Wall clock time and date at job start Tue Mar 31 2020 05:07:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42897 * 114.00519 * 2 1 4 4 H 1.09000 * 112.90608 * 341.25520 * 3 2 1 5 5 C 1.53948 * 113.66754 * 112.55109 * 3 2 1 6 6 C 1.53780 * 87.11633 * 139.89497 * 5 3 2 7 7 H 1.08994 * 113.61871 * 220.09800 * 6 5 3 8 8 N 1.46496 * 113.69174 * 89.19450 * 6 5 3 9 9 C 1.34779 * 119.99821 * 107.47265 * 8 6 5 10 10 O 1.21589 * 119.99986 * 359.97438 * 9 8 6 11 11 N 1.34777 * 119.99879 * 180.02562 * 9 8 6 12 12 C 1.46503 * 119.99717 * 180.02562 * 11 9 8 13 13 C 1.50702 * 109.46990 * 179.97438 * 12 11 9 14 14 O 1.21296 * 119.99785 * 359.97438 * 13 12 11 15 15 N 1.34777 * 119.99717 * 179.97438 * 13 12 11 16 16 C 1.37096 * 119.99664 * 179.97438 * 15 13 12 17 17 H 1.08002 * 120.00227 * 0.02562 * 16 15 13 18 18 C 1.38952 * 120.00130 * 180.02562 * 16 15 13 19 19 N 1.31408 * 119.99787 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00093 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47216 * 359.97438 * 20 18 16 22 22 H 1.48493 * 109.47339 * 120.00241 * 20 18 16 23 23 H 1.48500 * 109.46814 * 239.99953 * 20 18 16 24 24 C 1.53780 * 113.61931 * 210.00031 * 3 2 1 25 25 C 1.53006 * 113.61448 * 105.46704 * 24 3 2 26 26 C 1.52999 * 113.61453 * 334.65368 * 24 3 2 27 27 H 1.09002 * 109.46759 * 300.00168 * 1 2 3 28 28 H 1.08999 * 109.47399 * 59.99357 * 1 2 3 29 29 H 1.08995 * 109.47372 * 180.02562 * 1 2 3 30 30 H 1.09005 * 113.54029 * 25.34125 * 5 3 2 31 31 H 1.09010 * 113.74678 * 254.47505 * 5 3 2 32 32 H 0.96998 * 120.00283 * 287.46878 * 8 6 5 33 33 H 0.96998 * 120.00226 * 359.97438 * 11 9 8 34 34 H 1.09001 * 109.46589 * 299.99507 * 12 11 9 35 35 H 1.08998 * 109.47539 * 59.99411 * 12 11 9 36 36 H 0.96989 * 120.00105 * 0.02562 * 15 13 12 37 37 H 0.96999 * 119.99885 * 180.02562 * 19 18 16 38 38 H 1.08995 * 109.47299 * 279.14367 * 25 24 3 39 39 H 1.09004 * 109.46791 * 39.13858 * 25 24 3 40 40 H 1.08991 * 109.46960 * 159.13712 * 25 24 3 41 41 H 1.08993 * 109.47603 * 200.86038 * 26 24 3 42 42 H 1.09000 * 109.46814 * 320.86477 * 26 24 3 43 43 H 1.09002 * 109.47143 * 80.85926 * 26 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3143 2.0797 -0.3227 5 6 2.7557 1.6499 1.3022 6 6 3.8254 2.3173 0.4218 7 1 4.8452 2.1373 0.7617 8 7 3.5600 3.7307 0.1425 9 6 4.3029 4.6860 0.7358 10 8 5.1931 4.3746 1.5033 11 7 4.0584 5.9863 0.4793 12 6 4.8663 7.0246 1.1238 13 6 4.3937 8.3821 0.6712 14 8 3.4729 8.4733 -0.1131 15 7 4.9943 9.4948 1.1378 16 6 4.5647 10.7297 0.7256 17 1 3.7448 10.8110 0.0273 18 6 5.1841 11.8770 1.2062 19 7 6.1820 11.7781 2.0555 20 14 4.5983 13.5596 0.6451 21 1 3.4692 13.3989 -0.3061 22 1 4.1468 14.3444 1.8221 23 1 5.7136 14.2732 -0.0273 24 6 3.3756 1.3718 -0.7045 25 6 3.3235 2.0388 -2.0805 26 6 4.1232 0.0370 -0.7193 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 3.1178 0.7744 1.8412 31 1 2.2191 2.3496 1.9432 32 1 2.8496 3.9791 -0.4695 33 1 3.3479 6.2347 -0.1327 34 1 4.7630 6.9457 2.2061 35 1 5.9128 6.8940 0.8483 36 1 5.7308 9.4218 1.7646 37 1 6.6142 12.5790 2.3913 38 1 2.9723 1.3193 -2.8201 39 1 2.6407 2.8879 -2.0470 40 1 4.3201 2.3846 -2.3546 41 1 5.1858 0.2174 -0.8811 42 1 3.9818 -0.4692 0.2356 43 1 3.7344 -0.5883 -1.5231 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345083459.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:05 Heat of formation + Delta-G solvation = -93.812364 kcal Electronic energy + Delta-G solvation = -24260.297250 eV Core-core repulsion = 20534.453928 eV Total energy + Delta-G solvation = -3725.843322 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.168 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.96269 -39.34847 -38.13233 -36.77339 -34.41634 -33.67618 -33.18375 -31.37747 -30.70881 -27.90605 -27.47774 -26.99283 -24.72634 -23.88799 -22.76716 -20.76871 -19.61582 -19.05270 -18.39461 -17.88812 -16.92636 -16.13602 -15.72491 -15.68654 -15.45554 -15.31772 -14.75139 -14.60783 -14.16599 -14.03093 -13.80472 -13.51272 -13.41691 -13.28023 -12.87807 -12.44703 -12.32805 -12.18819 -12.04416 -11.81708 -11.66872 -11.63962 -11.20255 -11.15088 -10.92975 -10.43792 -10.41618 -10.33318 -10.04727 -9.65278 -9.62686 -9.13493 -8.63266 -8.62642 -8.10544 -6.51967 -3.93956 2.74261 3.09686 3.22003 3.28631 3.34672 3.50347 3.74524 4.06724 4.08758 4.24572 4.37836 4.57729 4.62329 4.89498 4.91961 4.98400 5.07890 5.10424 5.16872 5.33127 5.40696 5.43844 5.47944 5.60727 5.67567 5.73966 5.76813 5.83253 5.93904 6.00378 6.05245 6.07919 6.12096 6.54036 6.73783 6.94197 7.07720 7.45707 7.92148 8.21311 8.44672 8.78018 9.04275 9.39172 9.86922 10.65023 Molecular weight = 299.17amu Principal moments of inertia in cm(-1) A = 0.033673 B = 0.002433 C = 0.002379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.319830 B =11507.439620 C =11767.264641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.372 6.372 3 C 0.068 3.932 4 H 0.086 0.914 5 C -0.169 4.169 6 C 0.152 3.848 7 H 0.111 0.889 8 N -0.731 5.731 9 C 0.707 3.293 10 O -0.595 6.595 11 N -0.724 5.724 12 C 0.129 3.871 13 C 0.429 3.571 14 O -0.598 6.598 15 N -0.549 5.549 16 C -0.304 4.304 17 H 0.106 0.894 18 C 0.025 3.975 19 N -0.894 5.894 20 Si 0.932 3.068 21 H -0.267 1.267 22 H -0.280 1.280 23 H -0.280 1.280 24 C -0.089 4.089 25 C -0.137 4.137 26 C -0.116 4.116 27 H 0.041 0.959 28 H 0.040 0.960 29 H 0.083 0.917 30 H 0.098 0.902 31 H 0.074 0.926 32 H 0.395 0.605 33 H 0.406 0.594 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.396 0.604 37 H 0.274 0.726 38 H 0.059 0.941 39 H 0.054 0.946 40 H 0.064 0.936 41 H 0.058 0.942 42 H 0.063 0.937 43 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.148 -21.517 -4.330 23.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.290 6.290 3 C 0.010 3.990 4 H 0.104 0.896 5 C -0.208 4.208 6 C 0.045 3.955 7 H 0.129 0.871 8 N -0.386 5.386 9 C 0.407 3.593 10 O -0.473 6.473 11 N -0.381 5.381 12 C 0.000 4.000 13 C 0.214 3.786 14 O -0.485 6.485 15 N -0.184 5.184 16 C -0.434 4.434 17 H 0.123 0.877 18 C -0.178 4.178 19 N -0.534 5.534 20 Si 0.759 3.241 21 H -0.192 1.192 22 H -0.206 1.206 23 H -0.206 1.206 24 C -0.091 4.091 25 C -0.195 4.195 26 C -0.173 4.173 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.102 0.898 30 H 0.117 0.883 31 H 0.093 0.907 32 H 0.230 0.770 33 H 0.243 0.757 34 H 0.100 0.900 35 H 0.100 0.900 36 H 0.230 0.770 37 H 0.084 0.916 38 H 0.078 0.922 39 H 0.073 0.927 40 H 0.083 0.917 41 H 0.077 0.923 42 H 0.083 0.917 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -6.691 -21.685 -4.039 23.050 hybrid contribution -0.746 1.389 -0.342 1.614 sum -7.438 -20.295 -4.381 22.055 Atomic orbital electron populations 1.22780 0.81444 1.02597 0.99940 1.87928 1.19296 1.27260 1.94542 1.24006 0.93322 0.85100 0.96526 0.89647 1.24008 