Wall clock time and date at job start Tue Mar 31 2020 05:49:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.47485 * 2 1 4 4 C 1.53088 * 109.47937 * 120.02399 * 2 1 3 5 5 C 1.53179 * 109.16211 * 62.37804 * 4 2 1 6 6 H 1.08999 * 109.54445 * 297.02248 * 5 4 2 7 7 C 1.52999 * 109.54380 * 176.84107 * 5 4 2 8 8 N 1.46500 * 109.47528 * 175.00015 * 7 5 4 9 9 C 1.34773 * 120.00431 * 180.02562 * 8 7 5 10 10 O 1.21593 * 119.99894 * 359.97438 * 9 8 7 11 11 N 1.34777 * 120.00097 * 179.72742 * 9 8 7 12 12 C 1.46504 * 119.99854 * 180.27545 * 11 9 8 13 13 C 1.50701 * 109.46923 * 179.97438 * 12 11 9 14 14 O 1.21297 * 119.99993 * 0.02562 * 13 12 11 15 15 N 1.34776 * 119.99977 * 179.97438 * 13 12 11 16 16 C 1.37096 * 119.99931 * 180.02562 * 15 13 12 17 17 H 1.07998 * 120.00191 * 359.97438 * 16 15 13 18 18 C 1.38947 * 119.99788 * 180.02562 * 16 15 13 19 19 N 1.31415 * 120.00457 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99903 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.46973 * 89.99963 * 20 18 16 22 22 H 1.48505 * 109.47151 * 209.99607 * 20 18 16 23 23 H 1.48500 * 109.47089 * 330.00141 * 20 18 16 24 24 C 1.53178 * 109.03635 * 56.98031 * 5 4 2 25 25 C 1.53089 * 109.16271 * 303.01762 * 24 5 4 26 26 O 1.42904 * 109.48092 * 239.97236 * 2 1 3 27 27 H 1.08995 * 109.47249 * 299.97072 * 1 2 3 28 28 H 1.08999 * 109.47285 * 59.97647 * 1 2 3 29 29 H 1.09004 * 109.46685 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.52827 * 302.47073 * 4 2 1 31 31 H 1.09003 * 109.51973 * 182.28380 * 4 2 1 32 32 H 1.09009 * 109.47054 * 55.00310 * 7 5 4 33 33 H 1.08998 * 109.47782 * 295.00771 * 7 5 4 34 34 H 0.97000 * 119.99456 * 0.02562 * 8 7 5 35 35 H 0.97000 * 119.99736 * 0.26819 * 11 9 8 36 36 H 1.08998 * 109.46968 * 299.99782 * 12 11 9 37 37 H 1.08997 * 109.47198 * 59.99605 * 12 11 9 38 38 H 0.97003 * 119.99587 * 0.02562 * 15 13 12 39 39 H 0.96990 * 120.00229 * 180.02562 * 19 18 16 40 40 H 1.09001 * 109.52361 * 62.92421 * 24 5 4 41 41 H 1.09002 * 109.52530 * 183.11273 * 24 5 4 42 42 H 1.09005 * 109.48297 * 297.62938 * 25 24 5 43 43 H 1.08996 * 109.48478 * 177.59192 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0405 -0.7222 1.2496 5 6 1.5758 -2.1812 1.2122 6 1 0.4868 -2.2180 1.2424 7 6 2.1469 -2.9313 2.4172 8 7 1.6065 -4.2927 2.4460 9 6 1.9718 -5.1423 3.4265 10 8 2.7504 -4.7789 4.2869 11 7 1.4704 -6.3929 3.4560 12 6 1.8629 -7.3144 4.5252 13 6 1.1669 -8.6366 4.3295 14 8 0.4171 -8.7939 3.3891 15 7 1.3783 -9.6446 5.1987 16 6 0.7455 -10.8477 5.0204 17 1 0.0773 -10.9875 4.1835 18 6 0.9631 -11.8867 5.9168 19 7 1.7758 -11.7165 6.9354 20 14 0.1003 -13.5257 5.6742 21 1 0.9439 -14.4089 4.8295 22 1 -0.1218 -14.1684 6.9944 23 1 -1.2069 -13.3028 5.0059 24 6 2.0766 -2.8322 -0.0808 25 6 1.5647 -2.0285 -1.2790 26 8 2.0066 -0.6742 -1.1664 27 1 -0.3633 0.5133 0.8902 28 1 -0.3634 0.5142 -0.8898 29 1 -0.3633 -1.0277 -0.0005 30 1 1.6421 -0.2357 2.1399 31 1 3.1298 -0.6872 1.2710 32 1 1.8695 -2.4109 3.3340 33 1 3.2332 -2.9732 2.3378 34 1 0.9857 -4.5827 1.7594 35 1 0.8496 -6.6829 2.7694 36 1 2.9423 -7.4640 4.4979 37 1 1.5788 -6.8938 5.4898 38 1 1.9782 -9.5189 5.9506 39 1 1.9279 -12.4419 7.5610 40 1 3.1666 -2.8399 -0.0862 41 1 1.7039 -3.8547 -0.1420 42 1 0.4751 -2.0550 -1.2957 43 1 1.9532 -2.4622 -2.2004 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345737091.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:16 Heat of formation + Delta-G solvation = -154.127403 kcal Electronic energy + Delta-G solvation = -23898.606101 eV Core-core repulsion = 20170.147323 eV Total energy + Delta-G solvation = -3728.458778 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.168 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.35640 -40.69523 -39.96167 -36.88000 -36.20620 -35.26239 -34.07562 -33.36149 -32.96059 -29.94180 -29.01827 -27.13365 -26.04748 -24.45274 -22.97749 -21.97092 -21.35989 -20.30076 -20.07787 -19.51818 -17.65102 -17.46135 -17.14843 -16.97295 -16.82305 -16.46692 -16.17668 -15.91839 -15.58763 -15.45720 -15.14798 -15.13552 -14.46062 -14.21871 -13.95344 -13.71232 -13.53992 -13.49082 -13.08616 -12.97284 -12.89459 -12.66015 -12.45343 -12.12848 -12.12461 -11.91194 -11.60009 -11.56604 -11.41872 -10.96075 -10.55415 -10.43540 -10.39028 -10.09983 -9.80964 -8.50618 -6.00897 1.36825 1.42821 1.54434 1.62527 1.90134 2.11911 2.28996 2.97681 3.05507 3.16605 3.33181 3.63489 3.74331 3.79306 4.04419 4.20192 4.21496 4.38750 4.42996 4.44223 4.46370 4.46905 4.53713 4.68703 4.74364 4.78959 4.88285 5.00990 5.04111 5.16134 5.20533 5.27636 5.31325 5.39010 5.42568 5.52172 5.91523 5.95910 6.34768 6.48377 7.03045 7.03778 7.43132 7.53540 7.94702 8.66300 Molecular weight = 299.17amu Principal moments of inertia in cm(-1) A = 0.038588 B = 0.002186 C = 0.002119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.446488 B =12807.198085 C =13212.210798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.083 3.917 3 H 0.110 0.890 4 C -0.139 4.139 5 C -0.092 4.092 6 H 0.093 0.907 7 C 0.147 3.853 8 N -0.730 5.730 9 C 0.703 3.297 10 O -0.634 6.634 11 N -0.724 5.724 12 C 0.142 3.858 13 C 0.434 3.566 14 O -0.624 6.624 15 N -0.560 5.560 16 C -0.336 4.336 17 H 0.087 0.913 18 C -0.012 4.012 19 N -0.916 5.916 20 Si 0.998 3.002 21 H -0.270 1.270 22 H -0.272 1.272 23 H -0.269 1.269 24 C -0.150 4.150 25 C 0.055 3.945 26 O -0.399 6.399 27 H 0.078 0.922 28 H 0.061 0.939 29 H 0.063 0.937 30 H 0.089 0.911 31 H 0.069 0.931 32 H 0.062 0.938 33 H 0.054 0.946 34 H 0.409 0.591 35 H 0.410 0.590 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.399 0.601 39 H 0.280 0.720 40 H 0.063 0.937 41 H 0.080 0.920 42 H 0.064 0.936 43 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.365 21.621 -12.546 25.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.026 3.974 3 H 0.128 0.872 4 C -0.178 4.178 5 C -0.111 4.111 6 H 0.111 0.889 7 C 0.023 3.977 8 N -0.387 5.387 9 C 0.403 3.597 10 O -0.516 6.516 11 N -0.382 5.382 12 C 0.013 3.987 13 C 0.221 3.779 14 O -0.512 6.512 15 N -0.195 5.195 16 C -0.466 4.466 17 H 0.105 0.895 18 C -0.213 4.213 19 N -0.556 5.556 20 Si 0.821 3.179 21 H -0.196 1.196 22 H -0.197 1.197 23 H -0.194 1.194 24 C -0.188 4.188 25 C -0.021 4.021 26 O -0.318 6.318 27 H 0.097 0.903 28 H 0.080 0.920 29 H 0.082 0.918 30 H 0.108 0.892 31 H 0.087 0.913 32 H 0.080 0.920 33 H 0.073 0.927 34 H 0.246 0.754 35 H 0.248 0.752 36 H 0.109 0.891 37 H 0.109 0.891 38 H 0.233 0.767 39 H 0.089 0.911 40 H 0.082 0.918 41 H 0.099 0.901 42 H 0.082 0.918 43 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -0.975 21.799 -12.349 25.073 hybrid contribution -0.520 -1.314 0.193 1.426 sum -1.495 20.485 -12.156 23.867 Atomic orbital electron populations 1.22451 0.95501 1.03020 1.03273 1.22286 0.94188 0.96594 0.84314 0.87231 1.22153 1.01947 0.94288 0.99371 1.21415 1.01517 0.95046 0.93099 0.88874 1.21267 0.97923 0.79851 0.98609 1.44947 1.51154 1.13283 1.29279 1.15975 0.80689 0.80598 0.82474 1.90886 1.41027 1.77834 1.41831 1.44680 1.50871 1.11305 1.31310 1.20576 0.99648 0.86821 0.91665 1.20409 0.86167 0.86616 0.84685 1.90465 1.42846 1.83637 1.34223 1.41844 1.41322 1.11027 1.25343 1.19734 1.25380 0.89469 1.11979 0.89521 1.26144 0.97380 1.03078 0.94649 1.69680 1.36216 1.35302 1.14443 0.84860 0.78418 0.76723 0.77930 1.19567 1.19702 1.19399 1.22250 1.01727 1.00144 0.94662 1.22666 0.99443 0.81602 0.98386 1.87973 1.74266 1.25541 1.44068 0.90320 0.91982 0.91773 0.89235 0.91257 0.92009 0.92725 0.75442 0.75197 0.89147 0.89096 0.76698 0.91079 0.91818 0.90100 0.91779 0.88386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.75 8.65 71.98 0.62 -1.13 16 2 C 0.08 0.98 3.91 30.63 0.12 1.10 16 3 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 4 C -0.14 -1.62 4.93 30.68 0.15 -1.47 16 5 C -0.09 -1.17 2.00 -10.67 -0.02 -1.19 16 6 H 0.09 1.02 6.62 -2.39 -0.02 1.00 16 7 C 0.15 2.77 5.07 86.38 0.44 3.21 16 8 N -0.73 -15.93 5.32 -478.53 -2.55 -18.48 16 9 C 0.70 22.07 8.57 179.06 1.53 23.61 16 10 O -0.63 -24.62 16.34 -4.01 -0.07 -24.69 16 11 N -0.72 -23.61 5.53 -482.29 -2.67 -26.28 16 12 C 0.14 5.21 6.15 85.63 0.53 5.73 16 13 C 0.43 19.93 7.85 87.66 0.69 20.62 16 14 O -0.62 -31.83 15.24 -3.08 -0.05 -31.88 16 15 N -0.56 -28.06 5.29 -306.98 -1.62 -29.68 16 16 C -0.34 -18.45 9.68 84.04 0.81 -17.64 16 17 H 0.09 4.99 7.16 -2.91 -0.02 4.97 16 18 C -0.01 -0.62 5.50 84.93 0.47 -0.15 16 19 N -0.92 -48.65 13.05 21.66 0.28 -48.37 16 20 Si 1.00 41.57 29.55 68.60 2.03 43.60 16 21 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 22 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 23 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 24 C -0.15 -1.96 5.26 30.68 0.16 -1.80 16 25 C 0.06 0.70 6.52 72.01 0.47 1.17 16 26 O -0.40 -6.47 10.60 -148.98 -1.58 -8.05 16 27 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 28 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.06 0.61 4.98 -2.38 -0.01 0.59 16 30 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.06 1.25 8.14 -2.38 -0.02 1.23 16 33 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.41 6.79 7.72 -92.71 -0.72 6.08 16 35 H 0.41 12.85 7.45 -92.71 -0.69 12.16 16 36 H 0.09 3.21 8.14 -2.39 -0.02 3.19 16 37 H 0.09 3.22 8.14 -2.39 -0.02 3.20 16 38 H 0.40 19.26 7.90 -92.71 -0.73 18.52 16 39 H 0.28 13.89 8.31 -92.72 -0.77 13.12 16 40 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.08 0.96 7.31 -2.39 -0.02 0.94 16 42 H 0.06 0.68 6.34 -2.38 -0.02 0.66 16 43 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 Total: -1.00 -68.36 349.67 -1.33 -69.70 By element: Atomic # 1 Polarization: 43.15 SS G_CDS: -1.08 Total: 42.06 kcal Atomic # 6 Polarization: 26.09 SS G_CDS: 5.97 Total: 32.07 kcal Atomic # 7 Polarization: -116.26 SS G_CDS: -6.56 Total: -122.81 kcal Atomic # 8 Polarization: -62.92 SS G_CDS: -1.69 Total: -64.61 kcal Atomic # 14 Polarization: 41.57 SS G_CDS: 2.03 Total: 43.60 kcal Total: -68.36 -1.33 -69.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345737091.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.431 kcal (2) G-P(sol) polarization free energy of solvation -68.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds