Wall clock time and date at job start Tue Mar 31 2020 05:24:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47060 * 2 1 4 4 H 1.09002 * 109.47069 * 304.99600 * 3 2 1 5 5 N 1.46498 * 109.47465 * 65.00143 * 3 2 1 6 6 C 1.34775 * 119.99767 * 274.99987 * 5 3 2 7 7 O 1.21592 * 120.00054 * 359.97438 * 6 5 3 8 8 N 1.34780 * 120.00039 * 180.02562 * 6 5 3 9 9 C 1.46500 * 119.99752 * 179.97438 * 8 6 5 10 10 C 1.50701 * 109.46942 * 179.97438 * 9 8 6 11 11 O 1.21296 * 119.99833 * 0.02562 * 10 9 8 12 12 N 1.34770 * 120.00300 * 179.97438 * 10 9 8 13 13 C 1.37103 * 120.00316 * 179.97438 * 12 10 9 14 14 H 1.07999 * 119.99475 * 0.02562 * 13 12 10 15 15 C 1.38948 * 120.00103 * 180.02562 * 13 12 10 16 16 N 1.31413 * 120.00033 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99964 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47316 * 90.00159 * 17 15 13 19 19 H 1.48505 * 109.47198 * 210.00347 * 17 15 13 20 20 H 1.48504 * 109.46913 * 329.99993 * 17 15 13 21 21 C 1.53006 * 109.46846 * 185.00166 * 3 2 1 22 22 H 1.09003 * 109.82198 * 300.56156 * 21 3 2 23 23 C 1.54384 * 109.82962 * 179.58556 * 21 3 2 24 24 C 1.55303 * 102.25241 * 219.12599 * 23 21 3 25 25 C 1.54955 * 100.94058 * 34.13495 * 24 23 21 26 26 O 1.43231 * 109.83167 * 61.45244 * 21 3 2 27 27 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47153 * 300.00319 * 1 2 3 29 29 H 1.08998 * 109.47533 * 59.99948 * 1 2 3 30 30 H 1.09002 * 109.47153 * 239.99681 * 2 1 3 31 31 H 1.09001 * 109.46832 * 119.99872 * 2 1 3 32 32 H 0.96997 * 120.00030 * 94.99833 * 5 3 2 33 33 H 0.96997 * 119.99758 * 359.97438 * 8 6 5 34 34 H 1.09000 * 109.47191 * 299.99600 * 9 8 6 35 35 H 1.08997 * 109.47211 * 59.99766 * 9 8 6 36 36 H 0.97002 * 119.99904 * 0.02562 * 12 10 9 37 37 H 0.97003 * 119.99933 * 179.97438 * 16 15 13 38 38 H 1.09004 * 110.84620 * 337.31933 * 23 21 3 39 39 H 1.09000 * 110.84432 * 100.93910 * 23 21 3 40 40 H 1.08991 * 111.12694 * 276.21353 * 24 23 21 41 41 H 1.09003 * 111.15969 * 152.06536 * 24 23 21 42 42 H 1.08996 * 110.30656 * 204.63984 * 25 24 23 43 43 H 1.09000 * 110.30599 * 82.46707 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 7 1.6525 2.0975 1.2518 6 6 0.4352 2.6644 1.3669 7 8 -0.3412 2.6326 0.4317 8 7 0.0788 3.2676 2.5183 9 6 -1.2442 3.8843 2.6432 10 6 -1.3911 4.4840 4.0179 11 8 -0.4800 4.4045 4.8148 12 7 -2.5343 5.1095 4.3616 13 6 -2.6681 5.6547 5.6125 14 1 -1.8572 5.5832 6.3222 15 6 -3.8469 6.2991 5.9670 16 7 -4.8338 6.3857 5.1035 17 14 -4.0290 7.0425 7.6710 18 1 -3.5574 8.4505 7.6498 19 1 -5.4568 7.0047 8.0776 20 1 -3.2175 6.2632 8.6403 21 6 3.5648 1.4443 -0.1258 22 1 4.0052 0.8979 0.7083 23 6 4.0877 2.8968 -0.1371 24 6 5.2241 2.8298 -1.1935 25 6 4.6436 1.7895 -2.1843 26 8 3.9510 0.8356 -1.3635 27 1 -0.3635 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 2.2720 2.1232 1.9977 33 1 0.6983 3.2932 3.2643 34 1 -1.3529 4.6663 1.8918 35 1 -2.0137 3.1270 2.4934 36 1 -3.2627 5.1734 3.7243 37 1 -5.6569 6.8353 5.3511 38 1 3.3058 3.5881 -0.4517 39 1 4.4825 3.1746 0.8402 40 1 6.1532 2.4732 -0.7490 41 1 5.3686 3.7956 -1.6778 42 1 5.4479 1.3016 -2.7348 43 1 3.9494 2.2700 -2.8737 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345435704.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:19 Heat of formation + Delta-G solvation = -146.495741 kcal Electronic energy + Delta-G solvation = -24493.818244 eV Core-core repulsion = 20765.690399 eV Total energy + Delta-G solvation = -3728.127845 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.53280 -40.50210 -39.88692 -36.89668 -36.15466 -35.22782 -33.46220 -33.29298 -32.76840 -30.81383 -29.01726 -26.79156 -26.04736 -23.34389 -22.23377 -22.10900 -21.60936 -21.32129 -20.11843 -19.53696 -18.18382 -17.42529 -17.15008 -17.00025 -16.79998 -16.47311 -16.06939 -15.91102 -15.53160 -15.36816 -14.97191 -14.66579 -14.38785 -14.12799 -13.92287 -13.58768 -13.53910 -13.50920 -13.08205 -12.89511 -12.70378 -12.45157 -12.41535 -12.12411 -12.11536 -11.84017 -11.77868 -11.61888 -11.56002 -11.26254 -10.57068 -10.52777 -10.24774 -10.08966 -9.78588 -8.50326 -6.00491 1.37000 1.42686 1.53054 1.59189 1.91294 2.18339 2.28802 2.83670 3.12280 3.17112 3.41600 3.48454 3.60513 3.95276 4.14035 4.14633 4.22761 4.24914 4.34123 4.44821 4.48505 4.49267 4.54895 4.77176 4.82297 4.89858 4.95075 5.02724 5.03279 5.09164 5.18700 5.25608 5.33175 5.39442 5.51607 5.57807 5.92677 5.99347 6.04398 6.49045 7.04363 7.07933 7.44515 7.60228 7.95575 8.66682 Molecular weight = 299.17amu Principal moments of inertia in cm(-1) A = 0.030226 B = 0.002607 C = 0.002493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.132432 B =10738.655046 C =11226.614925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.124 4.124 3 C 0.159 3.841 4 H 0.067 0.933 5 N -0.722 5.722 6 C 0.708 3.292 7 O -0.620 6.620 8 N -0.725 5.725 9 C 0.144 3.856 10 C 0.435 3.565 11 O -0.623 6.623 12 N -0.561 5.561 13 C -0.336 4.336 14 H 0.087 0.913 15 C -0.012 4.012 16 N -0.917 5.917 17 Si 0.997 3.003 18 H -0.270 1.270 19 H -0.272 1.272 20 H -0.270 1.270 21 C 0.081 3.919 22 H 0.101 0.899 23 C -0.151 4.151 24 C -0.150 4.150 25 C 0.041 3.959 26 O -0.387 6.387 27 H 0.052 0.948 28 H 0.037 0.963 29 H 0.040 0.960 30 H 0.080 0.920 31 H 0.072 0.928 32 H 0.409 0.591 33 H 0.409 0.591 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.398 0.602 37 H 0.280 0.720 38 H 0.065 0.935 39 H 0.098 0.902 40 H 0.090 0.910 41 H 0.093 0.907 42 H 0.102 0.898 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.940 -8.924 -12.069 23.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.163 4.163 3 C 0.053 3.947 4 H 0.085 0.915 5 N -0.380 5.380 6 C 0.408 3.592 7 O -0.501 6.501 8 N -0.383 5.383 9 C 0.015 3.985 10 C 0.222 3.778 11 O -0.511 6.511 12 N -0.196 5.196 13 C -0.465 4.465 14 H 0.105 0.895 15 C -0.212 4.212 16 N -0.557 5.557 17 Si 0.820 3.180 18 H -0.195 1.195 19 H -0.197 1.197 20 H -0.194 1.194 21 C 0.023 3.977 22 H 0.119 0.881 23 C -0.189 4.189 24 C -0.187 4.187 25 C -0.035 4.035 26 O -0.306 6.306 27 H 0.071 0.929 28 H 0.056 0.944 29 H 0.059 0.941 30 H 0.099 0.901 31 H 0.090 0.910 32 H 0.245 0.755 33 H 0.247 0.753 34 H 0.108 0.892 35 H 0.107 0.893 36 H 0.233 0.767 37 H 0.089 0.911 38 H 0.084 0.916 39 H 0.116 0.884 40 H 0.109 0.891 41 H 0.111 0.889 42 H 0.120 0.880 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 17.589 -9.124 -12.453 23.403 hybrid contribution -0.460 0.770 1.073 1.398 sum 17.130 -8.353 -11.380 22.197 Atomic orbital electron populations 1.21704 0.96338 1.00214 1.01270 1.21866 0.95466 0.95944 1.03021 1.21128 0.94694 0.93191 0.85684 0.91525 1.44771 1.15067 1.60545 1.17584 1.15822 0.82762 0.78251 0.82414 1.90909 1.52970 1.66317 1.39867 1.44681 1.17644 1.60246 1.15707 1.20541 0.85681 0.98286 0.93984 1.20429 0.83593 0.83762 0.90053 1.90466 1.41520 1.65018 1.54132 1.41846 1.14558 1.48629 1.14569 1.19733 1.01641 1.33819 0.91329 0.89536 1.26131 0.94362 0.97238 1.03477 1.69685 1.05861 1.43183 1.36998 0.84870 0.77768 0.78496 0.76872 1.19533 1.19727 1.19407 1.22893 0.91807 0.94585 0.88461 0.88097 1.23182 0.98511 0.95427 1.01771 1.23269 0.98668 1.00564 0.96229 1.23603 0.95942 0.90342 0.93642 1.88412 1.76258 1.36961 1.28987 0.92871 0.94431 0.94088 0.90104 0.90959 0.75485 0.75313 0.89165 0.89312 0.76742 0.91098 0.91638 0.88370 0.89118 0.88879 0.88002 0.92481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.64 8.51 71.98 0.61 -3.03 16 2 C -0.12 -2.64 5.54 30.59 0.17 -2.47 16 3 C 0.16 3.33 1.89 44.99 0.09 3.42 16 4 H 0.07 1.77 7.58 -2.39 -0.02 1.75 16 5 N -0.72 -15.83 4.65 -457.80 -2.13 -17.96 16 6 C 0.71 21.57 7.13 179.05 1.28 22.85 16 7 O -0.62 -22.92 13.48 -4.00 -0.05 -22.97 16 8 N -0.72 -23.26 5.53 -482.29 -2.67 -25.93 16 9 C 0.14 5.24 6.15 85.63 0.53 5.77 16 10 C 0.43 19.89 7.85 87.66 0.69 20.57 16 11 O -0.62 -31.74 15.24 -3.08 -0.05 -31.78 16 12 N -0.56 -28.08 5.29 -306.99 -1.62 -29.70 16 13 C -0.34 -18.44 9.68 84.04 0.81 -17.62 16 14 H 0.09 4.98 7.16 -2.91 -0.02 4.96 16 15 C -0.01 -0.60 5.50 84.93 0.47 -0.13 16 16 N -0.92 -48.81 13.05 21.66 0.28 -48.53 16 17 Si 1.00 41.63 29.55 68.60 2.03 43.66 16 18 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 19 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 20 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 21 C 0.08 1.28 3.14 31.07 0.10 1.37 16 22 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 23 C -0.15 -2.05 6.18 31.86 0.20 -1.85 16 24 C -0.15 -1.57 7.16 32.05 0.23 -1.34 16 25 C 0.04 0.53 7.78 72.65 0.57 1.10 16 26 O -0.39 -6.97 10.34 -148.98 -1.54 -8.51 16 27 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 28 H 0.04 1.15 5.65 -2.39 -0.01 1.14 16 29 H 0.04 1.20 7.84 -2.39 -0.02 1.19 16 30 H 0.08 1.65 7.60 -2.39 -0.02 1.64 16 31 H 0.07 1.36 8.14 -2.39 -0.02 1.35 16 32 H 0.41 6.74 8.62 -92.71 -0.80 5.94 16 33 H 0.41 12.71 7.45 -92.71 -0.69 12.01 16 34 H 0.09 3.17 8.14 -2.39 -0.02 3.15 16 35 H 0.09 3.14 8.14 -2.39 -0.02 3.12 16 36 H 0.40 19.27 7.90 -92.71 -0.73 18.53 16 37 H 0.28 13.92 8.31 -92.71 -0.77 13.15 16 38 H 0.06 1.12 7.85 -2.38 -0.02 1.10 16 39 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 41 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 42 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 43 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 Total: -1.00 -66.94 352.34 -1.20 -68.14 By element: Atomic # 1 Polarization: 46.12 SS G_CDS: -1.17 Total: 44.95 kcal Atomic # 6 Polarization: 22.91 SS G_CDS: 5.73 Total: 28.64 kcal Atomic # 7 Polarization: -115.97 SS G_CDS: -6.14 Total: -122.11 kcal Atomic # 8 Polarization: -61.63 SS G_CDS: -1.64 Total: -63.27 kcal Atomic # 14 Polarization: 41.63 SS G_CDS: 2.03 Total: 43.66 kcal Total: -66.94 -1.20 -68.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345435704.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.360 kcal (2) G-P(sol) polarization free energy of solvation -66.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds