Wall clock time and date at job start Tue Mar 31 2020 05:49:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.47485 * 2 1 4 4 C 1.53088 * 109.47937 * 120.02399 * 2 1 3 5 5 C 1.53179 * 109.16211 * 62.37804 * 4 2 1 6 6 H 1.08999 * 109.54445 * 297.02248 * 5 4 2 7 7 C 1.52999 * 109.54380 * 176.84107 * 5 4 2 8 8 N 1.46500 * 109.47528 * 175.00015 * 7 5 4 9 9 C 1.34773 * 120.00431 * 180.02562 * 8 7 5 10 10 O 1.21593 * 119.99894 * 359.97438 * 9 8 7 11 11 N 1.34777 * 120.00097 * 179.72742 * 9 8 7 12 12 C 1.46504 * 119.99854 * 180.27545 * 11 9 8 13 13 C 1.50701 * 109.46923 * 179.97438 * 12 11 9 14 14 O 1.21297 * 119.99993 * 0.02562 * 13 12 11 15 15 N 1.34776 * 119.99977 * 179.97438 * 13 12 11 16 16 C 1.37096 * 119.99931 * 180.02562 * 15 13 12 17 17 H 1.07998 * 120.00191 * 359.97438 * 16 15 13 18 18 C 1.38947 * 119.99788 * 180.02562 * 16 15 13 19 19 N 1.31415 * 120.00457 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99903 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.46973 * 89.99963 * 20 18 16 22 22 H 1.48505 * 109.47151 * 209.99607 * 20 18 16 23 23 H 1.48500 * 109.47089 * 330.00141 * 20 18 16 24 24 C 1.53178 * 109.03635 * 56.98031 * 5 4 2 25 25 C 1.53089 * 109.16271 * 303.01762 * 24 5 4 26 26 O 1.42904 * 109.48092 * 239.97236 * 2 1 3 27 27 H 1.08995 * 109.47249 * 299.97072 * 1 2 3 28 28 H 1.08999 * 109.47285 * 59.97647 * 1 2 3 29 29 H 1.09004 * 109.46685 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.52827 * 302.47073 * 4 2 1 31 31 H 1.09003 * 109.51973 * 182.28380 * 4 2 1 32 32 H 1.09009 * 109.47054 * 55.00310 * 7 5 4 33 33 H 1.08998 * 109.47782 * 295.00771 * 7 5 4 34 34 H 0.97000 * 119.99456 * 0.02562 * 8 7 5 35 35 H 0.97000 * 119.99736 * 0.26819 * 11 9 8 36 36 H 1.08998 * 109.46968 * 299.99782 * 12 11 9 37 37 H 1.08997 * 109.47198 * 59.99605 * 12 11 9 38 38 H 0.97003 * 119.99587 * 0.02562 * 15 13 12 39 39 H 0.96990 * 120.00229 * 180.02562 * 19 18 16 40 40 H 1.09001 * 109.52361 * 62.92421 * 24 5 4 41 41 H 1.09002 * 109.52530 * 183.11273 * 24 5 4 42 42 H 1.09005 * 109.48297 * 297.62938 * 25 24 5 43 43 H 1.08996 * 109.48478 * 177.59192 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0405 -0.7222 1.2496 5 6 1.5758 -2.1812 1.2122 6 1 0.4868 -2.2180 1.2424 7 6 2.1469 -2.9313 2.4172 8 7 1.6065 -4.2927 2.4460 9 6 1.9718 -5.1423 3.4265 10 8 2.7504 -4.7789 4.2869 11 7 1.4704 -6.3929 3.4560 12 6 1.8629 -7.3144 4.5252 13 6 1.1669 -8.6366 4.3295 14 8 0.4171 -8.7939 3.3891 15 7 1.3783 -9.6446 5.1987 16 6 0.7455 -10.8477 5.0204 17 1 0.0773 -10.9875 4.1835 18 6 0.9631 -11.8867 5.9168 19 7 1.7758 -11.7165 6.9354 20 14 0.1003 -13.5257 5.6742 21 1 0.9439 -14.4089 4.8295 22 1 -0.1218 -14.1684 6.9944 23 1 -1.2069 -13.3028 5.0059 24 6 2.0766 -2.8322 -0.0808 25 6 1.5647 -2.0285 -1.2790 26 8 2.0066 -0.6742 -1.1664 27 1 -0.3633 0.5133 0.8902 28 1 -0.3634 0.5142 -0.8898 29 1 -0.3633 -1.0277 -0.0005 30 1 1.6421 -0.2357 2.1399 31 1 3.1298 -0.6872 1.2710 32 1 1.8695 -2.4109 3.3340 33 1 3.2332 -2.9732 2.3378 34 1 0.9857 -4.5827 1.7594 35 1 0.8496 -6.6829 2.7694 36 1 2.9423 -7.4640 4.4979 37 1 1.5788 -6.8938 5.4898 38 1 1.9782 -9.5189 5.9506 39 1 1.9279 -12.4419 7.5610 40 1 3.1666 -2.8399 -0.0862 41 1 1.7039 -3.8547 -0.1420 42 1 0.4751 -2.0550 -1.2957 43 1 1.9532 -2.4622 -2.2004 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345737091.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:17 Heat of formation + Delta-G solvation = -129.218641 kcal Electronic energy + Delta-G solvation = -23897.525976 eV Core-core repulsion = 20170.147323 eV Total energy + Delta-G solvation = -3727.378653 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.168 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.43175 -39.63876 -38.20715 -35.96805 -34.40003 -33.65402 -33.23502 -32.36220 -31.37111 -29.11912 -27.77166 -26.06790 -24.36100 -23.87449 -22.25490 -20.73282 -19.66575 -19.56448 -18.42342 -17.97959 -16.69416 -16.51647 -16.16368 -15.72591 -15.52903 -15.11537 -14.92810 -14.67635 -14.46748 -14.15616 -13.96988 -13.70325 -13.49406 -13.45571 -12.92644 -12.50654 -12.41331 -12.18082 -12.14760 -11.87786 -11.63359 -11.60552 -11.29503 -11.12777 -10.97533 -10.46447 -10.44155 -10.32470 -10.04536 -9.81021 -9.63844 -9.16471 -8.62802 -8.59820 -8.10178 -6.51533 -3.93638 2.81255 3.11378 3.21808 3.27198 3.40546 3.50173 3.75109 4.08298 4.27506 4.28786 4.34223 4.46862 4.59918 4.72210 4.90349 4.92391 4.99944 5.01631 5.07576 5.17141 5.27722 5.30109 5.40624 5.50001 5.59906 5.61244 5.71883 5.74856 5.80514 5.92296 6.00712 6.01984 6.08314 6.49536 6.75435 6.87610 7.08481 7.45786 7.92259 8.23297 8.45084 8.79670 9.04471 9.39452 9.87306 10.65370 Molecular weight = 299.17amu Principal moments of inertia in cm(-1) A = 0.038588 B = 0.002186 C = 0.002119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.446488 B =12807.198085 C =13212.210798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.087 3.913 3 H 0.102 0.898 4 C -0.142 4.142 5 C -0.103 4.103 6 H 0.081 0.919 7 C 0.147 3.853 8 N -0.749 5.749 9 C 0.704 3.296 10 O -0.598 6.598 11 N -0.725 5.725 12 C 0.129 3.871 13 C 0.429 3.571 14 O -0.599 6.599 15 N -0.549 5.549 16 C -0.305 4.305 17 H 0.105 0.895 18 C 0.025 3.975 19 N -0.894 5.894 20 Si 0.933 3.067 21 H -0.277 1.277 22 H -0.282 1.282 23 H -0.269 1.269 24 C -0.152 4.152 25 C 0.057 3.943 26 O -0.378 6.378 27 H 0.067 0.933 28 H 0.062 0.938 29 H 0.064 0.936 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.395 0.605 35 H 0.406 0.594 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.396 0.604 39 H 0.274 0.726 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.054 0.946 43 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.660 21.174 -12.058 24.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C 0.029 3.971 3 H 0.120 0.880 4 C -0.180 4.180 5 C -0.121 4.121 6 H 0.099 0.901 7 C 0.022 3.978 8 N -0.406 5.406 9 C 0.403 3.597 10 O -0.477 6.477 11 N -0.382 5.382 12 C 0.000 4.000 13 C 0.214 3.786 14 O -0.485 6.485 15 N -0.184 5.184 16 C -0.434 4.434 17 H 0.123 0.877 18 C -0.178 4.178 19 N -0.535 5.535 20 Si 0.760 3.240 21 H -0.203 1.203 22 H -0.208 1.208 23 H -0.193 1.193 24 C -0.190 4.190 25 C -0.020 4.020 26 O -0.297 6.297 27 H 0.086 0.914 28 H 0.081 0.919 29 H 0.083 0.917 30 H 0.096 0.904 31 H 0.095 0.905 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.229 0.771 35 H 0.243 0.757 36 H 0.100 0.900 37 H 0.100 0.900 38 H 0.230 0.770 39 H 0.084 0.916 40 H 0.094 0.906 41 H 0.094 0.906 42 H 0.072 0.928 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -0.261 21.319 -11.828 24.382 hybrid contribution -0.759 -1.266 0.082 1.478 sum -1.020 20.053 -11.746 23.262 Atomic orbital electron populations 1.22476 0.96373 1.02913 1.02786 1.22160 0.93481 0.96399 0.85038 0.87976 1.22163 1.02322 0.94761 0.98748 1.21484 1.01059 0.95063 0.94542 0.90067 1.21161 0.98444 0.80739 0.97412 1.45043 1.51774 1.13371 1.30376 1.15858 0.81076 0.80644 0.82079 1.90908 1.39390 1.77262 1.40160 1.44773 1.50598 1.11203 1.31636 1.20780 0.99805 0.88839 0.90565 1.19770 0.87122 0.85775 0.85895 1.90488 1.41841 1.82844 1.33359 1.41792 1.40941 1.10961 1.24716 1.19721 1.24246 0.87882 1.11576 0.87700 1.25331 0.97033 1.00143 0.95260 1.69613 1.35656 1.34152 1.14043 0.85811 0.79631 0.80934 0.77627 1.20268 1.20799 1.19338 1.22272 1.02459 0.99748 0.94481 1.22596 0.98825 0.82205 0.98368 1.87998 1.73716 1.24821 1.43163 0.91360 0.91873 0.91741 0.90396 0.90514 0.91595 0.91582 0.77098 0.75658 0.90027 0.90040 0.77001 0.91584 0.90610 0.90630 0.92808 0.88856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.08 8.65 37.16 0.32 -0.76 16 2 C 0.09 0.58 3.91 -26.68 -0.10 0.48 16 3 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 4 C -0.14 -0.93 4.93 -26.59 -0.13 -1.06 16 5 C -0.10 -0.74 2.00 -90.44 -0.18 -0.92 16 6 H 0.08 0.55 6.62 -51.93 -0.34 0.21 16 7 C 0.15 1.47 5.07 -4.04 -0.02 1.45 16 8 N -0.75 -8.72 5.32 -65.22 -0.35 -9.07 16 9 C 0.70 11.43 8.57 -86.92 -0.74 10.68 16 10 O -0.60 -11.82 16.34 5.28 0.09 -11.73 16 11 N -0.72 -12.18 5.53 -66.41 -0.37 -12.55 16 12 C 0.13 2.41 6.15 -5.19 -0.03 2.38 16 13 C 0.43 9.85 7.85 -10.99 -0.09 9.76 16 14 O -0.60 -15.26 15.24 5.54 0.08 -15.17 16 15 N -0.55 -13.65 5.29 -10.96 -0.06 -13.71 16 16 C -0.30 -8.28 9.68 -14.93 -0.14 -8.43 16 17 H 0.11 2.96 7.16 -52.49 -0.38 2.59 16 18 C 0.03 0.66 5.50 -17.47 -0.10 0.56 16 19 N -0.89 -23.91 13.05 55.50 0.72 -23.18 16 20 Si 0.93 20.51 29.55 -169.99 -5.02 15.49 16 21 H -0.28 -6.02 7.11 56.52 0.40 -5.61 16 22 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 23 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 24 C -0.15 -1.10 5.26 -26.59 -0.14 -1.24 16 25 C 0.06 0.40 6.52 37.20 0.24 0.64 16 26 O -0.38 -3.30 10.60 -35.23 -0.37 -3.67 16 27 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.38 4.98 -51.93 -0.26 0.12 16 30 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.07 0.71 8.14 -51.92 -0.42 0.29 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.40 3.68 7.72 -40.82 -0.32 3.36 16 35 H 0.41 6.58 7.45 -40.82 -0.30 6.28 16 36 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 37 H 0.08 1.48 8.14 -51.93 -0.42 1.05 16 38 H 0.40 9.48 7.90 -40.82 -0.32 9.16 16 39 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 40 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.08 0.52 7.31 -51.93 -0.38 0.14 16 42 H 0.05 0.34 6.34 -51.93 -0.33 0.01 16 43 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 349.67 15.07 5.27 5.27 Total: -1.00 -32.36 349.67 -7.53 -39.90 By element: Atomic # 1 Polarization: 21.30 SS G_CDS: -6.41 Total: 14.89 kcal Atomic # 6 Polarization: 14.66 SS G_CDS: -1.12 Total: 13.54 kcal Atomic # 7 Polarization: -58.46 SS G_CDS: -0.05 Total: -58.51 kcal Atomic # 8 Polarization: -30.38 SS G_CDS: -0.20 Total: -30.58 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -32.36 -7.53 -39.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345737091.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.322 kcal (2) G-P(sol) polarization free energy of solvation -32.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds