Wall clock time and date at job start Tue Mar 31 2020 05:07:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42897 * 114.00519 * 2 1 4 4 H 1.09000 * 112.90608 * 341.25520 * 3 2 1 5 5 C 1.53948 * 113.66754 * 112.55109 * 3 2 1 6 6 C 1.53780 * 87.11633 * 139.89497 * 5 3 2 7 7 H 1.08994 * 113.61871 * 220.09800 * 6 5 3 8 8 N 1.46496 * 113.69174 * 89.19450 * 6 5 3 9 9 C 1.34779 * 119.99821 * 107.47265 * 8 6 5 10 10 O 1.21589 * 119.99986 * 359.97438 * 9 8 6 11 11 N 1.34777 * 119.99879 * 180.02562 * 9 8 6 12 12 C 1.46503 * 119.99717 * 180.02562 * 11 9 8 13 13 C 1.50702 * 109.46990 * 179.97438 * 12 11 9 14 14 O 1.21296 * 119.99785 * 359.97438 * 13 12 11 15 15 N 1.34777 * 119.99717 * 179.97438 * 13 12 11 16 16 C 1.37096 * 119.99664 * 179.97438 * 15 13 12 17 17 H 1.08002 * 120.00227 * 0.02562 * 16 15 13 18 18 C 1.38952 * 120.00130 * 180.02562 * 16 15 13 19 19 N 1.31408 * 119.99787 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00093 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47216 * 359.97438 * 20 18 16 22 22 H 1.48493 * 109.47339 * 120.00241 * 20 18 16 23 23 H 1.48500 * 109.46814 * 239.99953 * 20 18 16 24 24 C 1.53780 * 113.61931 * 210.00031 * 3 2 1 25 25 C 1.53006 * 113.61448 * 105.46704 * 24 3 2 26 26 C 1.52999 * 113.61453 * 334.65368 * 24 3 2 27 27 H 1.09002 * 109.46759 * 300.00168 * 1 2 3 28 28 H 1.08999 * 109.47399 * 59.99357 * 1 2 3 29 29 H 1.08995 * 109.47372 * 180.02562 * 1 2 3 30 30 H 1.09005 * 113.54029 * 25.34125 * 5 3 2 31 31 H 1.09010 * 113.74678 * 254.47505 * 5 3 2 32 32 H 0.96998 * 120.00283 * 287.46878 * 8 6 5 33 33 H 0.96998 * 120.00226 * 359.97438 * 11 9 8 34 34 H 1.09001 * 109.46589 * 299.99507 * 12 11 9 35 35 H 1.08998 * 109.47539 * 59.99411 * 12 11 9 36 36 H 0.96989 * 120.00105 * 0.02562 * 15 13 12 37 37 H 0.96999 * 119.99885 * 180.02562 * 19 18 16 38 38 H 1.08995 * 109.47299 * 279.14367 * 25 24 3 39 39 H 1.09004 * 109.46791 * 39.13858 * 25 24 3 40 40 H 1.08991 * 109.46960 * 159.13712 * 25 24 3 41 41 H 1.08993 * 109.47603 * 200.86038 * 26 24 3 42 42 H 1.09000 * 109.46814 * 320.86477 * 26 24 3 43 43 H 1.09002 * 109.47143 * 80.85926 * 26 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3143 2.0797 -0.3227 5 6 2.7557 1.6499 1.3022 6 6 3.8254 2.3173 0.4218 7 1 4.8452 2.1373 0.7617 8 7 3.5600 3.7307 0.1425 9 6 4.3029 4.6860 0.7358 10 8 5.1931 4.3746 1.5033 11 7 4.0584 5.9863 0.4793 12 6 4.8663 7.0246 1.1238 13 6 4.3937 8.3821 0.6712 14 8 3.4729 8.4733 -0.1131 15 7 4.9943 9.4948 1.1378 16 6 4.5647 10.7297 0.7256 17 1 3.7448 10.8110 0.0273 18 6 5.1841 11.8770 1.2062 19 7 6.1820 11.7781 2.0555 20 14 4.5983 13.5596 0.6451 21 1 3.4692 13.3989 -0.3061 22 1 4.1468 14.3444 1.8221 23 1 5.7136 14.2732 -0.0273 24 6 3.3756 1.3718 -0.7045 25 6 3.3235 2.0388 -2.0805 26 6 4.1232 0.0370 -0.7193 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 3.1178 0.7744 1.8412 31 1 2.2191 2.3496 1.9432 32 1 2.8496 3.9791 -0.4695 33 1 3.3479 6.2347 -0.1327 34 1 4.7630 6.9457 2.2061 35 1 5.9128 6.8940 0.8483 36 1 5.7308 9.4218 1.7646 37 1 6.6142 12.5790 2.3913 38 1 2.9723 1.3193 -2.8201 39 1 2.6407 2.8879 -2.0470 40 1 4.3201 2.3846 -2.3546 41 1 5.1858 0.2174 -0.8811 42 1 3.9818 -0.4692 0.2356 43 1 3.7344 -0.5883 -1.5231 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345083459.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:05 Heat of formation + Delta-G solvation = -117.647803 kcal Electronic energy + Delta-G solvation = -24261.330832 eV Core-core repulsion = 20534.453928 eV Total energy + Delta-G solvation = -3726.876904 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.168 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.88932 -40.68162 -39.80072 -37.51939 -36.22958 -35.26927 -34.28107 -33.35124 -31.46531 -29.26820 -28.26861 -27.70321 -26.44260 -24.87341 -23.55463 -22.01357 -21.37060 -20.13675 -20.00569 -19.34062 -17.73292 -17.35149 -17.20729 -16.85256 -16.51067 -16.34082 -16.21286 -15.96984 -15.64239 -15.50154 -15.15404 -14.51585 -14.18480 -14.08483 -13.93930 -13.76206 -13.55074 -13.50069 -13.13509 -12.97981 -12.91417 -12.57439 -12.44073 -12.31363 -12.10937 -11.87441 -11.69089 -11.57460 -11.43917 -11.18804 -10.55046 -10.38536 -10.30425 -10.09641 -9.81397 -8.50705 -6.00781 1.35508 1.42695 1.52424 1.59433 1.90067 2.08615 2.28731 2.86992 3.02843 3.16673 3.27500 3.34014 3.50691 3.82345 3.88652 4.20964 4.24699 4.34770 4.43691 4.47075 4.51743 4.56879 4.60228 4.72016 4.82309 4.86870 4.89749 4.93481 4.99613 5.09207 5.13096 5.30599 5.37279 5.39451 5.42282 5.57848 5.91576 5.95134 6.31250 6.48525 7.00762 7.04083 7.43198 7.52545 7.94955 8.66496 Molecular weight = 299.17amu Principal moments of inertia in cm(-1) A = 0.033673 B = 0.002433 C = 0.002379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.319830 B =11507.439620 C =11767.264641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.386 6.386 3 C 0.075 3.925 4 H 0.097 0.903 5 C -0.167 4.167 6 C 0.143 3.857 7 H 0.092 0.908 8 N -0.713 5.713 9 C 0.708 3.292 10 O -0.629 6.629 11 N -0.723 5.723 12 C 0.142 3.858 13 C 0.435 3.565 14 O -0.624 6.624 15 N -0.560 5.560 16 C -0.335 4.335 17 H 0.087 0.913 18 C -0.012 4.012 19 N -0.917 5.917 20 Si 0.997 3.003 21 H -0.269 1.269 22 H -0.271 1.271 23 H -0.272 1.272 24 C -0.081 4.081 25 C -0.137 4.137 26 C -0.115 4.115 27 H 0.043 0.957 28 H 0.050 0.950 29 H 0.096 0.904 30 H 0.100 0.900 31 H 0.067 0.933 32 H 0.408 0.592 33 H 0.410 0.590 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.399 0.601 37 H 0.280 0.720 38 H 0.070 0.930 39 H 0.061 0.939 40 H 0.057 0.943 41 H 0.059 0.941 42 H 0.060 0.940 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.996 -22.004 -4.991 23.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.304 6.304 3 C 0.017 3.983 4 H 0.115 0.885 5 C -0.206 4.206 6 C 0.036 3.964 7 H 0.110 0.890 8 N -0.368 5.368 9 C 0.408 3.592 10 O -0.511 6.511 11 N -0.380 5.380 12 C 0.013 3.987 13 C 0.222 3.778 14 O -0.512 6.512 15 N -0.196 5.196 16 C -0.464 4.464 17 H 0.105 0.895 18 C -0.212 4.212 19 N -0.557 5.557 20 Si 0.820 3.180 21 H -0.194 1.194 22 H -0.197 1.197 23 H -0.197 1.197 24 C -0.082 4.082 25 C -0.194 4.194 26 C -0.172 4.172 27 H 0.061 0.939 28 H 0.068 0.932 29 H 0.114 0.886 30 H 0.118 0.882 31 H 0.086 0.914 32 H 0.246 0.754 33 H 0.248 0.752 34 H 0.109 0.891 35 H 0.110 0.890 36 H 0.233 0.767 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.080 0.920 40 H 0.076 0.924 41 H 0.078 0.922 42 H 0.079 0.921 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -7.563 -22.211 -4.716 23.933 hybrid contribution -0.511 1.430 -0.134 1.525 sum -8.074 -20.781 -4.850 22.815 Atomic orbital electron populations 1.22950 0.80167 1.03695 1.00515 1.87907 1.20737 1.27266 1.94537 1.23942 0.93434 0.85477 0.95413 0.88542 1.23980 0.97963 1.00941 0.97714 1.21626 0.99545 0.78294 0.96888 0.89015 1.44600 1.38011 1.04448 1.49723 1.15895 0.81860 0.80771 0.80704 1.90886 1.36198 1.82184 1.41783 1.44666 1.39394 1.03344 1.50640 1.20587 0.95731 0.83989 0.98378 1.20408 0.85703 0.86469 0.85258 1.90467 1.33315 1.87324 1.40052 1.41844 1.31949 1.04880 1.40884 1.19766 1.17334 0.82959 1.26390 0.89546 1.26136 0.95733 1.03379 0.95987 1.69687 1.22908 1.31955 1.31118 0.84809 0.78284 0.76625 0.78246 1.19385 1.19673 1.19681 1.22537 0.94841 0.96099 0.94720 1.21712 1.02284 1.00478 0.94963 1.21372 0.99140 0.93784 1.02902 0.93862 0.93160 0.88567 0.88166 0.91434 0.75449 0.75208 0.89062 0.89024 0.76698 0.91089 0.91097 0.91993 0.92395 0.92154 0.92119 0.91197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 10.85 113.37 1.23 1.49 16 2 O -0.39 -6.39 9.84 -148.98 -1.47 -7.86 16 3 C 0.08 1.19 3.62 31.18 0.11 1.30 16 4 H 0.10 1.30 7.72 -2.39 -0.02 1.29 16 5 C -0.17 -3.11 7.37 31.18 0.23 -2.88 16 6 C 0.14 2.97 3.77 45.52 0.17 3.14 16 7 H 0.09 2.30 7.42 -2.39 -0.02 2.29 16 8 N -0.71 -16.13 4.78 -455.30 -2.18 -18.31 16 9 C 0.71 22.20 8.57 179.05 1.53 23.73 16 10 O -0.63 -24.26 15.94 -4.00 -0.06 -24.32 16 11 N -0.72 -23.46 5.53 -482.28 -2.67 -26.13 16 12 C 0.14 5.18 6.15 85.63 0.53 5.71 16 13 C 0.43 19.87 7.85 87.66 0.69 20.56 16 14 O -0.62 -31.73 15.24 -3.08 -0.05 -31.78 16 15 N -0.56 -27.99 5.29 -306.97 -1.62 -29.61 16 16 C -0.34 -18.36 9.68 84.04 0.81 -17.55 16 17 H 0.09 4.98 7.16 -2.91 -0.02 4.96 16 18 C -0.01 -0.61 5.50 84.93 0.47 -0.15 16 19 N -0.92 -48.62 13.05 21.66 0.28 -48.34 16 20 Si 1.00 41.56 29.55 68.60 2.03 43.59 16 21 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 22 H -0.27 -10.88 7.11 99.48 0.71 -10.18 16 23 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 24 C -0.08 -1.30 1.33 -51.65 -0.07 -1.36 16 25 C -0.14 -1.95 8.61 71.98 0.62 -1.33 16 26 C -0.11 -1.73 8.43 71.98 0.61 -1.13 16 27 H 0.04 0.47 8.14 -2.39 -0.02 0.45 16 28 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 29 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.10 1.83 7.64 -2.38 -0.02 1.81 16 31 H 0.07 1.36 8.14 -2.38 -0.02 1.34 16 32 H 0.41 7.25 7.15 -92.71 -0.66 6.59 16 33 H 0.41 12.81 7.45 -92.71 -0.69 12.12 16 34 H 0.09 3.21 8.14 -2.39 -0.02 3.19 16 35 H 0.09 3.22 8.14 -2.39 -0.02 3.20 16 36 H 0.40 19.20 7.90 -92.72 -0.73 18.47 16 37 H 0.28 13.84 8.31 -92.71 -0.77 13.07 16 38 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.06 0.78 6.59 -2.38 -0.02 0.77 16 40 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 41 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 42 H 0.06 0.96 7.22 -2.39 -0.02 0.94 16 43 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 Total: -1.00 -66.88 358.25 0.16 -66.72 By element: Atomic # 1 Polarization: 45.54 SS G_CDS: -1.04 Total: 44.50 kcal Atomic # 6 Polarization: 24.60 SS G_CDS: 6.93 Total: 31.53 kcal Atomic # 7 Polarization: -116.20 SS G_CDS: -6.19 Total: -122.39 kcal Atomic # 8 Polarization: -62.38 SS G_CDS: -1.58 Total: -63.96 kcal Atomic # 14 Polarization: 41.56 SS G_CDS: 2.03 Total: 43.59 kcal Total: -66.88 0.16 -66.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345083459.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.924 kcal (2) G-P(sol) polarization free energy of solvation -66.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds