Wall clock time and date at job start Tue Mar 31 2020 04:16:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42903 * 109.47365 * 2 1 4 4 C 1.42901 * 114.00099 * 179.97438 * 3 2 1 5 5 H 1.08999 * 112.84713 * 341.19588 * 4 3 2 6 6 C 1.54049 * 113.69720 * 112.46168 * 4 3 2 7 7 C 1.53783 * 86.98401 * 139.99131 * 6 4 3 8 8 N 1.46502 * 113.61401 * 219.98576 * 7 6 4 9 9 C 1.34778 * 119.99458 * 279.13661 * 8 7 6 10 10 O 1.21686 * 120.00617 * 359.97438 * 9 8 7 11 11 C 1.46384 * 119.99761 * 180.02562 * 9 8 7 12 12 H 1.08000 * 119.99770 * 359.97438 * 11 9 8 13 13 C 1.40048 * 119.99810 * 179.97438 * 11 9 8 14 14 N 1.30670 * 120.00228 * 359.97438 * 13 11 9 15 15 Si 1.86802 * 119.99816 * 179.97438 * 13 11 9 16 16 H 1.48499 * 109.46948 * 359.97438 * 15 13 11 17 17 H 1.48496 * 109.47161 * 119.99858 * 15 13 11 18 18 H 1.48501 * 109.46999 * 239.99911 * 15 13 11 19 19 C 1.50693 * 113.61419 * 89.16144 * 7 6 4 20 20 O 1.20818 * 120.00307 * 347.48611 * 19 7 6 21 21 O 1.34231 * 120.00104 * 167.20335 * 19 7 6 22 22 C 1.45196 * 117.00665 * 180.27919 * 21 19 7 23 23 C 1.53775 * 113.61578 * 209.99754 * 4 3 2 24 24 C 1.53002 * 113.61520 * 105.38116 * 23 4 3 25 25 C 1.53004 * 113.61438 * 334.48525 * 23 4 3 26 26 H 1.09000 * 109.47033 * 59.99710 * 1 2 3 27 27 H 1.08994 * 109.47458 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46921 * 300.00385 * 1 2 3 29 29 H 1.08997 * 109.47257 * 239.99771 * 2 1 3 30 30 H 1.09000 * 109.46719 * 119.99576 * 2 1 3 31 31 H 1.08997 * 113.61188 * 25.49089 * 6 4 3 32 32 H 1.08994 * 113.69840 * 254.50764 * 6 4 3 33 33 H 0.96993 * 120.00535 * 99.13280 * 8 7 6 34 34 H 0.96995 * 120.00261 * 180.02562 * 14 13 11 35 35 H 1.09000 * 109.46992 * 59.99715 * 22 21 19 36 36 H 1.08992 * 109.47804 * 180.02562 * 22 21 19 37 37 H 1.09008 * 109.46929 * 300.00180 * 22 21 19 38 38 H 1.09007 * 109.47292 * 152.91285 * 24 23 4 39 39 H 1.08997 * 109.47244 * 272.91614 * 24 23 4 40 40 H 1.08998 * 109.46934 * 32.91650 * 24 23 4 41 41 H 1.09001 * 109.46626 * 322.49785 * 25 23 4 42 42 H 1.08994 * 109.47361 * 82.50241 * 25 23 4 43 43 H 1.08997 * 109.47230 * 202.50625 * 25 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.9277 0.5456 0.3247 6 6 4.0061 2.0460 -1.3028 7 6 4.9915 2.8299 -0.4200 8 7 5.2257 4.2019 -0.8773 9 6 6.0931 4.4386 -1.8813 10 8 6.6821 3.5130 -2.4077 11 6 6.3276 5.8095 -2.3379 12 1 5.8052 6.6311 -1.8705 13 6 7.2293 6.0556 -3.3809 14 7 7.8617 5.0616 -3.9461 15 14 7.5279 7.8050 -3.9641 16 1 6.6949 8.7413 -3.1674 17 1 8.9624 8.1468 -3.7895 18 1 7.1633 7.9173 -5.3992 19 6 6.2682 2.0834 -0.1308 20 8 6.3495 0.9048 -0.3837 21 8 7.3172 2.7292 0.4027 22 6 8.5164 1.9485 0.6488 23 6 3.9484 2.7252 0.7050 24 6 4.5574 2.4543 2.0823 25 6 2.9407 3.8765 0.7156 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 1.8932 -0.5138 0.8900 31 1 3.3040 2.6809 -1.8433 32 1 4.4865 1.3050 -1.9417 33 1 4.7565 4.9398 -0.4576 34 1 8.4865 5.2320 -4.6681 35 1 8.8769 1.5304 -0.2910 36 1 9.2851 2.5894 1.0804 37 1 8.2871 1.1392 1.3422 38 1 5.2985 3.2208 2.3091 39 1 3.7715 2.4740 2.8373 40 1 5.0360 1.4750 2.0815 41 1 2.3987 3.8936 -0.2299 42 1 2.2366 3.7355 1.5356 43 1 3.4689 4.8206 0.8486 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000332077650.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:16:23 Heat of formation + Delta-G solvation = -172.067232 kcal Electronic energy + Delta-G solvation = -26486.521781 eV Core-core repulsion = 22724.992322 eV Total energy + Delta-G solvation = -3761.529459 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.161 amu Computer time = 5.00 seconds Orbital eigenvalues (eV) -42.65132 -40.39510 -39.02358 -37.80712 -37.23464 -34.71108 -33.72501 -32.08103 -31.42955 -29.36829 -28.58091 -28.17326 -25.89139 -23.99342 -23.51719 -22.92551 -21.62219 -20.06042 -19.23522 -18.62546 -17.92901 -17.60439 -17.22606 -17.06978 -16.57476 -16.36485 -15.95448 -15.28143 -15.00484 -14.85100 -14.55602 -14.43618 -14.07175 -13.97552 -13.76588 -13.41835 -13.27305 -13.12137 -13.07042 -12.99646 -12.92131 -12.80643 -12.57889 -12.37504 -12.27395 -12.10220 -11.97561 -11.79418 -11.66349 -11.57031 -11.35585 -10.93436 -10.37954 -9.84908 -9.59122 -8.28011 -6.83875 1.09614 1.41159 1.41787 1.59386 1.77421 2.23706 2.47957 2.53508 2.97227 3.22120 3.26380 3.54472 3.68522 3.82715 4.00505 4.09830 4.19673 4.20796 4.24870 4.26014 4.35828 4.51573 4.55122 4.56716 4.71630 4.73444 4.81149 4.85885 4.95830 5.01474 5.03134 5.07563 5.25350 5.31617 5.33746 5.36529 5.45472 5.86916 6.05228 6.24211 6.25136 6.74958 6.88767 7.50428 8.49051 8.68033 Molecular weight = 299.16amu Principal moments of inertia in cm(-1) A = 0.017024 B = 0.005043 C = 0.004446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1644.305507 B = 5550.699992 C = 6296.366766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.043 3.957 3 O -0.369 6.369 4 C 0.092 3.908 5 H 0.090 0.910 6 C -0.143 4.143 7 C 0.160 3.840 8 N -0.726 5.726 9 C 0.544 3.456 10 O -0.619 6.619 11 C -0.566 4.566 12 H 0.090 0.910 13 C 0.031 3.969 14 N -0.820 5.820 15 Si 0.996 3.004 16 H -0.244 1.244 17 H -0.271 1.271 18 H -0.272 1.272 19 C 0.501 3.499 20 O -0.545 6.545 21 O -0.355 6.355 22 C 0.033 3.967 23 C -0.055 4.055 24 C -0.142 4.142 25 C -0.114 4.114 26 H 0.056 0.944 27 H 0.089 0.911 28 H 0.067 0.933 29 H 0.041 0.959 30 H 0.060 0.940 31 H 0.099 0.901 32 H 0.047 0.953 33 H 0.403 0.597 34 H 0.272 0.728 35 H 0.037 0.963 36 H 0.127 0.873 37 H 0.078 0.922 38 H 0.067 0.933 39 H 0.098 0.902 40 H 0.045 0.955 41 H 0.059 0.941 42 H 0.092 0.908 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.562 -3.746 13.101 17.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.033 4.033 3 O -0.288 6.288 4 C 0.033 3.967 5 H 0.108 0.892 6 C -0.183 4.183 7 C 0.069 3.931 8 N -0.384 5.384 9 C 0.349 3.651 10 O -0.506 6.506 11 C -0.602 4.602 12 H 0.108 0.892 13 C -0.184 4.184 14 N -0.450 5.450 15 Si 0.815 3.185 16 H -0.167 1.167 17 H -0.196 1.196 18 H -0.197 1.197 19 C 0.345 3.655 20 O -0.435 6.435 21 O -0.270 6.270 22 C -0.061 4.061 23 C -0.056 4.056 24 C -0.199 4.199 25 C -0.171 4.171 26 H 0.075 0.925 27 H 0.108 0.892 28 H 0.086 0.914 29 H 0.060 0.940 30 H 0.078 0.922 31 H 0.118 0.882 32 H 0.066 0.934 33 H 0.240 0.760 34 H 0.082 0.918 35 H 0.056 0.944 36 H 0.145 0.855 37 H 0.097 0.903 38 H 0.086 0.914 39 H 0.117 0.883 40 H 0.064 0.936 41 H 0.078 0.922 42 H 0.111 0.889 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -10.081 -4.667 12.554 16.763 hybrid contribution 0.928 0.181 -0.834 1.260 sum -9.153 -4.487 11.720 15.533 Atomic orbital electron populations 1.21729 0.91938 1.03408 1.03005 1.22778 0.96946 0.83158 1.00467 1.87899 1.18917 1.27598 1.94384 1.23513 0.81963 0.97201 0.94017 0.89205 1.23823 0.97021 0.99284 0.98151 1.20912 0.87886 0.85393 0.98873 1.45787 1.48514 1.05021 1.39034 1.18614 0.77714 0.90565 0.78197 1.90585 1.53130 1.47132 1.59718 1.21394 1.27076 0.91891 1.19860 0.89174 1.26920 0.93259 1.03355 0.94846 1.70203 1.20578 1.34988 1.19236 0.84997 0.78815 0.76244 0.78406 1.16675 1.19574 1.19669 1.23396 0.85317 0.85465 0.71359 1.90516 1.83656 1.18379 1.50930 1.86516 1.23076 1.43975 1.73475 1.23428 0.84439 0.97274 1.00933 1.22426 0.92814 0.97087 0.93258 1.21885 1.01925 1.01324 0.94756 1.21421 0.96984 0.94944 1.03755 0.92462 0.89244 0.91361 0.94012 0.92214 0.88247 0.93378 0.75991 0.91786 0.94439 0.85502 0.90337 0.91420 0.88308 0.93602 0.92238 0.88940 0.91165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.34 10.28 71.98 0.74 -1.60 16 2 C 0.04 0.92 6.50 71.98 0.47 1.39 16 3 O -0.37 -10.04 9.45 -148.98 -1.41 -11.45 16 4 C 0.09 2.87 3.33 31.21 0.10 2.98 16 5 H 0.09 2.86 7.12 -2.39 -0.02 2.85 16 6 C -0.14 -5.75 6.71 31.21 0.21 -5.54 16 7 C 0.16 6.50 1.02 3.38 0.00 6.50 16 8 N -0.73 -32.53 5.01 -428.16 -2.15 -34.68 16 9 C 0.54 31.15 7.31 86.36 0.63 31.79 16 10 O -0.62 -41.12 13.75 -4.30 -0.06 -41.18 16 11 C -0.57 -31.57 9.54 24.83 0.24 -31.34 16 12 H 0.09 4.47 7.85 -2.91 -0.02 4.45 16 13 C 0.03 1.73 5.50 85.30 0.47 2.20 16 14 N -0.82 -50.26 11.83 21.84 0.26 -50.00 16 15 Si 1.00 40.72 29.56 68.60 2.03 42.75 16 16 H -0.24 -9.12 7.11 99.48 0.71 -8.41 16 17 H -0.27 -10.72 7.11 99.48 0.71 -10.02 16 18 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 19 C 0.50 22.70 3.82 71.23 0.27 22.97 16 20 O -0.54 -26.08 15.12 21.99 0.33 -25.75 16 21 O -0.36 -15.60 10.17 -51.24 -0.52 -16.13 16 22 C 0.03 1.13 10.56 113.37 1.20 2.33 16 23 C -0.05 -1.63 1.29 -51.66 -0.07 -1.70 16 24 C -0.14 -3.54 8.30 71.98 0.60 -2.94 16 25 C -0.11 -2.79 7.69 71.98 0.55 -2.24 16 26 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 28 H 0.07 1.03 8.14 -2.38 -0.02 1.01 16 29 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.10 3.94 7.65 -2.39 -0.02 3.92 16 32 H 0.05 2.20 7.63 -2.39 -0.02 2.19 16 33 H 0.40 15.34 6.49 -92.71 -0.60 14.74 16 34 H 0.27 15.18 8.29 -92.71 -0.77 14.41 16 35 H 0.04 1.47 8.13 -2.39 -0.02 1.45 16 36 H 0.13 3.49 8.14 -2.39 -0.02 3.47 16 37 H 0.08 2.29 8.13 -2.38 -0.02 2.27 16 38 H 0.07 1.74 8.14 -2.38 -0.02 1.72 16 39 H 0.10 1.82 8.09 -2.39 -0.02 1.80 16 40 H 0.04 1.21 7.35 -2.39 -0.02 1.19 16 41 H 0.06 1.59 7.19 -2.39 -0.02 1.58 16 42 H 0.09 1.79 8.11 -2.39 -0.02 1.77 16 43 H 0.07 1.61 6.71 -2.39 -0.02 1.60 16 Total: -1.00 -79.95 353.80 4.31 -75.64 By element: Atomic # 1 Polarization: 35.58 SS G_CDS: 0.41 Total: 35.98 kcal Atomic # 6 Polarization: 19.40 SS G_CDS: 5.42 Total: 24.81 kcal Atomic # 7 Polarization: -82.80 SS G_CDS: -1.89 Total: -84.68 kcal Atomic # 8 Polarization: -92.85 SS G_CDS: -1.66 Total: -94.51 kcal Atomic # 14 Polarization: 40.72 SS G_CDS: 2.03 Total: 42.75 kcal Total: -79.95 4.31 -75.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332077650.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.425 kcal (2) G-P(sol) polarization free energy of solvation -79.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.00 seconds