0.98275 1.01209 0.97312 1.21516 1.00112 0.78784 0.95052 0.87118 1.44756 1.38662 1.04659 1.50546 1.15825 0.81918 0.80707 0.80881 1.90906 1.34543 1.81759 1.40137 1.44768 1.39440 1.03377 1.50535 1.20790 0.95213 0.86104 0.97877 1.19767 0.86793 0.85437 0.86556 1.90489 1.32319 1.86572 1.39139 1.41795 1.31465 1.04828 1.40335 1.19771 1.16778 0.81420 1.25400 0.87651 1.25330 0.95894 1.00280 0.96271 1.69622 1.22390 1.30724 1.30709 0.85758 0.78731 0.81052 0.78544 1.19155 1.20613 1.20612 1.22592 0.94922 0.96554 0.95004 1.21704 1.02448 0.99994 0.95323 1.21375 0.99051 0.94072 1.02843 0.94081 0.94113 0.89808 0.88343 0.90709 0.76981 0.75654 0.89989 0.89974 0.77003 0.91632 0.92154 0.92699 0.91682 0.92283 0.91748 0.91886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 10.85 101.05 1.10 1.29 16 2 O -0.37 -3.44 9.84 -35.23 -0.35 -3.78 16 3 C 0.07 0.60 3.62 -25.83 -0.09 0.51 16 4 H 0.09 0.68 7.72 -51.93 -0.40 0.28 16 5 C -0.17 -1.65 7.37 -25.83 -0.19 -1.84 16 6 C 0.15 1.64 3.77 -67.12 -0.25 1.39 16 7 H 0.11 1.39 7.42 -51.93 -0.39 1.00 16 8 N -0.73 -8.67 4.78 -57.88 -0.28 -8.94 16 9 C 0.71 11.34 8.57 -86.92 -0.74 10.60 16 10 O -0.59 -11.55 15.94 5.29 0.08 -11.47 16 11 N -0.72 -12.04 5.53 -66.41 -0.37 -12.41 16 12 C 0.13 2.38 6.15 -5.19 -0.03 2.35 16 13 C 0.43 9.79 7.85 -10.98 -0.09 9.71 16 14 O -0.60 -15.19 15.24 5.54 0.08 -15.10 16 15 N -0.55 -13.60 5.29 -10.96 -0.06 -13.65 16 16 C -0.30 -8.24 9.68 -14.93 -0.14 -8.39 16 17 H 0.11 2.98 7.16 -52.49 -0.38 2.60 16 18 C 0.03 0.65 5.50 -17.47 -0.10 0.56 16 19 N -0.89 -23.86 13.05 55.50 0.72 -23.14 16 20 Si 0.93 20.48 29.55 -169.99 -5.02 15.45 16 21 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 22 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 23 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 24 C -0.09 -0.78 1.33 -153.69 -0.20 -0.99 16 25 C -0.14 -1.11 8.61 37.16 0.32 -0.79 16 26 C -0.12 -0.95 8.43 37.16 0.31 -0.64 16 27 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 28 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.10 0.93 7.64 -51.93 -0.40 0.53 16 31 H 0.07 0.78 8.14 -51.92 -0.42 0.36 16 32 H 0.40 3.85 7.15 -40.82 -0.29 3.56 16 33 H 0.41 6.53 7.45 -40.82 -0.30 6.23 16 34 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 35 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 36 H 0.40 9.44 7.90 -40.82 -0.32 9.12 16 37 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 38 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.05 0.41 6.59 -51.93 -0.34 0.07 16 40 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 41 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.06 0.54 7.22 -51.93 -0.38 0.17 16 43 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 LS Contribution 358.25 15.07 5.40 5.40 Total: -1.00 -31.69 358.25 -6.45 -38.14 By element: Atomic # 1 Polarization: 22.31 SS G_CDS: -6.56 Total: 15.75 kcal Atomic # 6 Polarization: 13.87 SS G_CDS: -0.12 Total: 13.75 kcal Atomic # 7 Polarization: -58.17 SS G_CDS: 0.02 Total: -58.14 kcal Atomic # 8 Polarization: -30.18 SS G_CDS: -0.18 Total: -30.35 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.69 -6.45 -38.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345083459.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.669 kcal (2) G-P(sol) polarization free energy of solvation -31.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds