Wall clock time and date at job start Tue Mar 31 2020 05:26:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.46981 * 2 1 4 4 N 1.46897 * 109.46975 * 119.99980 * 2 1 3 5 5 C 1.47007 * 111.00417 * 298.95495 * 4 2 1 6 6 C 1.53093 * 109.26140 * 182.39312 * 5 4 2 7 7 O 1.43011 * 109.25722 * 303.15144 * 6 5 4 8 8 C 1.43017 * 113.74182 * 58.67119 * 7 6 5 9 9 H 1.09000 * 109.50499 * 61.30655 * 8 7 6 10 10 C 1.50698 * 109.51103 * 181.39712 * 8 7 6 11 11 O 1.21283 * 120.00057 * 4.99426 * 10 8 7 12 12 N 1.34772 * 119.99864 * 185.00146 * 10 8 7 13 13 C 1.46509 * 119.99923 * 179.97438 * 12 10 8 14 14 C 1.50698 * 109.47002 * 179.97438 * 13 12 10 15 15 O 1.21293 * 120.00006 * 0.02562 * 14 13 12 16 16 N 1.34777 * 119.99538 * 179.97438 * 14 13 12 17 17 C 1.37104 * 119.99773 * 179.72591 * 16 14 13 18 18 H 1.08002 * 119.99671 * 0.27660 * 17 16 14 19 19 C 1.38950 * 120.00030 * 180.27703 * 17 16 14 20 20 N 1.31413 * 119.99930 * 179.97438 * 19 17 16 21 21 Si 1.86800 * 119.99918 * 0.02562 * 19 17 16 22 22 H 1.48498 * 109.47112 * 89.99702 * 21 19 17 23 23 H 1.48498 * 109.47011 * 209.99970 * 21 19 17 24 24 H 1.48494 * 109.47201 * 329.99943 * 21 19 17 25 25 C 1.47020 * 111.00017 * 62.59399 * 4 2 1 26 26 H 1.09002 * 109.47415 * 300.00081 * 1 2 3 27 27 H 1.09006 * 109.47150 * 59.99740 * 1 2 3 28 28 H 1.08999 * 109.47278 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47073 * 240.00462 * 2 1 3 30 30 H 1.09008 * 109.46675 * 60.00281 * 3 2 1 31 31 H 1.09002 * 109.47025 * 179.97438 * 3 2 1 32 32 H 1.08992 * 109.47321 * 300.00240 * 3 2 1 33 33 H 1.08999 * 109.50882 * 62.45396 * 5 4 2 34 34 H 1.09002 * 109.54147 * 302.34898 * 5 4 2 35 35 H 1.09002 * 109.50757 * 183.21645 * 6 5 4 36 36 H 1.09000 * 109.50729 * 63.08748 * 6 5 4 37 37 H 0.97003 * 120.00202 * 359.97438 * 12 10 8 38 38 H 1.09003 * 109.46564 * 59.99951 * 13 12 10 39 39 H 1.08993 * 109.46901 * 300.00286 * 13 12 10 40 40 H 0.97001 * 120.00485 * 0.02562 * 16 14 13 41 41 H 0.96999 * 119.99993 * 179.97438 * 20 19 17 42 42 H 1.08997 * 109.50906 * 57.66674 * 25 4 2 43 43 H 1.09003 * 109.49737 * 297.54134 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 1.5688 -0.0116 2.4219 6 6 2.1493 -0.7296 3.6431 7 8 1.7565 -2.1043 3.6129 8 6 2.1798 -2.7984 2.4362 9 1 3.2683 -2.7909 2.3810 10 6 1.6883 -4.2220 2.4874 11 8 0.9640 -4.5814 3.3915 12 7 2.0536 -5.0959 1.5286 13 6 1.5762 -6.4802 1.5787 14 6 2.1240 -7.2433 0.4004 15 8 2.8429 -6.6860 -0.4020 16 7 1.8160 -8.5455 0.2388 17 6 2.3098 -9.2384 -0.8362 18 1 2.9493 -8.7419 -1.5511 19 6 1.9876 -10.5793 -1.0060 20 7 2.4605 -11.2433 -2.0367 21 14 0.8810 -11.4377 0.2301 22 1 -0.5354 -11.3000 -0.1942 23 1 1.2393 -12.8771 0.2994 24 1 1.0593 -10.8183 1.5679 25 6 1.5996 -2.1014 1.2027 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5137 -0.8900 30 1 1.6766 1.9563 0.8901 31 1 3.1300 1.4425 0.0005 32 1 1.6766 1.9564 -0.8899 33 1 0.4801 -0.0334 2.4703 34 1 1.9120 1.0229 2.4107 35 1 1.7718 -0.2631 4.5530 36 1 3.2370 -0.6612 3.6226 37 1 2.6326 -4.8084 0.8054 38 1 0.4868 -6.4902 1.5430 39 1 1.9138 -6.9476 2.5036 40 1 1.2414 -8.9913 0.8807 41 1 2.2359 -12.1795 -2.1550 42 1 1.9657 -2.5925 0.3012 43 1 0.5113 -2.1565 1.2316 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343505456.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:01 Heat of formation + Delta-G solvation = -103.386021 kcal Electronic energy + Delta-G solvation = -24697.816927 eV Core-core repulsion = 20971.558460 eV Total energy + Delta-G solvation = -3726.258467 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.168 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.61055 -39.24981 -38.24545 -36.93226 -34.57654 -33.82592 -32.26527 -31.84142 -31.64799 -28.45978 -27.58199 -26.68759 -24.72408 -24.17541 -22.29401 -20.28873 -19.82897 -19.66545 -18.72652 -17.51555 -16.89407 -16.39522 -15.92074 -15.69390 -15.36887 -15.12407 -14.97756 -14.90695 -14.65819 -14.47991 -14.10147 -13.65091 -13.34533 -13.24445 -12.90705 -12.50367 -12.46758 -12.30437 -12.26737 -12.20327 -11.96387 -11.67944 -11.40893 -11.25401 -11.07135 -10.91226 -10.66019 -10.08594 -9.94107 -9.72326 -9.68115 -8.96096 -8.80878 -8.67823 -8.33060 -6.43051 -3.95801 2.60403 2.79038 2.98181 3.02921 3.11364 3.41738 3.53047 3.92319 4.01762 4.43504 4.51346 4.55516 4.57621 4.77111 4.80021 4.80685 4.93349 4.98076 5.10896 5.11930 5.22344 5.25943 5.32549 5.45913 5.49195 5.53747 5.58210 5.63347 5.68630 5.74562 5.77598 5.83134 5.93678 6.46891 6.59512 6.65592 6.83895 7.41479 7.65054 7.97560 8.28430 8.42910 8.79125 9.27206 9.60202 10.69036 Molecular weight = 299.17amu Principal moments of inertia in cm(-1) A = 0.024638 B = 0.002955 C = 0.002758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.167954 B = 9474.734910 C =10148.092754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.074 3.926 3 C -0.145 4.145 4 N -0.527 5.527 5 C 0.008 3.992 6 C 0.063 3.937 7 O -0.356 6.356 8 C 0.081 3.919 9 H 0.095 0.905 10 C 0.520 3.480 11 O -0.526 6.526 12 N -0.704 5.704 13 C 0.107 3.893 14 C 0.438 3.562 15 O -0.579 6.579 16 N -0.575 5.575 17 C -0.311 4.311 18 H 0.122 0.878 19 C 0.046 3.954 20 N -0.874 5.874 21 Si 0.879 3.121 22 H -0.269 1.269 23 H -0.275 1.275 24 H -0.267 1.267 25 C 0.026 3.974 26 H 0.058 0.942 27 H 0.063 0.937 28 H 0.059 0.941 29 H 0.089 0.911 30 H 0.055 0.945 31 H 0.065 0.935 32 H 0.061 0.939 33 H 0.048 0.952 34 H 0.091 0.909 35 H 0.102 0.898 36 H 0.061 0.939 37 H 0.413 0.587 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.375 0.625 41 H 0.276 0.724 42 H 0.096 0.904 43 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.881 22.507 7.886 24.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.034 4.034 3 C -0.203 4.203 4 N -0.252 5.252 5 C -0.120 4.120 6 C -0.015 4.015 7 O -0.274 6.274 8 C 0.020 3.980 9 H 0.112 0.888 10 C 0.304 3.696 11 O -0.402 6.402 12 N -0.360 5.360 13 C -0.020 4.020 14 C 0.224 3.776 15 O -0.463 6.463 16 N -0.213 5.213 17 C -0.439 4.439 18 H 0.140 0.860 19 C -0.159 4.159 20 N -0.512 5.512 21 Si 0.705 3.295 22 H -0.194 1.194 23 H -0.200 1.200 24 H -0.192 1.192 25 C -0.103 4.103 26 H 0.077 0.923 27 H 0.082 0.918 28 H 0.078 0.922 29 H 0.107 0.893 30 H 0.074 0.926 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.067 0.933 34 H 0.109 0.891 35 H 0.120 0.880 36 H 0.080 0.920 37 H 0.251 0.749 38 H 0.104 0.896 39 H 0.105 0.895 40 H 0.208 0.792 41 H 0.086 0.914 42 H 0.114 0.886 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.490 22.306 8.004 23.829 hybrid contribution -1.358 -0.667 0.283 1.539 sum -3.848 21.639 8.286 23.489 Atomic orbital electron populations 1.22501 0.97369 1.02501 1.02491 1.21755 0.92942 0.95553 0.93117 1.21879 1.02014 0.94594 1.01772 1.62478 1.59085 1.01453 1.02169 1.22922 0.99178 0.99380 0.90532 1.22747 0.99660 0.81419 0.97633 1.88115 1.78318 1.22239 1.38699 1.21878 0.99929 0.89953 0.86267 0.88782 1.19970 0.81124 0.86377 0.82172 1.90714 1.36065 1.78904 1.34488 1.45582 1.52150 1.10019 1.28276 1.20994 0.99999 0.82089 0.98933 1.19599 0.86537 0.83167 0.88325 1.90541 1.41130 1.68305 1.46315 1.42125 1.45120 1.09118 1.24928 1.19444 1.29087 0.93211 1.02160 0.86045 1.25068 0.97630 0.96228 0.96944 1.69617 1.43414 1.10347 1.27871 0.86672 0.81357 0.80370 0.81114 1.19388 1.19957 1.19194 1.22715 0.99688 0.89453 0.98444 0.92335 0.91758 0.92185 0.89320 0.92579 0.91630 0.92025 0.93345 0.89088 0.88007 0.92024 0.74890 0.89604 0.89532 0.79216 0.91352 0.88566 0.92741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.50 8.50 37.16 0.32 -1.18 16 2 C 0.07 0.60 2.99 -67.71 -0.20 0.39 16 3 C -0.15 -0.93 8.93 37.16 0.33 -0.60 16 4 N -0.53 -4.91 4.73 -226.34 -1.07 -5.98 16 5 C 0.01 0.07 4.87 -3.72 -0.02 0.05 16 6 C 0.06 0.57 7.01 37.21 0.26 0.83 16 7 O -0.36 -4.78 10.01 -55.06 -0.55 -5.33 16 8 C 0.08 1.03 3.22 -27.83 -0.09 0.94 16 9 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 10 C 0.52 8.13 7.18 -10.99 -0.08 8.05 16 11 O -0.53 -10.10 16.51 -14.27 -0.24 -10.34 16 12 N -0.70 -10.98 5.49 -61.47 -0.34 -11.31 16 13 C 0.11 1.83 6.15 -5.19 -0.03 1.80 16 14 C 0.44 9.43 7.85 -10.99 -0.09 9.34 16 15 O -0.58 -14.25 15.24 5.55 0.08 -14.17 16 16 N -0.58 -13.19 5.09 -10.96 -0.06 -13.25 16 17 C -0.31 -8.47 10.16 -14.93 -0.15 -8.62 16 18 H 0.12 3.77 7.39 -52.49 -0.39 3.38 16 19 C 0.05 1.21 5.50 -17.47 -0.10 1.12 16 20 N -0.87 -24.77 13.96 55.50 0.77 -24.00 16 21 Si 0.88 18.86 27.74 -169.99 -4.71 14.15 16 22 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 23 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 24 H -0.27 -5.24 6.52 56.52 0.37 -4.87 16 25 C 0.03 0.28 4.50 -3.71 -0.02 0.26 16 26 H 0.06 0.46 6.48 -51.93 -0.34 0.12 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.55 6.51 -51.93 -0.34 0.21 16 29 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.06 0.33 6.34 -51.92 -0.33 0.00 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.05 0.44 6.46 -51.93 -0.34 0.10 16 34 H 0.09 0.60 6.16 -51.93 -0.32 0.28 16 35 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 37 H 0.41 6.22 7.32 -40.82 -0.30 5.92 16 38 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 39 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 40 H 0.37 7.59 5.76 -40.82 -0.24 7.35 16 41 H 0.28 7.21 8.31 -40.82 -0.34 6.87 16 42 H 0.10 1.01 8.02 -51.93 -0.42 0.59 16 43 H 0.05 0.65 6.50 -51.93 -0.34 0.31 16 LS Contribution 344.89 15.07 5.20 5.20 Total: -1.00 -32.85 344.89 -7.08 -39.93 By element: Atomic # 1 Polarization: 19.04 SS G_CDS: -6.31 Total: 12.73 kcal Atomic # 6 Polarization: 12.24 SS G_CDS: 0.14 Total: 12.38 kcal Atomic # 7 Polarization: -53.86 SS G_CDS: -0.69 Total: -54.55 kcal Atomic # 8 Polarization: -29.13 SS G_CDS: -0.70 Total: -29.84 kcal Atomic # 14 Polarization: 18.86 SS G_CDS: -4.71 Total: 14.15 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -32.85 -7.08 -39.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343505456.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.457 kcal (2) G-P(sol) polarization free energy of solvation -32.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds