 -0.38 0.37 16 41 H 0.07 1.00 7.19 -51.93 -0.37 0.63 16 42 H 0.06 0.75 8.11 -51.93 -0.42 0.33 16 43 H 0.06 0.80 6.71 -51.93 -0.35 0.45 16 LS Contribution 353.80 15.07 5.33 5.33 Total: -1.00 -35.14 353.80 -5.65 -40.79 By element: Atomic # 1 Polarization: 15.18 SS G_CDS: -6.72 Total: 8.46 kcal Atomic # 6 Polarization: 11.54 SS G_CDS: 1.30 Total: 12.84 kcal Atomic # 7 Polarization: -39.14 SS G_CDS: 0.41 Total: -38.73 kcal Atomic # 8 Polarization: -42.67 SS G_CDS: -0.95 Total: -43.62 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -5.02 Total: 14.92 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -35.14 -5.65 -40.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332077650.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.341 kcal (2) G-P(sol) polarization free energy of solvation -35.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.28 seconds