Wall clock time and date at job start Tue Mar 31 2020 05:26:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.46981 * 2 1 4 4 N 1.46897 * 109.46975 * 119.99980 * 2 1 3 5 5 C 1.47007 * 111.00417 * 298.95495 * 4 2 1 6 6 C 1.53093 * 109.26140 * 182.39312 * 5 4 2 7 7 O 1.43011 * 109.25722 * 303.15144 * 6 5 4 8 8 C 1.43017 * 113.74182 * 58.67119 * 7 6 5 9 9 H 1.09000 * 109.50499 * 61.30655 * 8 7 6 10 10 C 1.50698 * 109.51103 * 181.39712 * 8 7 6 11 11 O 1.21283 * 120.00057 * 4.99426 * 10 8 7 12 12 N 1.34772 * 119.99864 * 185.00146 * 10 8 7 13 13 C 1.46509 * 119.99923 * 179.97438 * 12 10 8 14 14 C 1.50698 * 109.47002 * 179.97438 * 13 12 10 15 15 O 1.21293 * 120.00006 * 0.02562 * 14 13 12 16 16 N 1.34777 * 119.99538 * 179.97438 * 14 13 12 17 17 C 1.37104 * 119.99773 * 179.72591 * 16 14 13 18 18 H 1.08002 * 119.99671 * 0.27660 * 17 16 14 19 19 C 1.38950 * 120.00030 * 180.27703 * 17 16 14 20 20 N 1.31413 * 119.99930 * 179.97438 * 19 17 16 21 21 Si 1.86800 * 119.99918 * 0.02562 * 19 17 16 22 22 H 1.48498 * 109.47112 * 89.99702 * 21 19 17 23 23 H 1.48498 * 109.47011 * 209.99970 * 21 19 17 24 24 H 1.48494 * 109.47201 * 329.99943 * 21 19 17 25 25 C 1.47020 * 111.00017 * 62.59399 * 4 2 1 26 26 H 1.09002 * 109.47415 * 300.00081 * 1 2 3 27 27 H 1.09006 * 109.47150 * 59.99740 * 1 2 3 28 28 H 1.08999 * 109.47278 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47073 * 240.00462 * 2 1 3 30 30 H 1.09008 * 109.46675 * 60.00281 * 3 2 1 31 31 H 1.09002 * 109.47025 * 179.97438 * 3 2 1 32 32 H 1.08992 * 109.47321 * 300.00240 * 3 2 1 33 33 H 1.08999 * 109.50882 * 62.45396 * 5 4 2 34 34 H 1.09002 * 109.54147 * 302.34898 * 5 4 2 35 35 H 1.09002 * 109.50757 * 183.21645 * 6 5 4 36 36 H 1.09000 * 109.50729 * 63.08748 * 6 5 4 37 37 H 0.97003 * 120.00202 * 359.97438 * 12 10 8 38 38 H 1.09003 * 109.46564 * 59.99951 * 13 12 10 39 39 H 1.08993 * 109.46901 * 300.00286 * 13 12 10 40 40 H 0.97001 * 120.00485 * 0.02562 * 16 14 13 41 41 H 0.96999 * 119.99993 * 179.97438 * 20 19 17 42 42 H 1.08997 * 109.50906 * 57.66674 * 25 4 2 43 43 H 1.09003 * 109.49737 * 297.54134 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 1.5688 -0.0116 2.4219 6 6 2.1493 -0.7296 3.6431 7 8 1.7565 -2.1043 3.6129 8 6 2.1798 -2.7984 2.4362 9 1 3.2683 -2.7909 2.3810 10 6 1.6883 -4.2220 2.4874 11 8 0.9640 -4.5814 3.3915 12 7 2.0536 -5.0959 1.5286 13 6 1.5762 -6.4802 1.5787 14 6 2.1240 -7.2433 0.4004 15 8 2.8429 -6.6860 -0.4020 16 7 1.8160 -8.5455 0.2388 17 6 2.3098 -9.2384 -0.8362 18 1 2.9493 -8.7419 -1.5511 19 6 1.9876 -10.5793 -1.0060 20 7 2.4605 -11.2433 -2.0367 21 14 0.8810 -11.4377 0.2301 22 1 -0.5354 -11.3000 -0.1942 23 1 1.2393 -12.8771 0.2994 24 1 1.0593 -10.8183 1.5679 25 6 1.5996 -2.1014 1.2027 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5137 -0.8900 30 1 1.6766 1.9563 0.8901 31 1 3.1300 1.4425 0.0005 32 1 1.6766 1.9564 -0.8899 33 1 0.4801 -0.0334 2.4703 34 1 1.9120 1.0229 2.4107 35 1 1.7718 -0.2631 4.5530 36 1 3.2370 -0.6612 3.6226 37 1 2.6326 -4.8084 0.8054 38 1 0.4868 -6.4902 1.5430 39 1 1.9138 -6.9476 2.5036 40 1 1.2414 -8.9913 0.8807 41 1 2.2359 -12.1795 -2.1550 42 1 1.9657 -2.5925 0.3012 43 1 0.5113 -2.1565 1.2316 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343505456.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:00 Heat of formation + Delta-G solvation = -130.138587 kcal Electronic energy + Delta-G solvation = -24698.977005 eV Core-core repulsion = 20971.558460 eV Total energy + Delta-G solvation = -3727.418545 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.168 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.63117 -40.60459 -39.74136 -37.77512 -36.30871 -35.41933 -33.84947 -33.08960 -32.44201 -29.75727 -28.21097 -27.78877 -26.15914 -25.32577 -23.13865 -21.50578 -21.46601 -20.59693 -20.48245 -18.80328 -17.95375 -17.43476 -17.21374 -16.96863 -16.61136 -16.47381 -16.25968 -15.90978 -15.78861 -15.39476 -15.13438 -14.98898 -14.87851 -14.36893 -14.09569 -13.94092 -13.77749 -13.65926 -13.14002 -12.98374 -12.94737 -12.75794 -12.44870 -12.37758 -12.08046 -12.00813 -11.79870 -11.59441 -11.58516 -10.95000 -10.76102 -10.66767 -10.35230 -10.25705 -9.41413 -8.45885 -6.07845 1.30890 1.33628 1.38981 1.43434 1.63358 1.78516 2.20115 2.65106 2.77444 3.03725 3.10412 3.59887 3.66111 3.87014 3.92600 3.95011 3.99976 4.16386 4.22009 4.31194 4.37539 4.38620 4.43164 4.50409 4.63720 4.66758 4.74166 4.85878 4.90454 4.98835 5.05309 5.14188 5.26165 5.36667 5.47639 5.85563 5.87772 5.97173 5.99880 6.40268 6.47880 6.77760 7.03108 7.28710 7.76941 8.70489 Molecular weight = 299.17amu Principal moments of inertia in cm(-1) A = 0.024638 B = 0.002955 C = 0.002758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.167954 B = 9474.734910 C =10148.092754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.071 3.929 3 C -0.140 4.140 4 N -0.529 5.529 5 C 0.010 3.990 6 C 0.057 3.943 7 O -0.384 6.384 8 C 0.087 3.913 9 H 0.109 0.891 10 C 0.523 3.477 11 O -0.562 6.562 12 N -0.702 5.702 13 C 0.117 3.883 14 C 0.446 3.554 15 O -0.612 6.612 16 N -0.578 5.578 17 C -0.331 4.331 18 H 0.065 0.935 19 C -0.007 4.007 20 N -0.926 5.926 21 Si 0.958 3.042 22 H -0.257 1.257 23 H -0.274 1.274 24 H -0.233 1.233 25 C 0.032 3.968 26 H 0.060 0.940 27 H 0.074 0.926 28 H 0.043 0.957 29 H 0.083 0.917 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.071 0.929 33 H 0.041 0.959 34 H 0.114 0.886 35 H 0.121 0.879 36 H 0.071 0.929 37 H 0.416 0.584 38 H 0.106 0.894 39 H 0.105 0.895 40 H 0.392 0.608 41 H 0.281 0.719 42 H 0.097 0.903 43 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.928 23.829 9.893 26.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.037 4.037 3 C -0.197 4.197 4 N -0.254 5.254 5 C -0.118 4.118 6 C -0.019 4.019 7 O -0.303 6.303 8 C 0.026 3.974 9 H 0.127 0.873 10 C 0.309 3.691 11 O -0.440 6.440 12 N -0.358 5.358 13 C -0.010 4.010 14 C 0.234 3.766 15 O -0.498 6.498 16 N -0.218 5.218 17 C -0.460 4.460 18 H 0.083 0.917 19 C -0.207 4.207 20 N -0.565 5.565 21 Si 0.778 3.222 22 H -0.181 1.181 23 H -0.199 1.199 24 H -0.156 1.156 25 C -0.097 4.097 26 H 0.079 0.921 27 H 0.093 0.907 28 H 0.062 0.938 29 H 0.101 0.899 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.090 0.910 33 H 0.060 0.940 34 H 0.132 0.868 35 H 0.139 0.861 36 H 0.089 0.911 37 H 0.255 0.745 38 H 0.124 0.876 39 H 0.123 0.877 40 H 0.228 0.772 41 H 0.091 0.909 42 H 0.116 0.884 43 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -3.528 23.668 10.013 25.941 hybrid contribution -0.957 -0.940 -0.402 1.400 sum -4.485 22.728 9.611 25.081 Atomic orbital electron populations 1.22461 0.97297 1.01604 1.03101 1.21835 0.92999 0.96456 0.92367 1.21840 1.01837 0.93339 1.02675 1.62515 1.59109 1.00655 1.03087 1.22966 0.98770 1.00307 0.89724 1.23020 1.00437 0.79575 0.98892 1.88074 1.78906 1.24330 1.38957 1.21815 1.00516 0.88131 0.86934 0.87338 1.20469 0.80165 0.87364 0.81123 1.90692 1.37763 1.79714 1.35821 1.45586 1.52094 1.09582 1.28503 1.20919 1.00877 0.82262 0.96933 1.20424 0.84822 0.82746 0.88631 1.90532 1.42277 1.69040 1.47907 1.41930 1.45849 1.09541 1.24445 1.19036 1.29748 0.94081 1.03098 0.91703 1.26049 0.99021 0.96462 0.99193 1.69777 1.45312 1.11056 1.30391 0.85459 0.78824 0.78635 0.79310 1.18122 1.19880 1.15611 1.22596 0.98775 0.90688 0.97625 0.92111 0.90743 0.93813 0.89858 0.91800 0.91814 0.91032 0.94039 0.86815 0.86123 0.91084 0.74548 0.87627 0.87664 0.77231 0.90916 0.88449 0.93996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.71 8.50 71.98 0.61 -2.10 16 2 C 0.07 1.04 2.99 44.92 0.13 1.17 16 3 C -0.14 -1.47 8.93 71.98 0.64 -0.83 16 4 N -0.53 -9.01 4.73 -870.00 -4.12 -13.13 16 5 C 0.01 0.15 4.87 86.31 0.42 0.57 16 6 C 0.06 0.92 7.01 72.01 0.50 1.43 16 7 O -0.38 -9.81 10.01 -130.02 -1.30 -11.11 16 8 C 0.09 2.10 3.22 29.88 0.10 2.20 16 9 H 0.11 2.28 8.14 -2.39 -0.02 2.26 16 10 C 0.52 15.79 7.18 87.66 0.63 16.42 16 11 O -0.56 -20.95 16.51 15.92 0.26 -20.68 16 12 N -0.70 -21.08 5.49 -466.78 -2.56 -23.65 16 13 C 0.12 3.78 6.15 85.63 0.53 4.31 16 14 C 0.45 19.03 7.85 87.66 0.69 19.72 16 15 O -0.61 -30.71 15.24 -3.07 -0.05 -30.75 16 16 N -0.58 -26.17 5.09 -306.98 -1.56 -27.74 16 17 C -0.33 -18.56 10.16 84.04 0.85 -17.71 16 18 H 0.06 4.29 7.39 -2.91 -0.02 4.27 16 19 C -0.01 -0.39 5.50 84.93 0.47 0.08 16 20 N -0.93 -54.06 13.96 21.66 0.30 -53.76 16 21 Si 0.96 37.86 27.74 68.60 1.90 39.76 16 22 H -0.26 -9.68 7.11 99.48 0.71 -8.97 16 23 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 24 H -0.23 -7.86 6.52 99.48 0.65 -7.21 16 25 C 0.03 0.67 4.50 86.31 0.39 1.06 16 26 H 0.06 0.85 6.48 -2.39 -0.02 0.84 16 27 H 0.07 0.92 8.14 -2.38 -0.02 0.90 16 28 H 0.04 0.78 6.51 -2.39 -0.02 0.76 16 29 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.06 0.58 6.34 -2.38 -0.02 0.56 16 31 H 0.06 0.71 8.14 -2.39 -0.02 0.70 16 32 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.04 0.68 6.46 -2.39 -0.02 0.66 16 34 H 0.11 1.15 6.16 -2.39 -0.01 1.13 16 35 H 0.12 1.46 8.14 -2.39 -0.02 1.45 16 36 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.42 12.27 7.32 -92.71 -0.68 11.59 16 38 H 0.11 3.08 8.14 -2.39 -0.02 3.06 16 39 H 0.11 3.10 8.14 -2.39 -0.02 3.08 16 40 H 0.39 14.92 5.76 -92.71 -0.53 14.38 16 41 H 0.28 15.02 8.31 -92.71 -0.77 14.25 16 42 H 0.10 1.98 8.02 -2.39 -0.02 1.96 16 43 H 0.04 0.98 6.50 -2.39 -0.02 0.97 16 Total: -1.00 -73.90 344.89 -1.39 -75.29 By element: Atomic # 1 Polarization: 39.68 SS G_CDS: -0.23 Total: 39.45 kcal Atomic # 6 Polarization: 20.36 SS G_CDS: 5.96 Total: 26.32 kcal Atomic # 7 Polarization: -110.33 SS G_CDS: -7.94 Total: -118.28 kcal Atomic # 8 Polarization: -61.46 SS G_CDS: -1.09 Total: -62.55 kcal Atomic # 14 Polarization: 37.86 SS G_CDS: 1.90 Total: 39.76 kcal Total: -73.90 -1.39 -75.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343505456.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.845 kcal (2) G-P(sol) polarization free energy of solvation -73.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds