Wall clock time and date at job start Tue Mar 31 2020 05:24:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47060 * 2 1 4 4 H 1.09002 * 109.47069 * 304.99600 * 3 2 1 5 5 N 1.46498 * 109.47465 * 65.00143 * 3 2 1 6 6 C 1.34775 * 119.99767 * 274.99987 * 5 3 2 7 7 O 1.21592 * 120.00054 * 359.97438 * 6 5 3 8 8 N 1.34780 * 120.00039 * 180.02562 * 6 5 3 9 9 C 1.46500 * 119.99752 * 179.97438 * 8 6 5 10 10 C 1.50701 * 109.46942 * 179.97438 * 9 8 6 11 11 O 1.21296 * 119.99833 * 0.02562 * 10 9 8 12 12 N 1.34770 * 120.00300 * 179.97438 * 10 9 8 13 13 C 1.37103 * 120.00316 * 179.97438 * 12 10 9 14 14 H 1.07999 * 119.99475 * 0.02562 * 13 12 10 15 15 C 1.38948 * 120.00103 * 180.02562 * 13 12 10 16 16 N 1.31413 * 120.00033 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99964 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47316 * 90.00159 * 17 15 13 19 19 H 1.48505 * 109.47198 * 210.00347 * 17 15 13 20 20 H 1.48504 * 109.46913 * 329.99993 * 17 15 13 21 21 C 1.53006 * 109.46846 * 185.00166 * 3 2 1 22 22 H 1.09003 * 109.82198 * 300.56156 * 21 3 2 23 23 C 1.54384 * 109.82962 * 179.58556 * 21 3 2 24 24 C 1.55303 * 102.25241 * 219.12599 * 23 21 3 25 25 C 1.54955 * 100.94058 * 34.13495 * 24 23 21 26 26 O 1.43231 * 109.83167 * 61.45244 * 21 3 2 27 27 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47153 * 300.00319 * 1 2 3 29 29 H 1.08998 * 109.47533 * 59.99948 * 1 2 3 30 30 H 1.09002 * 109.47153 * 239.99681 * 2 1 3 31 31 H 1.09001 * 109.46832 * 119.99872 * 2 1 3 32 32 H 0.96997 * 120.00030 * 94.99833 * 5 3 2 33 33 H 0.96997 * 119.99758 * 359.97438 * 8 6 5 34 34 H 1.09000 * 109.47191 * 299.99600 * 9 8 6 35 35 H 1.08997 * 109.47211 * 59.99766 * 9 8 6 36 36 H 0.97002 * 119.99904 * 0.02562 * 12 10 9 37 37 H 0.97003 * 119.99933 * 179.97438 * 16 15 13 38 38 H 1.09004 * 110.84620 * 337.31933 * 23 21 3 39 39 H 1.09000 * 110.84432 * 100.93910 * 23 21 3 40 40 H 1.08991 * 111.12694 * 276.21353 * 24 23 21 41 41 H 1.09003 * 111.15969 * 152.06536 * 24 23 21 42 42 H 1.08996 * 110.30656 * 204.63984 * 25 24 23 43 43 H 1.09000 * 110.30599 * 82.46707 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 7 1.6525 2.0975 1.2518 6 6 0.4352 2.6644 1.3669 7 8 -0.3412 2.6326 0.4317 8 7 0.0788 3.2676 2.5183 9 6 -1.2442 3.8843 2.6432 10 6 -1.3911 4.4840 4.0179 11 8 -0.4800 4.4045 4.8148 12 7 -2.5343 5.1095 4.3616 13 6 -2.6681 5.6547 5.6125 14 1 -1.8572 5.5832 6.3222 15 6 -3.8469 6.2991 5.9670 16 7 -4.8338 6.3857 5.1035 17 14 -4.0290 7.0425 7.6710 18 1 -3.5574 8.4505 7.6498 19 1 -5.4568 7.0047 8.0776 20 1 -3.2175 6.2632 8.6403 21 6 3.5648 1.4443 -0.1258 22 1 4.0052 0.8979 0.7083 23 6 4.0877 2.8968 -0.1371 24 6 5.2241 2.8298 -1.1935 25 6 4.6436 1.7895 -2.1843 26 8 3.9510 0.8356 -1.3635 27 1 -0.3635 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 2.2720 2.1232 1.9977 33 1 0.6983 3.2932 3.2643 34 1 -1.3529 4.6663 1.8918 35 1 -2.0137 3.1270 2.4934 36 1 -3.2627 5.1734 3.7243 37 1 -5.6569 6.8353 5.3511 38 1 3.3058 3.5881 -0.4517 39 1 4.4825 3.1746 0.8402 40 1 6.1532 2.4732 -0.7490 41 1 5.3686 3.7956 -1.6778 42 1 5.4479 1.3016 -2.7348 43 1 3.9494 2.2700 -2.8737 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345435704.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:20 Heat of formation + Delta-G solvation = -122.636571 kcal Electronic energy + Delta-G solvation = -24492.783632 eV Core-core repulsion = 20765.690399 eV Total energy + Delta-G solvation = -3727.093233 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.168 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.48250 -39.44029 -38.22008 -35.81661 -34.36632 -33.66530 -32.58846 -31.88127 -31.34391 -30.00394 -27.50174 -25.67986 -24.36394 -22.60206 -21.55471 -21.00833 -20.57513 -19.58464 -18.43546 -17.94092 -17.35067 -16.36575 -15.93830 -15.70579 -15.55443 -14.94160 -14.67856 -14.46948 -14.30887 -13.93707 -13.81205 -13.51294 -13.43382 -13.20117 -12.68364 -12.27293 -12.17231 -12.09221 -11.87268 -11.63686 -11.62607 -11.35372 -11.19362 -11.12680 -10.89264 -10.73957 -10.46196 -10.31993 -9.94266 -9.84071 -9.63481 -9.02131 -8.62210 -8.59507 -8.09850 -6.51340 -3.93395 2.70951 3.11524 3.21917 3.27197 3.41241 3.60388 3.75719 4.09419 4.14682 4.28193 4.46996 4.54600 4.77524 4.86449 4.90945 4.98704 5.17445 5.19845 5.22058 5.34767 5.41934 5.44063 5.53741 5.61638 5.73495 5.84776 5.94005 5.97789 6.01793 6.08171 6.09104 6.24017 6.52655 6.56521 6.73111 6.79061 7.11073 7.46005 7.92639 8.25711 8.45430 8.82883 9.04828 9.39859 9.87720 10.65593 Molecular weight = 299.17amu Principal moments of inertia in cm(-1) A = 0.030226 B = 0.002607 C = 0.002493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.132432 B =10738.655046 C =11226.614925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.129 4.129 3 C 0.156 3.844 4 H 0.091 0.909 5 N -0.741 5.741 6 C 0.707 3.293 7 O -0.590 6.590 8 N -0.725 5.725 9 C 0.129 3.871 10 C 0.429 3.571 11 O -0.598 6.598 12 N -0.550 5.550 13 C -0.305 4.305 14 H 0.105 0.895 15 C 0.025 3.975 16 N -0.895 5.895 17 Si 0.933 3.067 18 H -0.277 1.277 19 H -0.282 1.282 20 H -0.269 1.269 21 C 0.076 3.924 22 H 0.084 0.916 23 C -0.151 4.151 24 C -0.157 4.157 25 C 0.049 3.951 26 O -0.370 6.370 27 H 0.041 0.959 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.074 0.926 31 H 0.058 0.942 32 H 0.394 0.606 33 H 0.406 0.594 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.396 0.604 37 H 0.274 0.726 38 H 0.082 0.918 39 H 0.084 0.916 40 H 0.078 0.922 41 H 0.083 0.917 42 H 0.086 0.914 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.502 -8.650 -12.273 22.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.168 4.168 3 C 0.051 3.949 4 H 0.109 0.891 5 N -0.399 5.399 6 C 0.406 3.594 7 O -0.469 6.469 8 N -0.383 5.383 9 C 0.001 3.999 10 C 0.214 3.786 11 O -0.485 6.485 12 N -0.184 5.184 13 C -0.434 4.434 14 H 0.123 0.877 15 C -0.177 4.177 16 N -0.535 5.535 17 Si 0.760 3.240 18 H -0.203 1.203 19 H -0.208 1.208 20 H -0.193 1.193 21 C 0.017 3.983 22 H 0.102 0.898 23 C -0.188 4.188 24 C -0.195 4.195 25 C -0.028 4.028 26 O -0.288 6.288 27 H 0.060 0.940 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.093 0.907 31 H 0.077 0.923 32 H 0.228 0.772 33 H 0.243 0.757 34 H 0.099 0.901 35 H 0.099 0.901 36 H 0.230 0.770 37 H 0.084 0.916 38 H 0.101 0.899 39 H 0.102 0.898 40 H 0.096 0.904 41 H 0.102 0.898 42 H 0.104 0.896 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 16.113 -8.833 -12.642 22.304 hybrid contribution -0.052 0.737 1.220 1.426 sum 16.061 -8.096 -11.422 21.306 Atomic orbital electron populations 1.21777 0.94703 1.00148 1.03358 1.21901 0.97110 0.95682 1.02127 1.21105 0.92930 0.93851 0.87058 0.89057 1.44953 1.16279 1.61827 1.16794 1.15762 0.81990 0.78356 0.83251 1.90921 1.51726 1.65217 1.39000 1.44784 1.18348 1.59953 1.15192 1.20765 0.84245 0.97980 0.96903 1.19779 0.84727 0.85175 0.88880 1.90489 1.40840 1.64432 1.52756 1.41792 1.13801 1.47903 1.14939 1.19721 1.01353 1.31920 0.90421 0.87712 1.25324 0.95087 0.97432 0.99898 1.69617 1.05493 1.42916 1.35467 0.85816 0.77504 0.79288 0.81436 1.20279 1.20796 1.19332 1.22915 0.93782 0.93557 0.88044 0.89771 1.23182 0.98441 0.96634 1.00557 1.23274 0.98861 1.00340 0.96989 1.23423 0.95661 0.90147 0.93561 1.88432 1.75945 1.35969 1.28477 0.94023 0.92174 0.92280 0.90715 0.92281 0.77220 0.75702 0.90077 0.90070 0.77018 0.91591 0.89926 0.89750 0.90357 0.89838 0.89614 0.92026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.90 8.51 37.16 0.32 -1.58 16 2 C -0.13 -1.45 5.54 -26.73 -0.15 -1.60 16 3 C 0.16 1.71 1.89 -67.93 -0.13 1.59 16 4 H 0.09 1.20 7.58 -51.93 -0.39 0.81 16 5 N -0.74 -8.52 4.65 -58.67 -0.27 -8.80 16 6 C 0.71 10.94 7.13 -86.92 -0.62 10.32 16 7 O -0.59 -10.86 13.48 5.28 0.07 -10.79 16 8 N -0.73 -11.85 5.53 -66.41 -0.37 -12.22 16 9 C 0.13 2.38 6.15 -5.19 -0.03 2.35 16 10 C 0.43 9.76 7.85 -10.99 -0.09 9.68 16 11 O -0.60 -15.16 15.24 5.54 0.08 -15.08 16 12 N -0.55 -13.59 5.29 -10.96 -0.06 -13.65 16 13 C -0.30 -8.26 9.68 -14.93 -0.14 -8.40 16 14 H 0.11 2.95 7.16 -52.49 -0.38 2.58 16 15 C 0.03 0.66 5.50 -17.47 -0.10 0.57 16 16 N -0.89 -23.89 13.05 55.50 0.72 -23.17 16 17 Si 0.93 20.50 29.55 -169.99 -5.02 15.47 16 18 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 19 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 20 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 21 C 0.08 0.67 3.14 -26.00 -0.08 0.58 16 22 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 23 C -0.15 -1.16 6.18 -24.78 -0.15 -1.31 16 24 C -0.16 -1.00 7.16 -24.48 -0.18 -1.18 16 25 C 0.05 0.36 7.78 38.19 0.30 0.65 16 26 O -0.37 -3.64 10.34 -35.23 -0.36 -4.00 16 27 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.06 0.93 5.65 -51.93 -0.29 0.64 16 29 H 0.06 0.85 7.84 -51.93 -0.41 0.45 16 30 H 0.07 0.81 7.60 -51.93 -0.39 0.42 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.39 3.62 8.62 -40.82 -0.35 3.27 16 33 H 0.41 6.46 7.45 -40.82 -0.30 6.16 16 34 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 35 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 36 H 0.40 9.44 7.90 -40.82 -0.32 9.12 16 37 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 38 H 0.08 0.75 7.85 -51.93 -0.41 0.34 16 39 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 41 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 42 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 43 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 LS Contribution 352.34 15.07 5.31 5.31 Total: -1.00 -31.25 352.34 -7.56 -38.81 By element: Atomic # 1 Polarization: 23.04 SS G_CDS: -6.61 Total: 16.43 kcal Atomic # 6 Polarization: 12.72 SS G_CDS: -1.05 Total: 11.67 kcal Atomic # 7 Polarization: -57.85 SS G_CDS: 0.03 Total: -57.83 kcal Atomic # 8 Polarization: -29.65 SS G_CDS: -0.21 Total: -29.86 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.25 -7.56 -38.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345435704.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.822 kcal (2) G-P(sol) polarization free energy of solvation -31.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds